Wall clock time and date at job start Tue Mar 31 2020 23:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46726 * 299.99523 * 3 2 1 6 6 H 1.48496 * 109.47129 * 59.99391 * 3 2 1 7 7 C 1.37882 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99966 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47200 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00228 * 95.40871 * 10 9 7 12 12 C 1.50700 * 109.47277 * 270.00387 * 11 10 9 13 13 C 1.38679 * 120.41778 * 89.99480 * 12 11 10 14 14 C 1.38626 * 118.42067 * 179.97438 * 13 12 11 15 15 C 1.38231 * 119.15895 * 0.25702 * 14 13 12 16 16 N 1.31856 * 120.76596 * 359.49457 * 15 14 13 17 17 C 1.31884 * 121.72347 * 0.49515 * 16 15 14 18 18 C 1.34778 * 119.99922 * 275.41559 * 10 9 7 19 19 O 1.21275 * 119.99846 * 174.95491 * 18 10 9 20 20 C 1.50701 * 120.00190 * 354.94560 * 18 10 9 21 21 H 1.09003 * 109.47112 * 334.78855 * 20 18 10 22 22 C 1.53000 * 109.47351 * 214.78504 * 20 18 10 23 23 O 1.42893 * 109.47036 * 64.67991 * 22 20 18 24 24 C 1.50703 * 109.46703 * 94.78064 * 20 18 10 25 25 C 1.38232 * 119.99718 * 59.72971 * 24 20 18 26 26 C 1.38237 * 120.00045 * 179.78533 * 25 24 20 27 27 C 1.38239 * 119.99844 * 0.44125 * 26 25 24 28 28 C 1.38234 * 119.99904 * 359.81291 * 27 26 25 29 29 C 1.38231 * 119.99990 * 239.99774 * 24 20 18 30 30 H 0.96999 * 119.99813 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.47270 * 59.99593 * 9 7 2 32 32 H 1.09000 * 109.47194 * 299.99936 * 9 7 2 33 33 H 1.08996 * 109.47115 * 150.00226 * 11 10 9 34 34 H 1.09009 * 109.46915 * 30.00056 * 11 10 9 35 35 H 1.08000 * 120.79098 * 359.96143 * 13 12 11 36 36 H 1.08000 * 120.42379 * 179.97438 * 14 13 12 37 37 H 1.08000 * 119.61476 * 179.74678 * 15 14 13 38 38 H 1.08000 * 119.61800 * 179.75092 * 17 16 15 39 39 H 1.09000 * 109.46698 * 184.68433 * 22 20 18 40 40 H 1.09004 * 109.46848 * 304.67824 * 22 20 18 41 41 H 0.96705 * 113.99812 * 180.02562 * 23 22 20 42 42 H 1.08004 * 120.00020 * 359.97438 * 25 24 20 43 43 H 1.07999 * 120.00442 * 180.27813 * 26 25 24 44 44 H 1.07997 * 119.99925 * 179.83818 * 27 26 25 45 45 H 1.08002 * 120.00553 * 179.97438 * 28 27 26 46 46 H 1.08001 * 120.00563 * 359.97438 * 29 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5881 -4.2473 1.2636 12 6 3.7952 -3.5457 1.8307 13 6 3.6418 -2.4682 2.6901 14 6 4.7805 -1.8539 3.1878 15 6 6.0222 -2.3290 2.8093 16 7 6.1302 -3.3592 1.9936 17 6 5.0690 -3.9681 1.5012 18 6 2.7246 -4.0534 -1.1615 19 8 3.5804 -4.9127 -1.1548 20 6 2.2443 -3.4785 -2.4691 21 1 1.2322 -3.0927 -2.3465 22 6 2.2471 -4.5723 -3.5389 23 8 1.2973 -5.5815 -3.1906 24 6 3.1605 -2.3593 -2.8924 25 6 4.5034 -2.6086 -3.1050 26 6 5.3431 -1.5830 -3.4976 27 6 4.8414 -0.3062 -3.6688 28 6 3.4995 -0.0559 -3.4511 29 6 2.6590 -1.0825 -3.0628 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 2.8275 -5.2956 1.0853 34 1 1.7620 -4.1784 1.9715 35 1 2.6586 -2.1159 2.9650 36 1 4.6986 -1.0118 3.8592 37 1 6.9142 -1.8533 3.1894 38 1 5.1970 -4.8065 0.8325 39 1 1.9798 -4.1387 -4.5025 40 1 3.2410 -5.0153 -3.6029 41 1 1.2454 -6.3088 -3.8259 42 1 4.8961 -3.6052 -2.9673 43 1 6.3914 -1.7786 -3.6681 44 1 5.4979 0.4955 -3.9730 45 1 3.1076 0.9416 -3.5845 46 1 1.6105 -0.8869 -2.8929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596965512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:13 Heat of formation + Delta-G solvation = -21.145280 kcal Electronic energy + Delta-G solvation = -31095.486244 eV Core-core repulsion = 27143.082882 eV Total energy + Delta-G solvation = -3952.403362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.10537 -39.44198 -38.11836 -36.48945 -35.17328 -33.23168 -32.60264 -31.89011 -31.06994 -30.37307 -28.26878 -27.54891 -25.97786 -23.61992 -23.12106 -22.79888 -22.07713 -21.82670 -20.76237 -18.21943 -17.36196 -16.79611 -16.61003 -16.52536 -16.08133 -15.68850 -15.50416 -14.98903 -14.60789 -14.57734 -14.30235 -13.97830 -13.74952 -13.49695 -13.13766 -12.93884 -12.79068 -12.54688 -12.51684 -12.21549 -12.02869 -11.99773 -11.86952 -11.56580 -11.14894 -11.03393 -10.98576 -10.74648 -10.61352 -10.40685 -10.19351 -9.77467 -9.72804 -9.30617 -9.16882 -9.01218 -8.63001 -8.50336 -8.36195 -8.14939 -7.75421 -6.20382 -4.23471 1.54737 1.78563 1.81677 1.95323 3.16289 3.26768 3.33446 3.41975 3.85297 4.22030 4.30904 4.37980 4.56511 4.88414 5.13051 5.16778 5.27091 5.32396 5.36129 5.38813 5.44490 5.49967 5.55920 5.57179 5.63116 5.69654 5.77985 5.89148 5.96502 6.03905 6.10504 6.16747 6.23415 6.26213 6.46351 6.57862 6.61033 6.68739 6.82138 6.93095 7.01911 7.13269 7.17558 7.18979 7.48503 7.50445 7.76673 7.82589 8.04259 8.27050 8.41671 8.81194 8.99827 9.42663 10.86337 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007706 B = 0.006754 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3632.499273 B = 4144.419667 C = 5243.276573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.512 4.512 8 H 0.060 0.940 9 C 0.236 3.764 10 N -0.590 5.590 11 C 0.165 3.835 12 C -0.140 4.140 13 C -0.038 4.038 14 C -0.181 4.181 15 C 0.087 3.913 16 N -0.495 5.495 17 C 0.116 3.884 18 C 0.543 3.457 19 O -0.567 6.567 20 C -0.063 4.063 21 H 0.112 0.888 22 C 0.096 3.904 23 O -0.569 6.569 24 C -0.062 4.062 25 C -0.107 4.107 26 C -0.132 4.132 27 C -0.121 4.121 28 C -0.129 4.129 29 C -0.061 4.061 30 H 0.263 0.737 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.375 0.625 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 -4.442 -3.120 6.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.116 3.884 10 N -0.319 5.319 11 C 0.041 3.959 12 C -0.143 4.143 13 C -0.064 4.064 14 C -0.201 4.201 15 C -0.070 4.070 16 N -0.204 5.204 17 C -0.041 4.041 18 C 0.331 3.669 19 O -0.448 6.448 20 C -0.084 4.084 21 H 0.130 0.870 22 C 0.018 3.982 23 O -0.373 6.373 24 C -0.063 4.063 25 C -0.125 4.125 26 C -0.151 4.151 27 C -0.140 4.140 28 C -0.147 4.147 29 C -0.079 4.079 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.172 0.828 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.222 0.778 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.246 -4.659 -2.816 7.560 hybrid contribution -0.363 1.506 -0.070 1.551 sum 4.883 -3.153 -2.885 6.490 Atomic orbital electron populations 1.69928 1.05774 1.26929 1.50475 1.24786 0.94556 0.98624 0.95167 0.86731 0.80796 0.84195 0.77779 1.19477 1.20694 1.21179 1.21404 0.93424 0.89849 1.50454 0.92201 1.19532 0.87463 0.82846 0.98561 1.48192 1.44759 1.34916 1.04075 1.20117 0.93623 0.96077 0.86107 1.21239 0.96915 0.98100 0.98028 1.21508 0.99315 0.92466 0.93138 1.22044 0.93796 1.01567 1.02700 1.22604 0.96856 0.93151 0.94390 1.67663 1.34069 1.08790 1.09894 1.22731 0.87475 0.98201 0.95738 1.19937 0.80852 0.80941 0.85167 1.90539 1.32595 1.33975 1.87690 1.20163 1.01533 0.93839 0.92895 0.87030 1.22043 0.92385 0.88241 0.95577 1.86502 1.62272 1.35791 1.52764 1.19056 0.93343 0.93602 1.00248 1.21054 0.93130 0.99434 0.98848 1.20946 0.99122 0.93202 1.01785 1.21044 0.95500 0.96576 1.00837 1.21048 0.93804 0.98896 1.00971 1.21075 1.00680 0.91454 0.94696 0.92732 0.94406 0.94626 0.90017 0.90042 0.84651 0.85478 0.83710 0.82817 0.93264 0.92520 0.77846 0.86072 0.86800 0.86936 0.86718 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.03 13.29 55.43 0.74 -22.30 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.88 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -12.23 7.65 -34.44 -0.26 -12.49 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.23 5.01 -5.19 -0.03 5.20 16 10 N -0.59 -11.92 2.45 -176.43 -0.43 -12.36 16 11 C 0.16 2.94 5.56 -5.19 -0.03 2.91 16 12 C -0.14 -2.54 5.48 -104.48 -0.57 -3.11 16 13 C -0.04 -0.66 9.84 -39.28 -0.39 -1.05 16 14 C -0.18 -2.92 10.11 -39.44 -0.40 -3.32 16 15 C 0.09 1.42 11.18 -17.54 -0.20 1.23 16 16 N -0.50 -9.19 10.36 -13.25 -0.14 -9.33 16 17 C 0.12 2.17 10.75 -17.55 -0.19 1.98 16 18 C 0.54 11.01 6.03 -10.98 -0.07 10.95 16 19 O -0.57 -12.06 14.52 5.56 0.08 -11.98 16 20 C -0.06 -1.17 2.08 -92.92 -0.19 -1.36 16 21 H 0.11 2.20 5.55 -51.93 -0.29 1.91 16 22 C 0.10 1.48 5.93 37.16 0.22 1.70 16 23 O -0.57 -8.66 13.40 -35.23 -0.47 -9.13 16 24 C -0.06 -1.14 4.49 -104.63 -0.47 -1.61 16 25 C -0.11 -1.89 8.85 -39.58 -0.35 -2.24 16 26 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 27 C -0.12 -1.97 10.05 -39.58 -0.40 -2.36 16 28 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16 29 C -0.06 -1.15 8.30 -39.58 -0.33 -1.48 16 30 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.04 0.89 5.88 -51.93 -0.31 0.58 16 32 H 0.04 0.83 7.83 -51.93 -0.41 0.42 16 33 H 0.08 1.41 7.45 -51.93 -0.39 1.02 16 34 H 0.08 1.31 7.81 -51.92 -0.41 0.91 16 35 H 0.14 2.33 8.06 -52.49 -0.42 1.90 16 36 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.15 2.90 7.41 -52.49 -0.39 2.51 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.88 7.12 -51.93 -0.37 0.51 16 41 H 0.38 3.67 9.12 45.56 0.42 4.09 16 42 H 0.12 2.15 7.15 -52.48 -0.38 1.77 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 45 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 46 H 0.13 2.56 7.95 -52.49 -0.42 2.15 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -29.64 387.64 -9.38 -39.02 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.43 Total: 13.70 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -4.54 Total: -8.62 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.17 Total: -43.98 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.39 Total: -21.11 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.64 -9.38 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596965512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.875 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds