Wall clock time and date at job start Tue Mar 31 2020 22:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00061 * 2 1 4 4 H 1.48499 * 109.47476 * 239.99660 * 3 2 1 5 5 H 1.48507 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47443 * 119.99143 * 3 2 1 7 7 C 1.37878 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99868 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.52701 * 60.08033 * 9 7 2 11 11 C 1.53049 * 109.49500 * 180.15914 * 9 7 2 12 12 C 1.53038 * 109.53503 * 181.31599 * 11 9 7 13 13 C 1.53625 * 109.24416 * 298.51139 * 12 11 9 14 14 N 1.46928 * 108.54475 * 54.85481 * 13 12 11 15 15 C 1.34771 * 120.62886 * 126.37032 * 14 13 12 16 16 O 1.21286 * 119.99945 * 179.72678 * 15 14 13 17 17 C 1.50697 * 120.00126 * 359.72248 * 15 14 13 18 18 N 1.46506 * 109.47157 * 180.02562 * 17 15 14 19 19 C 1.36535 * 118.86457 * 89.99900 * 18 17 15 20 20 C 1.34291 * 122.41090 * 180.02562 * 19 18 17 21 21 C 1.46366 * 119.41895 * 359.97438 * 20 19 18 22 22 C 1.39576 * 122.04308 * 180.02562 * 21 20 19 23 23 C 1.36729 * 119.49370 * 179.72115 * 22 21 20 24 24 C 1.38895 * 120.88604 * 0.52127 * 23 22 21 25 25 C 1.36756 * 120.88971 * 359.47273 * 24 23 22 26 26 C 1.39467 * 119.50303 * 0.25868 * 25 24 23 27 27 C 1.34788 * 118.85998 * 270.02155 * 18 17 15 28 28 O 1.21796 * 120.38254 * 0.02562 * 27 18 17 29 29 C 1.46930 * 118.73929 * 306.10179 * 14 13 12 30 30 H 0.96998 * 120.00148 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.45749 * 301.33751 * 11 9 7 32 32 H 1.08994 * 109.45617 * 61.30817 * 11 9 7 33 33 H 1.09001 * 109.49878 * 58.58716 * 12 11 9 34 34 H 1.09001 * 109.49484 * 178.64996 * 12 11 9 35 35 H 1.09003 * 109.73935 * 295.12231 * 13 12 11 36 36 H 1.08992 * 109.66802 * 174.55055 * 13 12 11 37 37 H 1.08996 * 109.47141 * 60.00349 * 17 15 14 38 38 H 1.09000 * 109.46997 * 299.99576 * 17 15 14 39 39 H 1.08002 * 118.79407 * 0.04594 * 19 18 17 40 40 H 1.07998 * 120.29039 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.24867 * 359.96157 * 22 21 20 42 42 H 1.07996 * 119.55292 * 180.27372 * 23 22 21 43 43 H 1.08002 * 119.55685 * 179.75783 * 24 23 22 44 44 H 1.08003 * 120.24529 * 180.23463 * 25 24 23 45 45 H 1.08996 * 109.58848 * 173.64808 * 29 14 13 46 46 H 1.09003 * 109.58125 * 294.06917 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5587 -0.8900 11 6 2.2451 -3.6629 0.0052 12 6 1.4812 -4.9886 -0.0279 13 6 0.6029 -5.0984 1.2277 14 7 -0.2564 -3.9089 1.3024 15 6 -1.5931 -4.0338 1.4214 16 8 -2.2912 -3.0442 1.4870 17 6 -2.2203 -5.4031 1.4728 18 7 -3.6735 -5.2701 1.6024 19 6 -4.4332 -5.2064 0.4698 20 6 -5.7700 -5.0839 0.5057 21 6 -6.4512 -5.0155 1.7993 22 6 -7.8375 -4.8887 1.9005 23 6 -8.4203 -4.8353 3.1362 24 6 -7.6503 -4.8948 4.2907 25 6 -6.2902 -5.0191 4.2219 26 6 -5.6684 -5.0814 2.9751 27 6 -4.2142 -5.2143 2.8358 28 8 -3.5036 -5.2733 3.8232 29 6 0.3697 -2.5807 1.2508 30 1 -0.4850 0.8400 -0.0004 31 1 2.8897 -3.5932 -0.8709 32 1 2.8535 -3.6170 0.9083 33 1 0.8534 -5.0246 -0.9183 34 1 2.1899 -5.8164 -0.0488 35 1 1.2339 -5.1495 2.1150 36 1 -0.0164 -5.9931 1.1651 37 1 -1.8274 -5.9508 2.3293 38 1 -1.9858 -5.9448 0.5564 39 1 -3.9410 -5.2567 -0.4903 40 1 -6.3375 -5.0362 -0.4120 41 1 -8.4456 -4.8370 1.0094 42 1 -9.4932 -4.7417 3.2156 43 1 -8.1327 -4.8469 5.2558 44 1 -5.7019 -5.0682 5.1264 45 1 -0.4035 -1.8138 1.2036 46 1 0.9821 -2.4307 2.1400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:09 Heat of formation + Delta-G solvation = -25.126482 kcal Electronic energy + Delta-G solvation = -29445.982815 eV Core-core repulsion = 25493.406815 eV Total energy + Delta-G solvation = -3952.576000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.32015 -39.48378 -38.37685 -36.98890 -36.45394 -33.53868 -32.98304 -31.83750 -31.44481 -29.98785 -29.42666 -28.09296 -25.10940 -24.65325 -23.91526 -23.29803 -21.88082 -21.76604 -20.04286 -18.56786 -18.32082 -17.92920 -17.27660 -16.97932 -16.15950 -15.54477 -15.23907 -15.19308 -14.90455 -14.70742 -14.59769 -14.27473 -13.96193 -13.76443 -13.43434 -13.33818 -12.90214 -12.79018 -12.74506 -12.62174 -12.43121 -11.99252 -11.81141 -11.76043 -11.67792 -11.18033 -11.03701 -10.94126 -10.56328 -10.46845 -10.27341 -10.06430 -9.94214 -9.80546 -9.31536 -9.17433 -9.15503 -8.90462 -8.46029 -7.82260 -7.74723 -6.02169 -4.11249 0.67450 0.87364 2.15178 2.49313 2.87553 3.08723 3.30564 3.36926 3.37898 3.64841 3.96506 4.35220 4.40972 4.48101 4.66112 4.75378 4.80200 4.91715 4.95291 5.13432 5.18519 5.22394 5.24668 5.28082 5.41325 5.48320 5.58988 5.71769 5.77614 5.83599 5.92005 6.08793 6.14762 6.25024 6.30099 6.31276 6.47744 6.54381 6.61555 6.74635 6.80377 6.92278 7.09005 7.13560 7.21692 7.59487 7.82340 7.90721 7.95504 8.16856 8.35164 8.73979 8.92666 9.54665 11.02995 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.002889 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.094943 B = 9688.437596 C =10597.903356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.042 3.958 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.133 4.133 13 C 0.106 3.894 14 N -0.602 5.602 15 C 0.491 3.509 16 O -0.524 6.524 17 C 0.074 3.926 18 N -0.502 5.502 19 C 0.134 3.866 20 C -0.214 4.214 21 C 0.013 3.987 22 C -0.129 4.129 23 C -0.085 4.085 24 C -0.145 4.145 25 C -0.047 4.047 26 C -0.151 4.151 27 C 0.552 3.448 28 O -0.525 6.525 29 C 0.113 3.887 30 H 0.264 0.736 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.135 0.865 45 H 0.123 0.877 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.636 -16.043 1.656 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.023 3.977 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.171 4.171 13 C -0.018 4.018 14 N -0.336 5.336 15 C 0.276 3.724 16 O -0.400 6.400 17 C -0.051 4.051 18 N -0.216 5.216 19 C 0.013 3.987 20 C -0.237 4.237 21 C 0.011 3.989 22 C -0.147 4.147 23 C -0.104 4.104 24 C -0.164 4.164 25 C -0.066 4.066 26 C -0.154 4.154 27 C 0.347 3.653 28 O -0.403 6.403 29 C -0.007 4.007 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.153 0.847 45 H 0.140 0.860 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.679 -15.408 2.313 20.088 hybrid contribution 0.604 0.992 -0.139 1.170 sum -12.075 -14.417 2.174 18.930 Atomic orbital electron populations 1.69867 1.05752 1.27012 1.49120 1.25056 0.94888 0.99302 0.94767 0.86643 0.79573 0.83125 0.78585 1.20267 1.21242 1.20223 1.21033 0.92882 0.90105 1.52112 0.92378 1.18958 0.92560 0.92343 0.93887 0.95367 1.21635 0.98602 0.94014 1.00693 1.22020 0.98642 0.99249 0.97194 1.21785 0.93692 0.87355 0.98930 1.48498 1.04854 1.09263 1.70937 1.20507 0.83116 0.90580 0.78189 1.90762 1.61059 1.38917 1.49280 1.21879 0.79334 0.97983 1.05937 1.44660 1.07458 1.63244 1.06225 1.21436 0.92194 0.94850 0.90192 1.21364 0.92744 1.12903 0.96736 1.19134 0.93493 0.94085 0.92202 1.20847 0.93167 1.02549 0.98163 1.21027 1.00121 0.96746 0.92467 1.20864 0.93572 1.03078 0.98846 1.20819 0.94693 0.94479 0.96560 1.19823 0.91871 1.09182 0.94567 1.18104 0.88434 0.76658 0.82097 1.90856 1.62974 1.50064 1.36378 1.22332 0.98694 0.81037 0.98631 0.92571 0.92918 0.93101 0.92097 0.92078 0.91580 0.91373 0.86102 0.86675 0.82577 0.83438 0.85103 0.85675 0.85539 0.84746 0.85956 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 11.39 55.43 0.63 -25.04 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.04 8.56 -34.44 -0.29 -14.33 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.14 5.10 -26.69 -0.14 -2.27 16 12 C -0.13 -1.97 6.10 -26.39 -0.16 -2.13 16 13 C 0.11 1.54 6.37 -3.48 -0.02 1.52 16 14 N -0.60 -11.78 2.97 -172.50 -0.51 -12.29 16 15 C 0.49 9.72 7.76 -10.99 -0.09 9.64 16 16 O -0.52 -13.01 15.84 5.55 0.09 -12.92 16 17 C 0.07 1.05 4.10 -5.19 -0.02 1.03 16 18 N -0.50 -7.55 2.10 -119.03 -0.25 -7.79 16 19 C 0.13 1.64 10.16 -16.85 -0.17 1.47 16 20 C -0.21 -2.40 10.03 -37.71 -0.38 -2.78 16 21 C 0.01 0.16 5.89 -104.92 -0.62 -0.46 16 22 C -0.13 -1.30 9.83 -39.63 -0.39 -1.69 16 23 C -0.09 -0.78 9.96 -39.88 -0.40 -1.18 16 24 C -0.15 -1.48 9.96 -39.87 -0.40 -1.88 16 25 C -0.05 -0.61 9.62 -39.66 -0.38 -0.99 16 26 C -0.15 -2.25 5.90 -104.82 -0.62 -2.87 16 27 C 0.55 9.43 7.61 -12.85 -0.10 9.33 16 28 O -0.52 -10.30 16.06 5.10 0.08 -10.21 16 29 C 0.11 2.73 5.40 -3.71 -0.02 2.71 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.74 5.93 -51.93 -0.31 0.43 16 37 H 0.12 1.62 7.14 -51.93 -0.37 1.25 16 38 H 0.12 1.15 7.52 -51.93 -0.39 0.76 16 39 H 0.16 1.44 7.98 -52.49 -0.42 1.03 16 40 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.13 1.71 7.80 -52.48 -0.41 1.30 16 45 H 0.12 3.50 5.12 -51.93 -0.27 3.23 16 46 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -35.46 375.89 -10.16 -45.63 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.36 Total: 3.13 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -4.49 Total: -2.44 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.13 Total: -45.12 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.17 Total: -23.13 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.46 -10.16 -45.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.500 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds