Wall clock time and date at job start Tue Mar 31 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86801 * 119.99662 * 2 1 4 4 H 1.48497 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47414 * 300.00096 * 3 2 1 6 6 H 1.48496 * 109.47171 * 60.00419 * 3 2 1 7 7 C 1.39004 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 165.94867 * 7 2 1 9 9 N 1.36887 * 120.00222 * 345.95433 * 7 2 1 10 10 C 1.38212 * 125.62048 * 140.88667 * 9 7 2 11 11 C 1.46881 * 125.43957 * 359.95667 * 10 9 7 12 12 O 1.21671 * 119.99956 * 6.33830 * 11 10 9 13 13 N 1.34774 * 120.00300 * 186.34596 * 11 10 9 14 14 C 1.47149 * 125.60350 * 354.85505 * 13 11 10 15 15 C 1.54604 * 107.33367 * 179.07608 * 14 13 11 16 16 C 1.53589 * 102.76914 * 339.21990 * 15 14 13 17 17 C 1.52989 * 111.90624 * 154.54946 * 16 15 14 18 18 C 1.54853 * 103.48808 * 121.57467 * 17 16 15 19 19 O 1.44867 * 104.91049 * 23.72690 * 18 17 16 20 20 C 1.44797 * 105.39513 * 320.51412 * 19 18 17 21 21 C 1.47730 * 125.60532 * 174.85469 * 13 11 10 22 22 C 1.36126 * 109.12595 * 180.22049 * 10 9 7 23 23 C 1.41706 * 107.74778 * 359.61682 * 22 10 9 24 24 C 1.40019 * 133.35087 * 180.09935 * 23 22 10 25 25 C 1.36573 * 119.82940 * 180.28111 * 24 23 22 26 26 C 1.38851 * 120.60261 * 0.02562 * 25 24 23 27 27 C 1.37840 * 120.63332 * 0.02562 * 26 25 24 28 28 C 1.37835 * 125.62117 * 320.86029 * 9 7 2 29 29 H 0.96996 * 120.00017 * 5.02376 * 1 2 3 30 30 H 1.09000 * 109.87098 * 59.64146 * 14 13 11 31 31 H 1.08997 * 109.87278 * 298.51434 * 14 13 11 32 32 H 1.09005 * 110.75391 * 220.89612 * 15 14 13 33 33 H 1.09009 * 110.75111 * 97.54027 * 15 14 13 34 34 H 1.08997 * 110.61971 * 240.07623 * 17 16 15 35 35 H 1.09004 * 110.62171 * 2.91671 * 17 16 15 36 36 H 1.09002 * 110.36249 * 142.57081 * 18 17 16 37 37 H 1.08998 * 110.36354 * 264.87833 * 18 17 16 38 38 H 1.09000 * 110.44180 * 280.18989 * 20 19 18 39 39 H 1.09008 * 110.43535 * 157.79824 * 20 19 18 40 40 H 1.09003 * 110.39404 * 83.67746 * 21 13 11 41 41 H 1.09003 * 110.39400 * 321.27998 * 21 13 11 42 42 H 1.08000 * 126.12775 * 179.72687 * 22 10 9 43 43 H 1.08003 * 120.08486 * 0.26261 * 24 23 22 44 44 H 1.08005 * 119.69623 * 179.97438 * 25 24 23 45 45 H 1.08006 * 119.68605 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.09812 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3465 -0.0006 5 1 1.8887 2.3965 -1.2125 6 1 1.8888 2.3964 1.2125 7 6 2.0086 -1.2038 -0.0005 8 1 3.0643 -1.2176 -0.2276 9 7 1.3549 -2.3717 0.2866 10 6 1.5652 -3.5865 -0.3381 11 6 2.5276 -3.8325 -1.4201 12 8 3.3007 -2.9556 -1.7576 13 7 2.5544 -5.0293 -2.0391 14 6 1.7550 -6.2062 -1.6633 15 6 2.0974 -7.3342 -2.6637 16 6 2.6746 -6.5632 -3.8601 17 6 3.6296 -7.4254 -4.6878 18 6 2.9939 -7.4149 -6.0998 19 8 2.1918 -6.2091 -6.1385 20 6 1.5808 -6.1117 -4.8294 21 6 3.3911 -5.3754 -3.2064 22 6 0.7339 -4.5174 0.2054 23 6 -0.0268 -3.8794 1.2165 24 6 -1.0195 -4.3248 2.0978 25 6 -1.5869 -3.4502 2.9801 26 6 -1.1889 -2.1203 3.0119 27 6 -0.2144 -1.6581 2.1535 28 6 0.3788 -2.5302 1.2469 29 1 -0.4850 0.8368 -0.0736 30 1 0.6932 -5.9674 -1.7234 31 1 2.0096 -6.5191 -0.6507 32 1 1.1991 -7.8799 -2.9528 33 1 2.8426 -8.0098 -2.2437 34 1 4.6247 -6.9814 -4.7115 35 1 3.6725 -8.4398 -4.2911 36 1 3.7696 -7.3786 -6.8647 37 1 2.3640 -8.2935 -6.2387 38 1 0.7165 -6.7724 -4.7625 39 1 1.2890 -5.0822 -4.6213 40 1 4.3911 -5.6657 -2.8843 41 1 3.4430 -4.5353 -3.8990 42 1 0.6673 -5.5565 -0.0813 43 1 -1.3359 -5.3573 2.0798 44 1 -2.3527 -3.7960 3.6586 45 1 -1.6478 -1.4413 3.7154 46 1 0.0882 -0.6218 2.1854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610687969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:42 Heat of formation + Delta-G solvation = -1.490453 kcal Electronic energy + Delta-G solvation = -30068.032870 eV Core-core repulsion = 26116.481805 eV Total energy + Delta-G solvation = -3951.551064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.86624 -40.19564 -38.37103 -36.55685 -35.69915 -33.72332 -32.59069 -30.67218 -30.11420 -29.34133 -28.93864 -28.01472 -25.83543 -24.84191 -23.77584 -22.68843 -22.12442 -20.82785 -19.77873 -19.67088 -19.06152 -17.73476 -16.44236 -16.38797 -15.76417 -15.61936 -15.49023 -15.20590 -15.09867 -14.76473 -14.48076 -13.97990 -13.70351 -13.41128 -13.24755 -13.16869 -12.82812 -12.63217 -12.50779 -12.27868 -12.24583 -11.94223 -11.76736 -11.72232 -11.54817 -11.33468 -11.16762 -10.92502 -10.74869 -10.71999 -10.62967 -10.42026 -10.21122 -9.89987 -9.72518 -9.18522 -9.09096 -8.59708 -8.30620 -7.10881 -6.78618 -6.54726 -4.38116 1.86538 2.80524 3.04335 3.07869 3.13553 3.17010 3.22505 3.76701 3.87813 4.16049 4.21053 4.30727 4.56315 4.74215 4.75382 4.78577 4.89188 4.95325 5.13258 5.16316 5.31998 5.40924 5.44215 5.51456 5.57965 5.62245 5.70928 5.74237 5.78467 5.85712 5.91114 5.98899 6.00531 6.02798 6.15844 6.35474 6.53399 6.60654 6.63240 6.76430 6.91985 7.07337 7.14800 7.22822 7.52732 7.62190 7.72985 7.86010 8.02001 8.14763 8.46772 8.75165 8.97178 9.36090 10.26135 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003780 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.081615 B = 7405.187186 C = 9022.852449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.048 3.952 3 Si 0.934 3.066 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.120 0.880 9 N -0.230 5.230 10 C -0.022 4.022 11 C 0.604 3.396 12 O -0.532 6.532 13 N -0.620 5.620 14 C 0.098 3.902 15 C -0.120 4.120 16 C -0.108 4.108 17 C -0.138 4.138 18 C 0.044 3.956 19 O -0.376 6.376 20 C 0.061 3.939 21 C 0.130 3.870 22 C -0.221 4.221 23 C -0.125 4.125 24 C -0.095 4.095 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.043 4.043 28 C 0.085 3.915 29 H 0.281 0.719 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.139 0.861 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -14.415 -4.945 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.163 4.163 3 Si 0.758 3.242 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.137 0.863 9 N 0.110 4.890 10 C -0.139 4.139 11 C 0.396 3.604 12 O -0.408 6.408 13 N -0.356 5.356 14 C -0.025 4.025 15 C -0.158 4.158 16 C -0.109 4.109 17 C -0.176 4.176 18 C -0.033 4.033 19 O -0.295 6.295 20 C -0.016 4.016 21 C 0.008 3.992 22 C -0.248 4.248 23 C -0.130 4.130 24 C -0.114 4.114 25 C -0.174 4.174 26 C -0.178 4.178 27 C -0.062 4.062 28 C -0.030 4.030 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.156 0.844 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.638 -13.201 -5.322 14.476 hybrid contribution 0.139 0.667 0.053 0.684 sum 2.777 -12.534 -5.269 13.877 Atomic orbital electron populations 1.69980 1.06403 1.29261 1.39893 1.25722 0.95564 1.00777 0.94286 0.85741 0.80310 0.79756 0.78404 1.18392 1.19924 1.19768 1.20153 0.95554 0.81617 1.48754 0.86295 1.39945 1.24056 1.05665 1.19321 1.19464 1.04457 0.89169 1.00856 1.16905 0.82578 0.79968 0.80954 1.90775 1.41319 1.43085 1.65627 1.48128 1.43851 1.11319 1.32342 1.22463 0.96685 0.84911 0.98434 1.22648 1.01696 0.97088 0.94353 1.22067 0.96581 0.96166 0.96065 1.22763 0.99523 1.00369 0.94994 1.23535 0.94321 0.88313 0.97140 1.89285 1.64459 1.43273 1.32450 1.23289 0.94220 1.02902 0.81171 1.21937 0.93622 0.96305 0.87352 1.20917 1.02122 0.98684 1.03099 1.17979 1.00970 0.93479 1.00564 1.19990 0.97030 0.98038 0.96299 1.20259 1.02023 0.94096 1.01021 1.20532 1.00190 0.95585 1.01541 1.20162 0.95086 0.98119 0.92863 1.18150 0.96898 0.93881 0.94024 0.90864 0.90249 0.90573 0.89712 0.90086 0.90055 0.89827 0.89199 0.92258 0.91671 0.88534 0.91522 0.90145 0.84382 0.88007 0.88091 0.87816 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.09 10.60 55.50 0.59 -21.50 16 2 C 0.05 1.26 4.58 -17.47 -0.08 1.18 16 3 Si 0.93 20.12 29.58 -169.99 -5.03 15.09 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.33 -9.19 8.87 -15.01 -0.13 -9.32 16 8 H 0.12 3.38 6.81 -52.49 -0.36 3.02 16 9 N -0.23 -6.22 2.83 -56.09 -0.16 -6.37 16 10 C -0.02 -0.54 6.75 -82.25 -0.56 -1.09 16 11 C 0.60 13.60 7.80 -12.76 -0.10 13.50 16 12 O -0.53 -13.70 15.28 5.21 0.08 -13.62 16 13 N -0.62 -10.46 3.34 -172.43 -0.58 -11.03 16 14 C 0.10 1.26 4.94 -2.84 -0.01 1.24 16 15 C -0.12 -1.08 5.84 -25.58 -0.15 -1.23 16 16 C -0.11 -1.12 0.81 -154.05 -0.13 -1.25 16 17 C -0.14 -1.11 6.39 -25.76 -0.16 -1.28 16 18 C 0.04 0.38 7.68 38.13 0.29 0.67 16 19 O -0.38 -4.72 11.68 -35.23 -0.41 -5.13 16 20 C 0.06 0.71 6.72 37.14 0.25 0.96 16 21 C 0.13 1.82 5.61 -3.19 -0.02 1.81 16 22 C -0.22 -4.74 9.29 -39.02 -0.36 -5.10 16 23 C -0.13 -2.91 6.16 -106.89 -0.66 -3.57 16 24 C -0.09 -1.91 10.06 -39.52 -0.40 -2.30 16 25 C -0.15 -3.01 9.97 -39.96 -0.40 -3.41 16 26 C -0.16 -3.30 10.02 -39.50 -0.40 -3.70 16 27 C -0.04 -1.04 8.50 -39.41 -0.33 -1.38 16 28 C 0.09 2.20 6.07 -83.83 -0.51 1.70 16 29 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.08 1.06 6.71 -51.93 -0.35 0.71 16 31 H 0.08 0.95 7.08 -51.93 -0.37 0.59 16 32 H 0.08 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.08 0.62 7.91 -51.92 -0.41 0.21 16 34 H 0.08 0.65 7.68 -51.93 -0.40 0.25 16 35 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.65 7.62 -51.93 -0.40 0.25 16 39 H 0.10 1.33 7.85 -51.92 -0.41 0.92 16 40 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 41 H 0.08 1.28 7.97 -51.93 -0.41 0.86 16 42 H 0.14 2.37 4.21 -52.49 -0.22 2.15 16 43 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 44 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 45 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 46 H 0.12 2.89 6.38 -52.49 -0.33 2.56 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -32.45 362.93 -10.00 -42.45 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.11 Total: 7.22 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -3.85 Total: -12.58 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.15 Total: -38.91 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.33 Total: -18.75 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.45 -10.00 -42.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610687969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.963 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds