Wall clock time and date at job start Tue Mar 31 2020 23:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86802 * 119.99692 * 2 1 4 4 H 1.48499 * 109.46942 * 89.99936 * 3 2 1 5 5 H 1.48499 * 109.46828 * 210.00099 * 3 2 1 6 6 H 1.48494 * 109.47138 * 329.99819 * 3 2 1 7 7 C 1.40271 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99673 * 160.94854 * 7 2 1 9 9 C 1.40884 * 120.00279 * 340.93457 * 7 2 1 10 10 C 1.40710 * 120.33171 * 325.85899 * 9 7 2 11 11 C 1.37600 * 119.88409 * 179.97438 * 10 9 7 12 12 C 1.38826 * 120.56680 * 0.02562 * 11 10 9 13 13 C 1.38215 * 120.67954 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.09334 * 359.72191 * 13 12 11 15 15 C 1.47428 * 120.28289 * 180.27999 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.04394 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.04276 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47087 * 179.97438 * 18 17 15 20 20 H 1.09004 * 109.47497 * 305.00182 * 19 18 17 21 21 C 1.53004 * 109.46945 * 64.99891 * 19 18 17 22 22 O 1.42901 * 109.46910 * 184.99870 * 21 19 18 23 23 C 1.53005 * 109.47187 * 185.00062 * 19 18 17 24 24 C 1.50701 * 109.47027 * 175.00091 * 23 19 18 25 25 C 1.38674 * 120.41809 * 89.99793 * 24 23 19 26 26 C 1.38629 * 118.42122 * 180.02562 * 25 24 23 27 27 C 1.38223 * 119.15932 * 0.02562 * 26 25 24 28 28 N 1.31854 * 120.76402 * 359.97438 * 27 26 25 29 29 C 1.31882 * 121.72747 * 359.70942 * 28 27 26 30 30 H 0.97004 * 119.99909 * 174.75901 * 1 2 3 31 31 H 1.07997 * 120.05663 * 359.97205 * 10 9 7 32 32 H 1.07994 * 119.71280 * 179.97438 * 11 10 9 33 33 H 1.08006 * 119.65877 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.95764 * 180.02562 * 13 12 11 35 35 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 36 36 H 1.08997 * 109.47246 * 299.99875 * 18 17 15 37 37 H 1.09003 * 109.47046 * 60.00341 * 18 17 15 38 38 H 1.08992 * 109.47268 * 304.99676 * 21 19 18 39 39 H 1.09002 * 109.46879 * 65.00248 * 21 19 18 40 40 H 0.96703 * 114.00207 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.46948 * 295.00002 * 23 19 18 42 42 H 1.08995 * 109.47233 * 55.00228 * 23 19 18 43 43 H 1.08005 * 120.79047 * 359.97438 * 25 24 23 44 44 H 1.08000 * 120.41547 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.61789 * 179.97438 * 27 26 25 46 46 H 1.08004 * 119.61977 * 180.31137 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4877 2.0465 1.4001 5 1 3.5378 1.4402 -0.7001 6 1 1.4377 2.6526 -0.7000 7 6 2.0077 -1.2148 -0.0005 8 1 3.0433 -1.2402 -0.3059 9 6 1.3612 -2.4016 0.3975 10 6 0.3813 -2.3729 1.4069 11 6 -0.2446 -3.5375 1.7881 12 6 0.0822 -4.7446 1.1853 13 6 1.0411 -4.7997 0.1914 14 6 1.6875 -3.6373 -0.2203 15 6 2.7065 -3.6903 -1.2844 16 8 3.2291 -2.6650 -1.6775 17 7 3.0591 -4.8751 -1.8214 18 6 4.0722 -4.9278 -2.8783 19 6 4.2851 -6.3805 -3.3087 20 1 4.5349 -6.9850 -2.4367 21 6 3.0030 -6.9156 -3.9498 22 8 3.1623 -8.3045 -4.2459 23 6 5.4294 -6.4498 -4.3220 24 6 5.7206 -7.8908 -4.6531 25 6 5.0656 -8.5161 -5.7034 26 6 5.3649 -9.8430 -5.9713 27 6 6.2991 -10.4941 -5.1878 28 7 6.9026 -9.8676 -4.1969 29 6 6.6473 -8.6043 -3.9173 30 1 -0.4850 -0.8366 -0.0767 31 1 0.1210 -1.4385 1.8816 32 1 -0.9959 -3.5124 2.5634 33 1 -0.4180 -5.6500 1.4962 34 1 1.2860 -5.7451 -0.2699 35 1 2.6426 -5.6930 -1.5076 36 1 3.7364 -4.3408 -3.7331 37 1 5.0105 -4.5193 -2.5030 38 1 2.1696 -6.7845 -3.2597 39 1 2.8017 -6.3685 -4.8709 40 1 2.3863 -8.7109 -4.6556 41 1 5.1432 -5.9190 -5.2300 42 1 6.3201 -5.9877 -3.8964 43 1 4.3390 -7.9824 -6.2980 44 1 4.8742 -10.3613 -6.7818 45 1 6.5376 -11.5279 -5.3897 46 1 7.1653 -8.1231 -3.1008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601528713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:44 Heat of formation + Delta-G solvation = -62.800053 kcal Electronic energy + Delta-G solvation = -28595.558241 eV Core-core repulsion = 24641.348592 eV Total energy + Delta-G solvation = -3954.209648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.18264 -40.77265 -39.10986 -38.34941 -36.31092 -35.80394 -34.67597 -32.96059 -32.20072 -31.48155 -30.96370 -27.57984 -27.08003 -26.47014 -24.34364 -24.12742 -23.05061 -22.62962 -21.53527 -20.98370 -19.94593 -18.53934 -17.88458 -17.79807 -17.36331 -17.00945 -16.52984 -16.36757 -16.10962 -15.93112 -15.66591 -15.49868 -15.34825 -15.10848 -14.60937 -14.42964 -14.20675 -13.92560 -13.88013 -13.76809 -13.49581 -13.29488 -13.15540 -12.90529 -12.69015 -12.50408 -12.46499 -12.10667 -12.05497 -11.94266 -11.67822 -11.45645 -11.10589 -10.96430 -10.37587 -10.23358 -10.19537 -10.00974 -9.65056 -9.61229 -9.50215 -9.10091 -6.46483 0.34557 0.39411 0.60475 0.89637 1.46550 1.62125 1.77066 2.25029 2.30760 2.39619 2.74305 3.04401 3.23045 3.55684 3.63367 3.75325 3.89490 4.04555 4.13708 4.19236 4.25195 4.28206 4.30483 4.35118 4.43994 4.51284 4.58090 4.65253 4.72784 4.74126 4.82354 4.86354 4.89225 5.00941 5.09223 5.13416 5.21008 5.36981 5.42328 5.55160 5.57916 5.65358 5.70581 5.89019 5.96425 5.98069 6.19750 6.32888 6.67003 6.84737 6.89073 6.91642 7.19545 7.59969 8.04517 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.002413 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.767915 B =11599.052456 C =12570.022825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C -0.003 4.003 3 Si 1.117 2.883 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.094 3.906 10 C -0.225 4.225 11 C -0.073 4.073 12 C -0.245 4.245 13 C -0.041 4.041 14 C -0.283 4.283 15 C 0.558 3.442 16 O -0.577 6.577 17 N -0.728 5.728 18 C 0.132 3.868 19 C -0.078 4.078 20 H 0.078 0.922 21 C 0.082 3.918 22 O -0.567 6.567 23 C -0.064 4.064 24 C -0.119 4.119 25 C -0.025 4.025 26 C -0.177 4.177 27 C 0.073 3.927 28 N -0.523 5.523 29 C 0.077 3.923 30 H 0.283 0.717 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.404 0.596 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.388 0.612 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.166 0.834 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.563 -17.435 -11.457 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.219 4.219 3 Si 0.935 3.065 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.536 4.536 8 H 0.099 0.901 9 C 0.090 3.910 10 C -0.245 4.245 11 C -0.091 4.091 12 C -0.264 4.264 13 C -0.060 4.060 14 C -0.288 4.288 15 C 0.351 3.649 16 O -0.459 6.459 17 N -0.382 5.382 18 C 0.008 3.992 19 C -0.097 4.097 20 H 0.097 0.903 21 C 0.004 3.996 22 O -0.375 6.375 23 C -0.102 4.102 24 C -0.121 4.121 25 C -0.051 4.051 26 C -0.196 4.196 27 C -0.083 4.083 28 N -0.233 5.233 29 C -0.079 4.079 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.241 0.759 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.238 0.762 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.161 0.839 44 H 0.173 0.827 45 H 0.183 0.817 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.888 -15.429 -10.939 20.129 hybrid contribution -1.365 -1.478 -0.321 2.037 sum 5.523 -16.907 -11.260 21.051 Atomic orbital electron populations 1.70474 1.08609 1.33130 1.31977 1.28460 0.95858 1.07382 0.90161 0.82987 0.74518 0.69949 0.79048 1.18106 1.19863 1.19206 1.21117 1.01024 0.93491 1.37988 0.90067 1.17919 0.90419 0.93053 0.89568 1.21214 1.04175 0.97793 1.01299 1.21155 0.97297 0.92651 0.98018 1.20805 1.04522 0.97622 1.03457 1.21122 0.93892 0.95857 0.95121 1.19810 1.08371 0.95791 1.04805 1.18387 0.81815 0.83007 0.81685 1.90668 1.56512 1.34900 1.63800 1.45797 1.43497 1.08430 1.40526 1.21247 0.91530 0.96380 0.90012 1.21252 0.95705 0.93545 0.99227 0.90315 1.22105 0.95842 0.82706 0.98914 1.86661 1.43544 1.22961 1.84338 1.20446 0.98101 0.92206 0.99465 1.20648 0.97365 0.97187 0.96893 1.21458 0.94759 0.94426 0.94417 1.22311 0.99650 0.95758 1.01906 1.23051 0.93506 1.00728 0.91051 1.67607 1.26868 1.10565 1.18214 1.22722 0.96215 0.90212 0.98778 0.90464 0.89293 0.85835 0.84685 0.84944 0.75893 0.92195 0.92173 0.93904 0.92433 0.76206 0.89406 0.89963 0.83879 0.82685 0.81709 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.44 12.57 21.88 0.27 -45.16 16 2 C 0.00 -0.18 5.04 85.37 0.43 0.25 16 3 Si 1.12 46.93 29.98 68.60 2.06 48.98 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.51 -29.18 7.66 23.41 0.18 -29.00 16 8 H 0.08 4.94 5.91 -2.91 -0.02 4.93 16 9 C 0.09 5.12 5.18 -21.11 -0.11 5.01 16 10 C -0.23 -11.34 7.86 22.72 0.18 -11.16 16 11 C -0.07 -3.03 10.01 22.26 0.22 -2.81 16 12 C -0.25 -9.16 10.03 22.41 0.22 -8.94 16 13 C -0.04 -1.59 9.53 22.50 0.21 -1.37 16 14 C -0.28 -13.44 5.92 -19.70 -0.12 -13.56 16 15 C 0.56 25.21 7.73 86.66 0.67 25.88 16 16 O -0.58 -30.90 13.55 -4.09 -0.06 -30.95 16 17 N -0.73 -23.25 5.18 -466.37 -2.42 -25.67 16 18 C 0.13 3.45 5.06 86.38 0.44 3.88 16 19 C -0.08 -1.46 2.26 -10.79 -0.02 -1.48 16 20 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 21 C 0.08 1.29 6.24 71.98 0.45 1.74 16 22 O -0.57 -7.85 9.06 -148.98 -1.35 -9.20 16 23 C -0.06 -1.03 4.86 29.85 0.15 -0.89 16 24 C -0.12 -2.10 4.26 -19.77 -0.08 -2.19 16 25 C -0.02 -0.36 6.80 22.47 0.15 -0.21 16 26 C -0.18 -2.42 10.11 22.36 0.23 -2.20 16 27 C 0.07 1.29 11.18 84.69 0.95 2.24 16 28 N -0.52 -12.07 10.36 -195.85 -2.03 -14.10 16 29 C 0.08 1.62 10.86 84.67 0.92 2.54 16 30 H 0.28 16.18 6.54 -92.71 -0.61 15.57 16 31 H 0.09 4.70 6.93 -2.91 -0.02 4.68 16 32 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 33 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.13 3.87 6.41 -2.91 -0.02 3.85 16 35 H 0.40 10.69 5.69 -92.71 -0.53 10.16 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 0.73 7.07 -2.39 -0.02 0.71 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.39 2.56 9.12 -74.05 -0.68 1.88 16 41 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16 42 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 43 H 0.14 1.52 7.83 -2.91 -0.02 1.49 16 44 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 45 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -73.90 377.17 1.53 -72.38 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: -0.02 Total: 35.96 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 5.06 Total: -32.23 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -4.17 Total: -84.93 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.40 Total: -40.15 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.06 Total: 48.98 kcal Total: -73.90 1.53 -72.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601528713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.577 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds