Wall clock time and date at job start Tue Mar 31 2020 23:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46726 * 299.99523 * 3 2 1 6 6 H 1.48496 * 109.47129 * 59.99391 * 3 2 1 7 7 C 1.37882 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99966 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47200 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00228 * 95.40871 * 10 9 7 12 12 C 1.50700 * 109.47277 * 270.00387 * 11 10 9 13 13 C 1.38679 * 120.41778 * 89.99480 * 12 11 10 14 14 C 1.38626 * 118.42067 * 179.97438 * 13 12 11 15 15 C 1.38231 * 119.15895 * 0.25702 * 14 13 12 16 16 N 1.31856 * 120.76596 * 359.49457 * 15 14 13 17 17 C 1.31884 * 121.72347 * 0.49515 * 16 15 14 18 18 C 1.34778 * 119.99922 * 275.41559 * 10 9 7 19 19 O 1.21275 * 119.99846 * 174.95491 * 18 10 9 20 20 C 1.50701 * 120.00190 * 354.94560 * 18 10 9 21 21 H 1.09003 * 109.47112 * 334.78855 * 20 18 10 22 22 C 1.53000 * 109.47351 * 214.78504 * 20 18 10 23 23 O 1.42893 * 109.47036 * 64.67991 * 22 20 18 24 24 C 1.50703 * 109.46703 * 94.78064 * 20 18 10 25 25 C 1.38232 * 119.99718 * 59.72971 * 24 20 18 26 26 C 1.38237 * 120.00045 * 179.78533 * 25 24 20 27 27 C 1.38239 * 119.99844 * 0.44125 * 26 25 24 28 28 C 1.38234 * 119.99904 * 359.81291 * 27 26 25 29 29 C 1.38231 * 119.99990 * 239.99774 * 24 20 18 30 30 H 0.96999 * 119.99813 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.47270 * 59.99593 * 9 7 2 32 32 H 1.09000 * 109.47194 * 299.99936 * 9 7 2 33 33 H 1.08996 * 109.47115 * 150.00226 * 11 10 9 34 34 H 1.09009 * 109.46915 * 30.00056 * 11 10 9 35 35 H 1.08000 * 120.79098 * 359.96143 * 13 12 11 36 36 H 1.08000 * 120.42379 * 179.97438 * 14 13 12 37 37 H 1.08000 * 119.61476 * 179.74678 * 15 14 13 38 38 H 1.08000 * 119.61800 * 179.75092 * 17 16 15 39 39 H 1.09000 * 109.46698 * 184.68433 * 22 20 18 40 40 H 1.09004 * 109.46848 * 304.67824 * 22 20 18 41 41 H 0.96705 * 113.99812 * 180.02562 * 23 22 20 42 42 H 1.08004 * 120.00020 * 359.97438 * 25 24 20 43 43 H 1.07999 * 120.00442 * 180.27813 * 26 25 24 44 44 H 1.07997 * 119.99925 * 179.83818 * 27 26 25 45 45 H 1.08002 * 120.00553 * 179.97438 * 28 27 26 46 46 H 1.08001 * 120.00563 * 359.97438 * 29 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5881 -4.2473 1.2636 12 6 3.7952 -3.5457 1.8307 13 6 3.6418 -2.4682 2.6901 14 6 4.7805 -1.8539 3.1878 15 6 6.0222 -2.3290 2.8093 16 7 6.1302 -3.3592 1.9936 17 6 5.0690 -3.9681 1.5012 18 6 2.7246 -4.0534 -1.1615 19 8 3.5804 -4.9127 -1.1548 20 6 2.2443 -3.4785 -2.4691 21 1 1.2322 -3.0927 -2.3465 22 6 2.2471 -4.5723 -3.5389 23 8 1.2973 -5.5815 -3.1906 24 6 3.1605 -2.3593 -2.8924 25 6 4.5034 -2.6086 -3.1050 26 6 5.3431 -1.5830 -3.4976 27 6 4.8414 -0.3062 -3.6688 28 6 3.4995 -0.0559 -3.4511 29 6 2.6590 -1.0825 -3.0628 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 2.8275 -5.2956 1.0853 34 1 1.7620 -4.1784 1.9715 35 1 2.6586 -2.1159 2.9650 36 1 4.6986 -1.0118 3.8592 37 1 6.9142 -1.8533 3.1894 38 1 5.1970 -4.8065 0.8325 39 1 1.9798 -4.1387 -4.5025 40 1 3.2410 -5.0153 -3.6029 41 1 1.2454 -6.3088 -3.8259 42 1 4.8961 -3.6052 -2.9673 43 1 6.3914 -1.7786 -3.6681 44 1 5.4979 0.4955 -3.9730 45 1 3.1076 0.9416 -3.5845 46 1 1.6105 -0.8869 -2.8929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596965512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:12 Heat of formation + Delta-G solvation = -38.037008 kcal Electronic energy + Delta-G solvation = -31096.218724 eV Core-core repulsion = 27143.082882 eV Total energy + Delta-G solvation = -3953.135842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.58298 -40.81765 -39.55202 -37.74939 -36.80387 -34.82807 -34.22106 -33.32355 -32.47098 -31.72881 -29.61735 -29.31503 -27.46216 -25.15590 -24.61361 -24.32860 -23.44593 -23.19760 -22.15369 -19.76489 -18.73066 -18.40019 -18.23107 -17.94419 -17.41549 -17.14221 -16.99752 -16.47707 -16.33087 -15.95724 -15.67852 -15.33797 -15.20155 -14.87410 -14.51798 -14.35638 -14.26037 -14.14798 -13.89292 -13.68287 -13.58201 -13.48055 -13.31744 -13.25969 -12.79537 -12.67232 -12.50988 -12.28417 -12.07576 -11.95221 -11.73395 -11.61863 -11.01183 -10.79777 -10.64831 -10.46820 -10.39894 -9.92084 -9.73942 -9.55414 -9.40149 -8.13464 -6.19628 0.19558 0.41951 0.45349 0.58472 1.33026 1.40341 1.49036 1.82420 2.31389 2.45873 2.89503 3.00958 3.19084 3.31050 3.58332 3.70855 3.92927 3.95782 4.01698 4.09623 4.14750 4.18808 4.21057 4.24394 4.30352 4.36270 4.49894 4.60722 4.64121 4.65072 4.74071 4.79904 4.85778 4.90092 4.96274 5.13180 5.21071 5.27153 5.30188 5.44306 5.60000 5.66228 5.71860 5.77501 5.84594 5.87690 6.14213 6.15916 6.57924 6.89798 6.91258 7.05643 7.35274 7.49889 8.93013 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007706 B = 0.006754 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3632.499273 B = 4144.419667 C = 5243.276573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.043 3.957 3 Si 0.918 3.082 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.492 4.492 8 H 0.038 0.962 9 C 0.251 3.749 10 N -0.594 5.594 11 C 0.162 3.838 12 C -0.148 4.148 13 C -0.050 4.050 14 C -0.178 4.178 15 C 0.085 3.915 16 N -0.513 5.513 17 C 0.103 3.897 18 C 0.538 3.462 19 O -0.579 6.579 20 C -0.064 4.064 21 H 0.093 0.907 22 C 0.103 3.897 23 O -0.587 6.587 24 C -0.070 4.070 25 C -0.117 4.117 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.139 4.139 29 C -0.078 4.078 30 H 0.264 0.736 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.145 0.855 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.399 0.601 42 H 0.118 0.882 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.125 0.875 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 -3.509 -3.224 7.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.158 4.158 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.200 1.200 6 H -0.211 1.211 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.131 3.869 10 N -0.323 5.323 11 C 0.039 3.961 12 C -0.151 4.151 13 C -0.077 4.077 14 C -0.197 4.197 15 C -0.072 4.072 16 N -0.222 5.222 17 C -0.053 4.053 18 C 0.327 3.673 19 O -0.460 6.460 20 C -0.085 4.085 21 H 0.111 0.889 22 C 0.025 3.975 23 O -0.396 6.396 24 C -0.071 4.071 25 C -0.135 4.135 26 C -0.148 4.148 27 C -0.137 4.137 28 C -0.157 4.157 29 C -0.096 4.096 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.153 0.847 36 H 0.175 0.825 37 H 0.197 0.803 38 H 0.162 0.838 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.249 0.751 42 H 0.136 0.864 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.143 0.857 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.748 -3.752 -2.932 8.258 hybrid contribution -0.783 1.189 -0.019 1.424 sum 5.965 -2.563 -2.951 7.131 Atomic orbital electron populations 1.69985 1.06600 1.27386 1.51693 1.25165 0.94907 1.00429 0.95254 0.86097 0.79257 0.82140 0.77917 1.20443 1.19963 1.21138 1.21195 0.92031 0.90468 1.49370 0.94350 1.19196 0.87382 0.83029 0.97320 1.48191 1.44463 1.34520 1.05115 1.20254 0.94289 0.96071 0.85523 1.21215 0.96645 0.98627 0.98584 1.21659 1.00069 0.92574 0.93402 1.22394 0.93113 1.01847 1.02357 1.23198 0.98355 0.92306 0.93378 1.67667 1.34062 1.09754 1.10719 1.22639 0.87913 0.98514 0.96278 1.20284 0.80583 0.80731 0.85710 1.90521 1.33091 1.34495 1.87941 1.20177 1.00344 0.94942 0.93009 0.88895 1.21946 0.92541 0.87700 0.95287 1.86443 1.62112 1.36734 1.54287 1.19075 0.93809 0.93414 1.00760 1.21129 0.92988 0.99909 0.99458 1.21298 1.00300 0.92812 1.00410 1.21397 0.95214 0.97444 0.99692 1.21270 0.94550 0.98993 1.00857 1.20992 1.00095 0.92231 0.96311 0.92691 0.95725 0.95632 0.89690 0.88619 0.84677 0.82519 0.80282 0.83762 0.91088 0.92529 0.75131 0.86386 0.84046 0.83757 0.85745 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.51 13.29 21.45 0.28 -47.23 16 2 C 0.04 2.10 5.46 84.65 0.46 2.56 16 3 Si 0.92 40.78 29.54 68.60 2.03 42.81 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.49 -23.64 7.65 25.60 0.20 -23.44 16 8 H 0.04 2.02 7.81 -2.91 -0.02 2.00 16 9 C 0.25 11.39 5.01 85.63 0.43 11.82 16 10 N -0.59 -24.40 2.45 -830.49 -2.04 -26.44 16 11 C 0.16 5.84 5.56 85.63 0.48 6.31 16 12 C -0.15 -5.36 5.48 -19.77 -0.11 -5.47 16 13 C -0.05 -1.73 9.84 22.47 0.22 -1.51 16 14 C -0.18 -5.34 10.11 22.36 0.23 -5.11 16 15 C 0.08 2.58 11.18 84.69 0.95 3.52 16 16 N -0.51 -18.49 10.36 -195.84 -2.03 -20.52 16 17 C 0.10 3.86 10.75 84.67 0.91 4.77 16 18 C 0.54 22.14 6.03 87.66 0.53 22.66 16 19 O -0.58 -24.83 14.52 -3.01 -0.04 -24.88 16 20 C -0.06 -2.39 2.08 -12.28 -0.03 -2.41 16 21 H 0.09 3.80 5.55 -2.39 -0.01 3.79 16 22 C 0.10 3.16 5.93 71.98 0.43 3.59 16 23 O -0.59 -17.58 13.40 -148.98 -2.00 -19.57 16 24 C -0.07 -2.59 4.49 -19.87 -0.09 -2.68 16 25 C -0.12 -4.05 8.85 22.27 0.20 -3.85 16 26 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 27 C -0.12 -3.57 10.05 22.27 0.22 -3.35 16 28 C -0.14 -4.70 10.05 22.27 0.22 -4.48 16 29 C -0.08 -2.95 8.30 22.27 0.18 -2.77 16 30 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 31 H 0.02 1.20 5.88 -2.38 -0.01 1.19 16 32 H 0.03 1.21 7.83 -2.39 -0.02 1.19 16 33 H 0.08 2.97 7.45 -2.39 -0.02 2.96 16 34 H 0.10 3.10 7.81 -2.38 -0.02 3.08 16 35 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.15 5.56 7.41 -2.91 -0.02 5.54 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.73 7.12 -2.38 -0.02 1.71 16 41 H 0.40 7.34 9.12 -74.05 -0.68 6.66 16 42 H 0.12 4.12 7.15 -2.91 -0.02 4.10 16 43 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 44 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 45 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 46 H 0.11 4.54 7.95 -2.91 -0.02 4.51 16 Total: -1.00 -62.69 387.64 2.18 -60.51 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: 0.33 Total: 38.88 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 5.65 Total: -3.56 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -3.78 Total: -94.19 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -2.04 Total: -44.45 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -62.69 2.18 -60.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596965512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.473 kcal (2) G-P(sol) polarization free energy of solvation -62.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds