Wall clock time and date at job start Tue Mar 31 2020 23:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47012 * 125.60676 * 3 2 1 5 5 S 1.81404 * 109.47286 * 300.00059 * 4 3 2 6 6 O 1.42100 * 110.54113 * 291.62518 * 5 4 3 7 7 O 1.42100 * 110.54215 * 68.37278 * 5 4 3 8 8 N 1.65596 * 104.44761 * 179.97438 * 5 4 3 9 9 C 1.46929 * 120.63251 * 269.71818 * 8 5 4 10 10 C 1.53623 * 108.54108 * 126.37484 * 9 8 5 11 11 C 1.53030 * 109.24496 * 54.85454 * 10 9 8 12 12 C 1.53038 * 109.54167 * 298.51411 * 11 10 9 13 13 H 1.09004 * 109.52321 * 301.39554 * 12 11 10 14 14 C 1.50701 * 109.50244 * 181.31652 * 12 11 10 15 15 H 1.07991 * 120.00455 * 240.16460 * 14 12 11 16 16 C 1.37882 * 119.99934 * 60.15690 * 14 12 11 17 17 N 1.31515 * 119.99934 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00045 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47275 * 90.00272 * 18 16 14 20 20 H 1.48505 * 109.47339 * 209.99939 * 18 16 14 21 21 H 1.48503 * 109.47264 * 330.00069 * 18 16 14 22 22 C 1.46927 * 120.62994 * 90.00593 * 8 5 4 23 23 C 1.52997 * 109.47172 * 245.60665 * 3 2 1 24 24 C 1.53002 * 109.46817 * 60.00286 * 23 3 2 25 25 C 1.53000 * 109.47233 * 60.00194 * 24 23 3 26 26 C 1.52997 * 109.47060 * 299.99657 * 25 24 23 27 27 C 1.52999 * 109.47317 * 59.99960 * 26 25 24 28 28 H 1.09004 * 109.46930 * 60.00072 * 4 3 2 29 29 H 1.09002 * 109.47067 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.58386 * 246.20677 * 9 8 5 31 31 H 1.08997 * 109.58226 * 6.62799 * 9 8 5 32 32 H 1.09004 * 109.62898 * 294.86056 * 10 9 8 33 33 H 1.09001 * 109.45625 * 174.74255 * 10 9 8 34 34 H 1.09002 * 109.46489 * 178.49078 * 11 10 9 35 35 H 1.09003 * 109.44802 * 58.52968 * 11 10 9 36 36 H 0.97006 * 120.00156 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.58823 * 353.36556 * 22 8 5 38 38 H 1.08992 * 109.58902 * 113.65033 * 22 8 5 39 39 H 1.08993 * 109.47194 * 299.99768 * 23 3 2 40 40 H 1.09002 * 109.46695 * 179.97438 * 23 3 2 41 41 H 1.08992 * 109.47063 * 299.99823 * 24 23 3 42 42 H 1.09004 * 109.46733 * 179.97438 * 24 23 3 43 43 H 1.09002 * 109.47398 * 59.99826 * 25 24 23 44 44 H 1.09001 * 109.47194 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.47853 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47153 * 300.00319 * 26 25 24 47 47 H 1.09000 * 109.47486 * 180.02562 * 27 26 25 48 48 H 1.09002 * 109.46716 * 60.00091 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8408 -1.1728 5 16 2.5132 0.1342 -2.7305 6 8 3.1264 -1.1235 -2.9786 7 8 1.1058 0.2971 -2.8390 8 7 3.1304 1.1284 -3.9021 9 6 2.3738 2.3000 -4.3646 10 6 3.2712 3.5408 -4.2412 11 6 4.5770 3.2964 -5.0008 12 6 5.3139 2.1062 -4.3825 13 1 5.5154 2.3090 -3.3306 14 6 6.6149 1.8865 -5.1106 15 1 6.8025 0.9475 -5.6099 16 6 7.5658 2.8845 -5.1393 17 7 7.3377 4.0279 -4.5310 18 14 9.1782 2.6125 -6.0424 19 1 9.0349 3.0504 -7.4541 20 1 10.2522 3.4008 -5.3863 21 1 9.5295 1.1701 -6.0048 22 6 4.4422 0.8522 -4.5035 23 6 3.1177 0.5966 1.3137 24 6 2.6081 -0.2436 2.4865 25 6 3.1188 -1.6789 2.3455 26 6 2.6091 -2.2749 1.0318 27 6 3.1186 -1.4348 -0.1410 28 1 2.7538 1.8634 -1.0724 29 1 4.2076 0.8416 -1.1726 30 1 2.0818 2.1588 -5.4052 31 1 1.4846 2.4275 -3.7474 32 1 3.4914 3.7305 -3.1906 33 1 2.7586 4.4034 -4.6670 34 1 5.2054 4.1849 -4.9381 35 1 4.3542 3.0824 -6.0461 36 1 8.0068 4.7300 -4.5509 37 1 4.9181 0.0243 -3.9779 38 1 4.3151 0.5930 -5.5545 39 1 2.7540 1.6192 1.4141 40 1 4.2077 0.5967 1.3138 41 1 1.5182 -0.2440 2.4865 42 1 2.9717 0.1808 3.4224 43 1 4.2089 -1.6784 2.3455 44 1 2.7554 -2.2776 3.1808 45 1 2.9725 -3.2976 0.9315 46 1 1.5191 -2.2754 1.0318 47 1 2.7551 -1.8591 -1.0769 48 1 4.2086 -1.4343 -0.1410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594801499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:58 Heat of formation + Delta-G solvation = -85.452935 kcal Electronic energy + Delta-G solvation = -29390.318725 eV Core-core repulsion = 25570.570726 eV Total energy + Delta-G solvation = -3819.747999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.80814 -39.27797 -38.34069 -37.10358 -36.94774 -35.15066 -34.15843 -32.68412 -31.86055 -31.81403 -28.14543 -26.97717 -25.16992 -24.13450 -23.77879 -23.28697 -21.76204 -21.02256 -19.75664 -18.90050 -18.10391 -18.01458 -17.31381 -17.03604 -16.51792 -16.33038 -15.78321 -15.53263 -15.40469 -15.10648 -14.84451 -14.79238 -14.45658 -14.35499 -14.29631 -14.17953 -13.86832 -13.67525 -13.36608 -13.27588 -13.21045 -13.05872 -12.94899 -12.82730 -12.70321 -12.65494 -12.64334 -12.48268 -12.16100 -12.04699 -11.83366 -11.74807 -11.54522 -11.46603 -11.22628 -11.07684 -10.86645 -10.71055 -10.35134 -9.72121 -8.01968 -6.14469 -0.83832 1.45196 1.46797 1.50411 1.52596 1.57845 1.63372 2.50006 2.53740 2.72421 3.07001 3.22136 3.26044 3.46522 3.66679 3.80604 4.01480 4.10935 4.19890 4.22856 4.26054 4.37881 4.39946 4.51009 4.57558 4.61622 4.63642 4.66730 4.84615 4.86841 4.91112 4.99900 5.02077 5.06967 5.12649 5.17932 5.19388 5.31883 5.32757 5.34701 5.40988 5.49991 5.58344 5.70053 5.76397 6.05235 6.21492 6.33211 6.46664 6.96052 7.53284 9.01246 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.003663 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.787559 B = 7642.051131 C = 8405.324891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.199 3.801 3 C 0.060 3.940 4 C -0.615 4.615 5 S 2.593 3.407 6 O -0.973 6.973 7 O -0.985 6.985 8 N -0.996 5.996 9 C 0.121 3.879 10 C -0.127 4.127 11 C -0.107 4.107 12 C 0.038 3.962 13 H 0.020 0.980 14 C -0.534 4.534 15 H 0.054 0.946 16 C 0.023 3.977 17 N -0.910 5.910 18 Si 0.944 3.056 19 H -0.282 1.282 20 H -0.285 1.285 21 H -0.269 1.269 22 C 0.135 3.865 23 C -0.100 4.100 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.149 4.149 28 H 0.163 0.837 29 H 0.184 0.816 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.042 0.958 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.064 0.936 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 -5.654 13.562 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.120 4.120 3 C 0.055 3.945 4 C -0.748 4.748 5 S 2.691 3.309 6 O -0.963 6.963 7 O -0.976 6.976 8 N -0.834 5.834 9 C -0.004 4.004 10 C -0.166 4.166 11 C -0.145 4.145 12 C 0.018 3.982 13 H 0.038 0.962 14 C -0.573 4.573 15 H 0.072 0.928 16 C -0.176 4.176 17 N -0.549 5.549 18 Si 0.771 3.229 19 H -0.208 1.208 20 H -0.211 1.211 21 H -0.194 1.194 22 C 0.010 3.990 23 C -0.139 4.139 24 C -0.165 4.165 25 C -0.156 4.156 26 C -0.161 4.161 27 C -0.187 4.187 28 H 0.181 0.819 29 H 0.202 0.798 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.601 -6.265 13.388 16.621 hybrid contribution 1.392 0.609 -0.729 1.686 sum -6.209 -5.656 12.659 15.191 Atomic orbital electron populations 1.81171 1.13860 1.08480 1.07855 1.29581 0.95556 0.93098 0.93719 1.18237 0.79809 0.98145 0.98321 1.30819 1.16248 1.12821 1.14867 1.05301 0.73982 0.74629 0.76994 1.93547 1.78118 1.40326 1.84331 1.93570 1.30830 1.86767 1.86399 1.57560 1.29986 1.42255 1.53582 1.21612 0.93537 0.84343 1.00926 1.22009 0.96483 0.96761 1.01302 1.21426 0.94824 1.01439 0.96834 1.18957 0.91914 0.91187 0.96165 0.96236 1.21487 1.01521 1.00363 1.33918 0.92805 1.25536 1.00932 0.95078 0.96091 1.69976 1.35423 1.05317 1.44183 0.85778 0.80265 0.78270 0.78636 1.20830 1.21111 1.19357 1.21551 0.80615 0.99039 0.97776 1.21770 1.03876 0.99611 0.88613 1.21668 0.99900 0.96042 0.98877 1.21600 1.02408 0.95341 0.96259 1.21605 0.99797 1.00165 0.94558 1.22319 1.05081 0.90791 1.00526 0.81911 0.79818 0.91300 0.88836 0.91648 0.90540 0.91689 0.95608 0.93108 0.89956 0.92798 0.89651 0.86295 0.93939 0.88756 0.89205 0.90791 0.89416 0.93946 0.91773 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.27 18.54 20.00 0.37 -13.89 16 2 C 0.20 5.35 9.54 89.44 0.85 6.20 16 3 C 0.06 1.19 0.50 -53.99 -0.03 1.16 16 4 C -0.62 -12.73 5.15 71.98 0.37 -12.36 16 5 S 2.59 79.61 4.60 -56.49 -0.26 79.35 16 6 O -0.97 -33.68 14.35 -127.65 -1.83 -35.52 16 7 O -0.99 -35.55 15.41 -127.65 -1.97 -37.52 16 8 N -1.00 -32.75 3.21 -512.29 -1.65 -34.40 16 9 C 0.12 3.70 6.34 86.51 0.55 4.25 16 10 C -0.13 -4.08 6.10 30.81 0.19 -3.90 16 11 C -0.11 -4.50 4.96 30.62 0.15 -4.34 16 12 C 0.04 1.65 2.25 -11.46 -0.03 1.63 16 13 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 14 C -0.53 -26.76 8.56 25.60 0.22 -26.54 16 15 H 0.05 2.67 7.74 -2.92 -0.02 2.65 16 16 C 0.02 1.17 5.30 84.66 0.45 1.62 16 17 N -0.91 -47.92 11.32 21.45 0.24 -47.68 16 18 Si 0.94 40.80 29.54 68.60 2.03 42.83 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 C 0.13 5.11 5.54 86.36 0.48 5.59 16 23 C -0.10 -1.30 4.71 30.59 0.14 -1.16 16 24 C -0.13 -1.60 5.70 30.60 0.17 -1.42 16 25 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 26 C -0.12 -2.03 5.70 30.59 0.17 -1.86 16 27 C -0.15 -2.87 4.23 30.60 0.13 -2.74 16 28 H 0.16 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.18 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.54 7.09 -2.39 -0.02 2.52 16 32 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 3.14 6.05 -2.39 -0.01 3.12 16 35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.26 13.18 8.31 -92.70 -0.77 12.41 16 37 H 0.08 3.00 7.10 -2.39 -0.02 2.98 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.04 0.70 7.23 -2.39 -0.02 0.68 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.04 0.84 7.23 -2.39 -0.02 0.83 16 47 H 0.06 1.57 5.46 -2.39 -0.01 1.56 16 48 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -67.47 377.14 1.88 -65.59 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.94 Total: 16.31 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 4.01 Total: -35.06 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -1.03 Total: -95.97 kcal Atomic # 8 Polarization: -69.24 SS G_CDS: -3.80 Total: -73.04 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 79.61 SS G_CDS: -0.26 Total: 79.35 kcal Total: -67.47 1.88 -65.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594801499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.868 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds