Wall clock time and date at job start Wed Apr 1 2020 00:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99975 * 2 1 4 4 H 1.48496 * 109.46987 * 270.00371 * 3 2 1 5 5 H 1.48500 * 109.46872 * 30.00294 * 3 2 1 6 6 H 1.48497 * 109.46798 * 150.00377 * 3 2 1 7 7 C 1.37876 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99864 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.46952 * 111.00252 * 170.00351 * 10 9 7 12 12 C 1.53049 * 109.36515 * 183.18906 * 11 10 9 13 13 N 1.46957 * 109.36568 * 301.59876 * 12 11 10 14 14 C 1.46902 * 111.00070 * 183.19042 * 13 12 11 15 15 C 1.52997 * 109.47026 * 75.75717 * 14 13 12 16 16 H 1.09003 * 109.47443 * 302.66491 * 15 14 13 17 17 O 1.42901 * 109.47509 * 62.66999 * 15 14 13 18 18 C 1.52999 * 109.46925 * 182.66697 * 15 14 13 19 19 O 1.42904 * 109.47361 * 174.99853 * 18 15 14 20 20 C 1.42899 * 114.00076 * 180.02562 * 19 18 15 21 21 C 1.50703 * 109.46896 * 180.02562 * 20 19 18 22 22 C 1.33389 * 125.20118 * 90.00253 * 21 20 19 23 23 C 1.38423 * 114.91947 * 179.97438 * 22 21 20 24 24 C 1.33393 * 114.92180 * 359.97438 * 23 22 21 25 25 S 1.75883 * 109.59181 * 359.76346 * 24 23 22 26 26 C 1.46959 * 110.88206 * 59.31831 * 13 12 11 27 27 C 1.46957 * 111.00070 * 293.80410 * 10 9 7 28 28 H 0.97000 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46853 * 60.00942 * 9 7 2 30 30 H 1.08995 * 109.47367 * 300.00282 * 9 7 2 31 31 H 1.09003 * 109.49098 * 63.21869 * 11 10 9 32 32 H 1.09001 * 109.48732 * 303.15157 * 11 10 9 33 33 H 1.09000 * 109.48860 * 181.62945 * 12 11 10 34 34 H 1.08997 * 109.49077 * 61.56391 * 12 11 10 35 35 H 1.09004 * 109.46683 * 195.75363 * 14 13 12 36 36 H 1.08992 * 109.47051 * 315.75359 * 14 13 12 37 37 H 0.96693 * 114.00093 * 59.99670 * 17 15 14 38 38 H 1.09002 * 109.47213 * 295.00079 * 18 15 14 39 39 H 1.08999 * 109.47262 * 54.99836 * 18 15 14 40 40 H 1.09007 * 109.47081 * 299.99648 * 20 19 18 41 41 H 1.08998 * 109.47557 * 59.99563 * 20 19 18 42 42 H 1.07999 * 122.54363 * 359.94976 * 22 21 20 43 43 H 1.08005 * 122.54023 * 180.02562 * 23 22 21 44 44 H 1.07998 * 125.20436 * 180.02562 * 24 23 22 45 45 H 1.08997 * 109.48229 * 60.64863 * 26 13 12 46 46 H 1.08993 * 109.48782 * 180.71667 * 26 13 12 47 47 H 1.09001 * 109.48993 * 296.78053 * 27 10 9 48 48 H 1.09002 * 109.49356 * 56.81537 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5208 -4.8940 0.2376 12 6 2.5563 -6.0187 0.3093 13 7 3.3194 -6.0592 -0.9460 14 6 4.2740 -7.1758 -0.9460 15 6 3.5242 -8.4877 -1.1856 16 1 2.7585 -8.6137 -0.4201 17 8 2.9083 -8.4559 -2.4747 18 6 4.5086 -9.6571 -1.1195 19 8 3.7926 -10.8892 -1.2269 20 6 4.6235 -12.0507 -1.1755 21 6 3.7685 -13.2857 -1.2978 22 6 3.4427 -13.8849 -2.4441 23 6 2.6454 -15.0084 -2.3089 24 6 2.3243 -15.3218 -1.0527 25 16 3.0549 -14.1623 0.0497 26 6 4.0042 -4.7809 -1.1842 27 6 2.9687 -3.6562 -1.2558 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8904 30 1 0.6246 -2.5570 0.8896 31 1 0.8252 -5.0914 -0.5781 32 1 0.9733 -4.8434 1.1787 33 1 2.0484 -6.9717 0.4570 34 1 3.2354 -5.8353 1.1419 35 1 5.0076 -7.0266 -1.7383 36 1 4.7829 -7.2187 0.0169 37 1 3.5316 -8.3459 -3.2057 38 1 5.2218 -9.5786 -1.9400 39 1 5.0429 -9.6291 -0.1698 40 1 5.3393 -12.0220 -1.9971 41 1 5.1599 -12.0721 -0.2269 42 1 3.7753 -13.5209 -3.4050 43 1 2.3095 -15.5878 -3.1562 44 1 1.7130 -16.1618 -0.7574 45 1 4.6997 -4.5835 -0.3685 46 1 4.5517 -4.8315 -2.1253 47 1 2.2896 -3.8395 -2.0885 48 1 3.4763 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:48 Heat of formation + Delta-G solvation = -44.120160 kcal Electronic energy + Delta-G solvation = -26591.335861 eV Core-core repulsion = 22773.380185 eV Total energy + Delta-G solvation = -3817.955676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.36064 -38.66667 -37.85050 -36.64345 -34.72600 -32.48899 -31.67455 -30.50327 -30.21870 -27.98096 -26.48644 -25.53833 -23.79950 -23.30026 -22.98174 -21.72462 -21.12658 -19.67687 -19.15472 -17.77372 -17.31265 -16.75083 -16.28627 -16.18537 -15.86628 -15.59430 -15.15000 -14.85303 -14.43627 -14.29611 -14.17806 -13.76618 -13.58399 -13.31230 -13.23565 -13.11845 -12.90664 -12.76490 -12.15419 -12.11492 -12.05688 -11.87220 -11.53349 -11.21087 -11.12107 -11.04475 -10.82684 -10.69607 -10.62840 -10.38190 -10.33955 -10.06771 -9.98911 -9.68801 -9.15914 -9.13280 -8.82706 -8.42194 -8.10038 -7.19352 -6.00482 -4.02006 0.54055 1.24396 1.62693 2.31380 3.26388 3.32563 3.38682 3.42720 4.03683 4.35907 4.42303 4.43822 4.63187 4.69171 4.73173 4.83857 4.88320 4.95412 4.98757 5.08859 5.12378 5.16801 5.21507 5.33621 5.35334 5.50512 5.57443 5.71675 5.74213 5.80819 5.87912 5.90528 5.92197 6.06931 6.08146 6.24504 6.48682 6.62226 6.70976 6.74421 7.19470 7.21248 7.38308 7.40913 7.68966 7.82079 8.12000 8.24043 8.58044 9.05451 9.62036 11.10368 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.001609 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.711128 B =17394.494684 C =17700.264747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.057 3.943 12 C 0.060 3.940 13 N -0.528 5.528 14 C 0.026 3.974 15 C 0.118 3.882 16 H 0.105 0.895 17 O -0.536 6.536 18 C 0.030 3.970 19 O -0.368 6.368 20 C 0.133 3.867 21 C -0.183 4.183 22 C -0.116 4.116 23 C -0.138 4.138 24 C -0.210 4.210 25 S 0.114 5.886 26 C 0.060 3.940 27 C 0.068 3.932 28 H 0.261 0.739 29 H -0.008 1.008 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.367 0.633 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.030 0.970 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.361 -30.269 -3.419 32.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.068 4.068 13 N -0.253 5.253 14 C -0.103 4.103 15 C 0.058 3.942 16 H 0.123 0.877 17 O -0.339 6.339 18 C -0.048 4.048 19 O -0.287 6.287 20 C 0.055 3.945 21 C -0.300 4.300 22 C -0.147 4.147 23 C -0.169 4.169 24 C -0.346 4.346 25 S 0.378 5.622 26 C -0.068 4.068 27 C -0.061 4.061 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.213 0.787 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.183 0.817 45 H 0.055 0.945 46 H 0.087 0.913 47 H 0.048 0.952 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.453 -30.043 -1.486 31.844 hybrid contribution 1.129 0.761 -1.747 2.215 sum 11.582 -29.282 -3.233 31.655 Atomic orbital electron populations 1.69963 1.06053 1.26732 1.50994 1.24996 0.94860 0.99287 0.95497 0.86505 0.79770 0.83171 0.77998 1.20751 1.21274 1.19849 1.21151 0.93414 0.89986 1.50039 0.91966 1.19702 0.90071 0.87270 0.96162 1.62290 1.28179 1.02785 1.33166 1.22048 0.94792 0.89859 1.00551 1.22216 0.96262 0.98700 0.89580 1.62015 1.25289 1.02689 1.35263 1.22671 0.94502 0.91988 1.01089 1.21848 0.95002 0.89806 0.87581 0.87748 1.86695 1.37074 1.95675 1.14467 1.23321 0.95417 0.85243 1.00777 1.88076 1.33437 1.12538 1.94679 1.20703 0.90715 0.82048 1.01065 1.24147 1.07679 1.01769 0.96445 1.20187 0.99652 0.96224 0.98644 1.20191 1.00737 0.98553 0.97395 1.25713 1.07468 1.04851 0.96573 1.84336 1.46997 1.20986 1.09873 1.22261 0.96125 0.88588 0.99830 1.21978 0.95469 0.97242 0.91430 0.92941 0.99009 0.95226 0.94948 0.91053 0.91202 0.94409 0.90657 0.93846 0.78665 0.92807 0.92419 0.91394 0.92295 0.84116 0.84084 0.81741 0.94474 0.91268 0.95202 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.37 8.47 -34.44 -0.29 -14.66 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 9 C 0.19 5.15 4.72 -4.98 -0.02 5.12 16 10 N -0.54 -11.94 4.70 -235.92 -1.11 -13.05 16 11 C 0.06 1.08 5.61 -3.77 -0.02 1.06 16 12 C 0.06 0.94 5.43 -3.77 -0.02 0.92 16 13 N -0.53 -7.75 4.55 -234.47 -1.07 -8.82 16 14 C 0.03 0.29 4.65 -3.82 -0.02 0.27 16 15 C 0.12 1.26 3.32 -26.73 -0.09 1.17 16 16 H 0.10 1.29 6.80 -51.93 -0.35 0.94 16 17 O -0.54 -6.68 13.22 -40.08 -0.53 -7.21 16 18 C 0.03 0.25 5.57 37.16 0.21 0.46 16 19 O -0.37 -3.89 10.29 -40.08 -0.41 -4.30 16 20 C 0.13 1.06 6.43 36.01 0.23 1.29 16 21 C -0.18 -1.61 6.14 -36.00 -0.22 -1.83 16 22 C -0.12 -0.94 10.05 -41.21 -0.41 -1.36 16 23 C -0.14 -1.01 10.18 -41.21 -0.42 -1.42 16 24 C -0.21 -1.50 11.23 29.04 0.33 -1.17 16 25 S 0.11 0.93 23.33 -107.50 -2.51 -1.57 16 26 C 0.06 0.93 5.57 -3.77 -0.02 0.91 16 27 C 0.07 1.34 5.43 -3.77 -0.02 1.32 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 36 H 0.04 0.44 8.00 -51.93 -0.42 0.03 16 37 H 0.37 3.22 9.04 45.56 0.41 3.63 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 44 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.81 6.79 -51.93 -0.35 1.45 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -33.30 400.67 -12.06 -45.37 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.30 Total: -0.46 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.89 Total: -6.45 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -1.44 Total: -48.10 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.94 Total: -11.51 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.30 -12.06 -45.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.246 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds