Wall clock time and date at job start Tue Mar 31 2020 23:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47012 * 125.60676 * 3 2 1 5 5 S 1.81404 * 109.47286 * 300.00059 * 4 3 2 6 6 O 1.42100 * 110.54113 * 291.62518 * 5 4 3 7 7 O 1.42100 * 110.54215 * 68.37278 * 5 4 3 8 8 N 1.65596 * 104.44761 * 179.97438 * 5 4 3 9 9 C 1.46929 * 120.63251 * 269.71818 * 8 5 4 10 10 C 1.53623 * 108.54108 * 126.37484 * 9 8 5 11 11 C 1.53030 * 109.24496 * 54.85454 * 10 9 8 12 12 C 1.53038 * 109.54167 * 298.51411 * 11 10 9 13 13 H 1.09004 * 109.52321 * 301.39554 * 12 11 10 14 14 C 1.50701 * 109.50244 * 181.31652 * 12 11 10 15 15 H 1.07991 * 120.00455 * 240.16460 * 14 12 11 16 16 C 1.37882 * 119.99934 * 60.15690 * 14 12 11 17 17 N 1.31515 * 119.99934 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00045 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47275 * 90.00272 * 18 16 14 20 20 H 1.48505 * 109.47339 * 209.99939 * 18 16 14 21 21 H 1.48503 * 109.47264 * 330.00069 * 18 16 14 22 22 C 1.46927 * 120.62994 * 90.00593 * 8 5 4 23 23 C 1.52997 * 109.47172 * 245.60665 * 3 2 1 24 24 C 1.53002 * 109.46817 * 60.00286 * 23 3 2 25 25 C 1.53000 * 109.47233 * 60.00194 * 24 23 3 26 26 C 1.52997 * 109.47060 * 299.99657 * 25 24 23 27 27 C 1.52999 * 109.47317 * 59.99960 * 26 25 24 28 28 H 1.09004 * 109.46930 * 60.00072 * 4 3 2 29 29 H 1.09002 * 109.47067 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.58386 * 246.20677 * 9 8 5 31 31 H 1.08997 * 109.58226 * 6.62799 * 9 8 5 32 32 H 1.09004 * 109.62898 * 294.86056 * 10 9 8 33 33 H 1.09001 * 109.45625 * 174.74255 * 10 9 8 34 34 H 1.09002 * 109.46489 * 178.49078 * 11 10 9 35 35 H 1.09003 * 109.44802 * 58.52968 * 11 10 9 36 36 H 0.97006 * 120.00156 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.58823 * 353.36556 * 22 8 5 38 38 H 1.08992 * 109.58902 * 113.65033 * 22 8 5 39 39 H 1.08993 * 109.47194 * 299.99768 * 23 3 2 40 40 H 1.09002 * 109.46695 * 179.97438 * 23 3 2 41 41 H 1.08992 * 109.47063 * 299.99823 * 24 23 3 42 42 H 1.09004 * 109.46733 * 179.97438 * 24 23 3 43 43 H 1.09002 * 109.47398 * 59.99826 * 25 24 23 44 44 H 1.09001 * 109.47194 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47853 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47153 * 300.00319 * 26 25 24 47 47 H 1.09000 * 109.47486 * 180.02562 * 27 26 25 48 48 H 1.09002 * 109.46716 * 60.00091 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8408 -1.1728 5 16 2.5132 0.1342 -2.7305 6 8 3.1264 -1.1235 -2.9786 7 8 1.1058 0.2971 -2.8390 8 7 3.1304 1.1284 -3.9021 9 6 2.3738 2.3000 -4.3646 10 6 3.2712 3.5408 -4.2412 11 6 4.5770 3.2964 -5.0008 12 6 5.3139 2.1062 -4.3825 13 1 5.5154 2.3090 -3.3306 14 6 6.6149 1.8865 -5.1106 15 1 6.8025 0.9475 -5.6099 16 6 7.5658 2.8845 -5.1393 17 7 7.3377 4.0279 -4.5310 18 14 9.1782 2.6125 -6.0424 19 1 9.0349 3.0504 -7.4541 20 1 10.2522 3.4008 -5.3863 21 1 9.5295 1.1701 -6.0048 22 6 4.4422 0.8522 -4.5035 23 6 3.1177 0.5966 1.3137 24 6 2.6081 -0.2436 2.4865 25 6 3.1188 -1.6789 2.3455 26 6 2.6091 -2.2749 1.0318 27 6 3.1186 -1.4348 -0.1410 28 1 2.7538 1.8634 -1.0724 29 1 4.2076 0.8416 -1.1726 30 1 2.0818 2.1588 -5.4052 31 1 1.4846 2.4275 -3.7474 32 1 3.4914 3.7305 -3.1906 33 1 2.7586 4.4034 -4.6670 34 1 5.2054 4.1849 -4.9381 35 1 4.3542 3.0824 -6.0461 36 1 8.0068 4.7300 -4.5509 37 1 4.9181 0.0243 -3.9779 38 1 4.3151 0.5930 -5.5545 39 1 2.7540 1.6192 1.4141 40 1 4.2077 0.5967 1.3138 41 1 1.5182 -0.2440 2.4865 42 1 2.9717 0.1808 3.4224 43 1 4.2089 -1.6784 2.3455 44 1 2.7554 -2.2776 3.1808 45 1 2.9725 -3.2976 0.9315 46 1 1.5191 -2.2754 1.0318 47 1 2.7551 -1.8591 -1.0769 48 1 4.2086 -1.4343 -0.1410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594801499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:59 Heat of formation + Delta-G solvation = -67.560369 kcal Electronic energy + Delta-G solvation = -29389.542845 eV Core-core repulsion = 25570.570726 eV Total energy + Delta-G solvation = -3818.972120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.98873 -37.78737 -37.02739 -35.91959 -35.76907 -33.39774 -33.32253 -31.26800 -31.08895 -30.16171 -27.28935 -25.17877 -23.74953 -23.21549 -23.06557 -21.74191 -21.02625 -19.54362 -18.41129 -17.58610 -17.00641 -16.41115 -16.11945 -15.81297 -15.41573 -14.95144 -14.72925 -14.67578 -14.09844 -13.83377 -13.65854 -13.49797 -13.35384 -13.25524 -12.87881 -12.86413 -12.72885 -12.47740 -12.29525 -12.23168 -12.14304 -11.90137 -11.79850 -11.78608 -11.45286 -11.37083 -11.06501 -11.03156 -10.91898 -10.84146 -10.76621 -10.51901 -10.31260 -10.22395 -10.00547 -9.83253 -9.44082 -8.92806 -8.50914 -8.22242 -6.09087 -4.16452 0.37898 2.55567 2.58626 2.86258 3.25264 3.32829 3.36125 3.49465 3.86117 4.15348 4.22949 4.33480 4.37596 4.42348 4.71761 4.83730 4.86506 5.03451 5.09674 5.14014 5.18850 5.22206 5.30579 5.45840 5.52274 5.62031 5.67635 5.72775 5.74581 5.79109 5.82630 5.93101 5.93259 5.96193 6.09345 6.20630 6.26352 6.41300 6.53537 6.58754 6.79836 6.94197 7.12382 7.35839 7.38498 7.63039 7.83217 8.00979 8.31608 8.87251 9.49285 10.96126 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.003663 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.787559 B = 7642.051131 C = 8405.324891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.183 3.817 3 C 0.062 3.938 4 C -0.635 4.635 5 S 2.599 3.401 6 O -0.949 6.949 7 O -0.956 6.956 8 N -0.991 5.991 9 C 0.123 3.877 10 C -0.136 4.136 11 C -0.111 4.111 12 C 0.038 3.962 13 H 0.030 0.970 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.124 3.876 23 C -0.100 4.100 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.142 4.142 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.036 0.964 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.088 0.912 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -5.787 11.832 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.064 5.064 2 C -0.136 4.136 3 C 0.057 3.943 4 C -0.763 4.763 5 S 2.692 3.308 6 O -0.939 6.939 7 O -0.946 6.946 8 N -0.830 5.830 9 C -0.002 4.002 10 C -0.175 4.175 11 C -0.149 4.149 12 C 0.019 3.981 13 H 0.048 0.952 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C 0.001 3.999 23 C -0.139 4.139 24 C -0.164 4.164 25 C -0.159 4.159 26 C -0.160 4.160 27 C -0.180 4.180 28 H 0.159 0.841 29 H 0.176 0.824 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.107 0.893 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.603 -6.375 11.710 15.867 hybrid contribution 1.719 0.684 -0.226 1.864 sum -6.883 -5.691 11.484 14.548 Atomic orbital electron populations 1.81172 1.12219 1.06858 1.06152 1.28961 0.94899 0.94538 0.95213 1.17901 0.81683 0.97589 0.97085 1.30983 1.14738 1.12059 1.18500 1.05293 0.74647 0.75014 0.75850 1.93575 1.78144 1.38896 1.83325 1.93603 1.29059 1.86514 1.85438 1.57627 1.31033 1.41969 1.52373 1.21525 0.93278 0.85136 1.00259 1.22108 0.98445 0.95535 1.01372 1.21589 0.93206 1.03251 0.96845 1.19007 0.92297 0.89560 0.97281 0.95212 1.21109 1.00007 1.00595 1.33890 0.92312 1.24925 0.98334 0.95134 0.95290 1.69867 1.34770 1.04867 1.43190 0.86605 0.83300 0.78322 0.79848 1.20702 1.21284 1.19796 1.21866 0.79876 1.00304 0.97901 1.21641 1.02368 0.99393 0.90545 1.21638 1.00987 0.95650 0.98134 1.21584 1.01368 0.95679 0.97276 1.21572 1.00924 0.99511 0.93956 1.22204 1.03666 0.91085 1.01042 0.84109 0.82431 0.91393 0.90693 0.92514 0.92503 0.88710 0.94474 0.92946 0.90454 0.91847 0.90481 0.88895 0.92049 0.90855 0.91035 0.91633 0.90484 0.92023 0.89345 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.31 18.54 42.15 0.78 -5.53 16 2 C 0.18 2.54 9.54 -20.76 -0.20 2.34 16 3 C 0.06 0.69 0.50 -157.29 -0.08 0.61 16 4 C -0.63 -7.46 5.15 37.16 0.19 -7.27 16 5 S 2.60 41.18 4.60 -107.50 -0.49 40.69 16 6 O -0.95 -16.60 14.35 -57.54 -0.83 -17.42 16 7 O -0.96 -17.40 15.41 -57.54 -0.89 -18.29 16 8 N -0.99 -16.79 3.21 -113.27 -0.36 -17.15 16 9 C 0.12 1.97 6.34 -3.48 -0.02 1.95 16 10 C -0.14 -2.29 6.10 -26.39 -0.16 -2.45 16 11 C -0.11 -2.34 4.96 -26.70 -0.13 -2.47 16 12 C 0.04 0.85 2.25 -91.65 -0.21 0.64 16 13 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.52 -12.94 8.56 -34.44 -0.29 -13.24 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -23.38 11.32 55.43 0.63 -22.76 16 18 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 22 C 0.12 2.38 5.54 -3.71 -0.02 2.36 16 23 C -0.10 -0.84 4.71 -26.73 -0.13 -0.97 16 24 C -0.13 -0.99 5.70 -26.73 -0.15 -1.14 16 25 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 26 C -0.12 -1.10 5.70 -26.73 -0.15 -1.26 16 27 C -0.14 -1.50 4.23 -26.73 -0.11 -1.62 16 28 H 0.14 1.44 8.14 -51.92 -0.42 1.02 16 29 H 0.16 1.58 8.14 -51.92 -0.42 1.16 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.09 7.09 -51.93 -0.37 0.72 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 2.27 6.05 -51.93 -0.31 1.96 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 6.61 8.31 -40.82 -0.34 6.28 16 37 H 0.08 1.43 7.10 -51.93 -0.37 1.06 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.56 7.23 -51.93 -0.38 0.18 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.62 7.23 -51.93 -0.38 0.25 16 47 H 0.09 1.11 5.46 -51.93 -0.28 0.82 16 48 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -30.61 377.14 -10.19 -40.79 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.97 Total: 1.01 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -1.72 Total: -21.99 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 1.04 Total: -45.44 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.71 Total: -35.71 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 41.18 SS G_CDS: -0.49 Total: 40.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.61 -10.19 -40.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594801499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.766 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds