Wall clock time and date at job start Tue Mar 31 2020 22:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31351 * 1 3 3 Si 1.86794 * 120.00088 * 2 1 4 4 H 1.48508 * 109.46995 * 239.99696 * 3 2 1 5 5 H 1.48503 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47448 * 119.99915 * 3 2 1 7 7 C 1.39011 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00094 * 199.64948 * 7 2 1 9 9 N 1.36894 * 119.99808 * 19.65415 * 7 2 1 10 10 C 1.38213 * 125.61696 * 214.78308 * 9 7 2 11 11 C 1.46897 * 125.43780 * 359.97438 * 10 9 7 12 12 O 1.21670 * 119.99594 * 9.46630 * 11 10 9 13 13 N 1.34774 * 119.99919 * 189.47371 * 11 10 9 14 14 C 1.45586 * 117.22241 * 6.74049 * 13 11 10 15 15 C 1.53252 * 108.84051 * 153.74231 * 14 13 11 16 16 C 1.52718 * 107.82101 * 57.66208 * 15 14 13 17 17 C 1.51363 * 111.42624 * 294.52681 * 16 15 14 18 18 H 1.09002 * 109.20539 * 275.12507 * 17 16 15 19 19 C 1.54321 * 109.71015 * 155.54938 * 17 16 15 20 20 O 1.43648 * 106.06067 * 255.41289 * 19 17 16 21 21 C 1.43638 * 107.64636 * 328.14257 * 20 19 17 22 22 C 1.43762 * 117.21708 * 186.48770 * 13 11 10 23 23 H 1.08999 * 108.07170 * 301.06388 * 22 13 11 24 24 C 1.36116 * 109.12728 * 179.97438 * 10 9 7 25 25 C 1.41701 * 107.74797 * 359.97438 * 24 10 9 26 26 C 1.40022 * 133.34769 * 180.02562 * 25 24 10 27 27 C 1.36579 * 119.83070 * 179.97438 * 26 25 24 28 28 C 1.38851 * 120.59537 * 0.02562 * 27 26 25 29 29 C 1.37838 * 120.63998 * 0.26642 * 28 27 26 30 30 C 1.37831 * 125.62232 * 34.74940 * 9 7 2 31 31 H 0.97003 * 119.99803 * 2.88209 * 1 2 3 32 32 H 1.08999 * 109.57716 * 273.55060 * 14 13 11 33 33 H 1.09000 * 109.57415 * 33.80512 * 14 13 11 34 34 H 1.08997 * 109.78608 * 177.24386 * 15 14 13 35 35 H 1.09005 * 109.78741 * 298.02369 * 15 14 13 36 36 H 1.09003 * 109.08829 * 55.02729 * 16 15 14 37 37 H 1.08999 * 109.08724 * 174.09087 * 16 15 14 38 38 H 1.08999 * 110.13098 * 14.56324 * 19 17 16 39 39 H 1.08998 * 110.13098 * 136.26495 * 19 17 16 40 40 H 1.09005 * 110.11459 * 150.27232 * 21 20 19 41 41 H 1.09007 * 110.10703 * 271.84157 * 21 20 19 42 42 H 1.08002 * 126.13097 * 179.97438 * 24 10 9 43 43 H 1.08008 * 120.08489 * 359.97438 * 26 25 24 44 44 H 1.08003 * 119.69976 * 180.02562 * 27 26 25 45 45 H 1.08007 * 119.68040 * 180.02562 * 28 27 26 46 46 H 1.08001 * 120.09614 * 179.72667 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1013 1.6963 -1.2125 5 1 1.2826 2.7465 -0.0006 6 1 3.1012 1.6964 1.2124 7 6 2.0086 -1.2039 0.0005 8 1 3.0414 -1.2310 0.3151 9 7 1.3838 -2.3550 -0.3977 10 6 1.6057 -3.6142 0.1272 11 6 2.5523 -3.9333 1.2042 12 8 3.0916 -3.0369 1.8255 13 7 2.8234 -5.2190 1.5040 14 6 2.2644 -6.2392 0.6287 15 6 3.1519 -7.4869 0.6927 16 6 3.2185 -7.9388 2.1500 17 6 3.9243 -6.9162 3.0144 18 1 5.0002 -7.0830 2.9611 19 6 3.4613 -7.0642 4.4790 20 8 2.5640 -5.9697 4.7247 21 6 3.0019 -4.8597 3.9251 22 6 3.6447 -5.4660 2.6578 23 1 4.6001 -4.9635 2.5067 24 6 0.8071 -4.5114 -0.5131 25 6 0.0493 -3.8032 -1.4786 26 6 -0.9180 -4.1903 -2.4140 27 6 -1.4864 -3.2545 -3.2305 28 6 -1.1136 -1.9199 -3.1426 29 6 -0.1593 -1.5155 -2.2338 30 6 0.4295 -2.4493 -1.3877 31 1 -0.4850 0.8390 -0.0422 32 1 1.2563 -6.4908 0.9582 33 1 2.2312 -5.8644 -0.3943 34 1 2.7205 -8.2785 0.0802 35 1 4.1528 -7.2466 0.3339 36 1 2.2053 -8.0839 2.5248 37 1 3.7578 -8.8844 2.2057 38 1 2.9419 -8.0129 4.6142 39 1 4.3176 -7.0055 5.1509 40 1 2.1510 -4.2353 3.6525 41 1 3.7382 -4.2710 4.4724 42 1 0.7594 -5.5729 -0.3200 43 1 -1.2139 -5.2263 -2.4897 44 1 -2.2326 -3.5554 -3.9510 45 1 -1.5729 -1.1922 -3.7952 46 1 0.1272 -0.4758 -2.1760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590921735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:54 Heat of formation + Delta-G solvation = 11.950784 kcal Electronic energy + Delta-G solvation = -30726.480742 eV Core-core repulsion = 26775.512533 eV Total energy + Delta-G solvation = -3950.968209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.13481 -40.12041 -38.18038 -36.44033 -35.78587 -33.91566 -33.15680 -31.70486 -30.56411 -28.99068 -28.93430 -27.49609 -25.81580 -24.86071 -23.52189 -22.59805 -22.28487 -20.96880 -20.13969 -19.55699 -18.59559 -17.66233 -16.87749 -16.41111 -15.99966 -15.60698 -15.36210 -15.08347 -15.02220 -14.77088 -14.44672 -14.14811 -13.66564 -13.51714 -13.13590 -13.00249 -12.88758 -12.79849 -12.60623 -12.37221 -12.19481 -11.91379 -11.72204 -11.58395 -11.25932 -11.21485 -11.09249 -10.86531 -10.73841 -10.65556 -10.64284 -10.33174 -10.26544 -9.70431 -9.59861 -9.10052 -9.03525 -8.62238 -8.26545 -7.17738 -6.83168 -6.53607 -4.36455 1.83000 2.78982 3.05375 3.06464 3.08086 3.13265 3.20305 3.86426 3.92300 4.18899 4.26840 4.56587 4.62334 4.73363 4.76925 4.88099 5.01647 5.12749 5.17639 5.25367 5.29349 5.46733 5.49115 5.61654 5.66234 5.74579 5.78272 5.85368 5.87306 5.97215 5.98802 6.02551 6.09752 6.14020 6.22008 6.34420 6.58170 6.71261 6.84536 6.92772 7.01143 7.07468 7.12376 7.19420 7.47947 7.59824 7.66567 7.72490 7.99502 8.11604 8.42562 8.72227 8.93701 9.32853 10.21424 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.004451 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.503409 B = 6288.655857 C = 8064.354073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.050 3.950 3 Si 0.929 3.071 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.331 4.331 8 H 0.117 0.883 9 N -0.225 5.225 10 C -0.028 4.028 11 C 0.580 3.420 12 O -0.529 6.529 13 N -0.595 5.595 14 C 0.096 3.904 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.119 4.119 18 H 0.087 0.913 19 C 0.053 3.947 20 O -0.377 6.377 21 C 0.042 3.958 22 C 0.137 3.863 23 H 0.077 0.923 24 C -0.230 4.230 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.155 4.155 28 C -0.157 4.157 29 C -0.045 4.045 30 C 0.080 3.920 31 H 0.282 0.718 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.149 0.851 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.944 -12.925 1.055 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.163 4.163 3 Si 0.753 3.247 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.459 4.459 8 H 0.135 0.865 9 N 0.115 4.885 10 C -0.146 4.146 11 C 0.372 3.628 12 O -0.406 6.406 13 N -0.330 5.330 14 C -0.026 4.026 15 C -0.172 4.172 16 C -0.148 4.148 17 C -0.138 4.138 18 H 0.105 0.895 19 C -0.024 4.024 20 O -0.295 6.295 21 C -0.035 4.035 22 C 0.032 3.968 23 H 0.094 0.906 24 C -0.257 4.257 25 C -0.129 4.129 26 C -0.112 4.112 27 C -0.174 4.174 28 C -0.178 4.178 29 C -0.065 4.065 30 C -0.035 4.035 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.166 0.834 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.088 -12.001 1.760 13.153 hybrid contribution 0.377 0.872 0.060 0.952 sum 5.466 -11.129 1.821 12.532 Atomic orbital electron populations 1.70048 1.06474 1.29602 1.38412 1.25628 0.95360 1.00753 0.94526 0.85949 0.79509 0.79328 0.79952 1.18964 1.20172 1.18866 1.19994 0.97464 0.82976 1.45506 0.86521 1.39958 1.24649 1.04419 1.19458 1.19470 1.05624 0.87533 1.01938 1.17406 0.80838 0.81761 0.82805 1.90775 1.51190 1.45847 1.52769 1.46554 1.52611 1.06335 1.27481 1.22504 0.96076 0.87900 0.96115 1.21870 1.01011 0.97916 0.96435 1.21165 1.01215 0.97332 0.95107 1.21855 1.01657 0.93924 0.96365 0.89461 1.23419 0.93657 0.91608 0.93692 1.88686 1.52243 1.22355 1.66265 1.23894 1.00769 0.89100 0.89763 1.20836 0.94798 0.94910 0.86279 0.90553 1.21231 1.02968 0.98620 1.02861 1.17999 1.01164 0.93039 1.00682 1.20004 0.97150 0.97900 0.96182 1.20264 1.02207 0.93572 1.01350 1.20537 1.00396 0.95581 1.01249 1.20191 0.95265 0.97991 0.93043 1.18102 0.97627 0.94049 0.93752 0.90731 0.91420 0.87095 0.90045 0.91230 0.91182 0.91380 0.89308 0.92439 0.88500 0.91504 0.83419 0.87940 0.88078 0.87820 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.68 10.59 55.50 0.59 -21.09 16 2 C 0.05 1.28 4.39 -17.47 -0.08 1.21 16 3 Si 0.93 19.71 29.60 -169.99 -5.03 14.68 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.33 -8.97 8.85 -15.01 -0.13 -9.10 16 8 H 0.12 3.21 6.94 -52.49 -0.36 2.85 16 9 N -0.23 -5.97 2.86 -56.08 -0.16 -6.13 16 10 C -0.03 -0.67 6.53 -82.25 -0.54 -1.20 16 11 C 0.58 12.64 6.69 -12.76 -0.09 12.55 16 12 O -0.53 -12.96 13.58 5.22 0.07 -12.89 16 13 N -0.60 -10.00 2.97 -169.83 -0.51 -10.51 16 14 C 0.10 1.32 4.26 -4.40 -0.02 1.30 16 15 C -0.13 -1.35 6.09 -26.75 -0.16 -1.52 16 16 C -0.11 -1.04 5.12 -27.70 -0.14 -1.18 16 17 C -0.12 -1.28 3.11 -91.30 -0.28 -1.57 16 18 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.05 0.58 7.20 37.85 0.27 0.85 16 20 O -0.38 -5.77 11.50 -35.23 -0.41 -6.18 16 21 C 0.04 0.69 6.59 37.94 0.25 0.94 16 22 C 0.14 2.02 2.82 -69.14 -0.19 1.83 16 23 H 0.08 1.17 8.02 -51.93 -0.42 0.75 16 24 C -0.23 -4.83 8.49 -39.02 -0.33 -5.17 16 25 C -0.12 -2.84 6.16 -106.89 -0.66 -3.50 16 26 C -0.09 -1.86 10.06 -39.51 -0.40 -2.26 16 27 C -0.15 -2.97 9.97 -39.95 -0.40 -3.37 16 28 C -0.16 -3.25 10.02 -39.50 -0.40 -3.64 16 29 C -0.05 -1.09 8.47 -39.41 -0.33 -1.42 16 30 C 0.08 2.03 6.10 -83.84 -0.51 1.51 16 31 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.07 0.92 7.12 -51.93 -0.37 0.55 16 33 H 0.11 1.64 5.10 -51.93 -0.26 1.37 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.70 7.74 -51.93 -0.40 0.30 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.81 7.60 -51.93 -0.39 0.42 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.10 1.90 6.74 -51.93 -0.35 1.55 16 41 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.15 2.51 4.19 -52.49 -0.22 2.29 16 43 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 44 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 45 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 46 H 0.11 2.81 6.17 -52.49 -0.32 2.49 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -31.10 354.30 -10.29 -41.39 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.05 Total: 9.11 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -4.14 Total: -13.73 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.08 Total: -37.73 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.33 Total: -19.06 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.10 -10.29 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590921735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.339 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds