Wall clock time and date at job start Tue Mar 31 2020 23:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99933 * 2 1 4 4 H 1.48502 * 109.47315 * 264.72678 * 3 2 1 5 5 H 1.48496 * 109.47263 * 24.73207 * 3 2 1 6 6 H 1.48501 * 109.46960 * 144.73010 * 3 2 1 7 7 C 1.37880 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00107 * 4.98852 * 7 2 1 9 9 C 1.50703 * 119.99968 * 184.98745 * 7 2 1 10 10 H 1.09000 * 109.47189 * 25.12978 * 9 7 2 11 11 C 1.53003 * 109.46916 * 145.12539 * 9 7 2 12 12 C 1.50694 * 109.47190 * 294.99766 * 11 9 7 13 13 O 1.21278 * 120.00045 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99530 * 180.27671 * 12 11 9 15 15 C 1.46509 * 119.99504 * 179.72829 * 14 12 11 16 16 C 1.53003 * 109.46640 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.47188 * 304.99526 * 16 15 14 18 18 O 1.42897 * 109.47191 * 65.00427 * 16 15 14 19 19 C 1.50704 * 109.46879 * 184.99990 * 16 15 14 20 20 C 1.38674 * 120.41755 * 100.00006 * 19 16 15 21 21 C 1.38634 * 118.41795 * 180.02562 * 20 19 16 22 22 C 1.38221 * 119.16077 * 0.02562 * 21 20 19 23 23 N 1.31852 * 120.76573 * 359.97438 * 22 21 20 24 24 C 1.31890 * 121.72445 * 359.71193 * 23 22 21 25 25 C 1.50701 * 109.47050 * 265.12650 * 9 7 2 26 26 C 1.38225 * 120.00085 * 304.69162 * 25 9 7 27 27 C 1.38240 * 120.00085 * 179.81426 * 26 25 9 28 28 C 1.38232 * 119.99672 * 0.39136 * 27 26 25 29 29 C 1.38237 * 120.00249 * 359.85829 * 28 27 26 30 30 C 1.38236 * 119.99804 * 359.96287 * 29 28 27 31 31 H 0.96992 * 120.00227 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46651 * 175.00165 * 11 9 7 33 33 H 1.08998 * 109.47074 * 55.00458 * 11 9 7 34 34 H 0.96996 * 120.00711 * 359.72331 * 14 12 11 35 35 H 1.08992 * 109.47294 * 299.99889 * 15 14 12 36 36 H 1.08997 * 109.46817 * 60.00342 * 15 14 12 37 37 H 0.96700 * 114.00045 * 59.99264 * 18 16 15 38 38 H 1.07993 * 120.79106 * 359.97438 * 20 19 16 39 39 H 1.07995 * 120.41740 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.61800 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.61639 * 180.30492 * 24 23 22 42 42 H 1.07999 * 120.00447 * 359.97438 * 26 25 9 43 43 H 1.07998 * 120.00092 * 180.23234 * 27 26 25 44 44 H 1.07997 * 119.99805 * 179.83874 * 28 27 26 45 45 H 1.07999 * 120.00168 * 179.97438 * 29 28 27 46 46 H 1.07996 * 119.99773 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6080 1.9821 -1.3942 5 1 1.3953 2.6822 0.5857 6 1 3.4865 1.4748 0.8085 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0823 9 6 3.5072 -1.1966 0.1129 10 1 3.8352 -0.2869 0.6159 11 6 3.9556 -2.4160 0.9210 12 6 3.4492 -2.2953 2.3352 13 8 2.7939 -1.3293 2.6643 14 7 3.7290 -3.2584 3.2356 15 6 3.2418 -3.1381 4.6121 16 6 3.6944 -4.3552 5.4213 17 1 3.3653 -5.2664 4.9219 18 8 5.1197 -4.3560 5.5236 19 6 3.0918 -4.2931 6.8013 20 6 1.9686 -5.0449 7.1114 21 6 1.4484 -4.9558 8.3934 22 6 2.0619 -4.1261 9.3130 23 7 3.1290 -3.4256 8.9828 24 6 3.6546 -3.4902 7.7749 25 6 4.1149 -1.2559 -1.2649 26 6 3.7654 -2.2748 -2.1311 27 6 4.3200 -2.3270 -3.3964 28 6 5.2301 -1.3648 -3.7923 29 6 5.5835 -0.3488 -2.9241 30 6 5.0262 -0.2945 -1.6602 31 1 -0.4850 0.8400 0.0004 32 1 5.0443 -2.4668 0.9281 33 1 3.5525 -3.3211 0.4667 34 1 4.2528 -4.0311 2.9724 35 1 3.6454 -2.2313 5.0624 36 1 2.1529 -3.0887 4.6090 37 1 5.4832 -3.5726 5.9587 38 1 1.5095 -5.6838 6.3717 39 1 0.5748 -5.5274 8.6699 40 1 1.6626 -4.0508 10.3137 41 1 4.5322 -2.9052 7.5427 42 1 3.0572 -3.0286 -1.8205 43 1 4.0441 -3.1209 -4.0745 44 1 5.6653 -1.4070 -4.7798 45 1 6.2949 0.4027 -3.2333 46 1 5.3019 0.4995 -0.9821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793700523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:46 Heat of formation + Delta-G solvation = -27.476859 kcal Electronic energy + Delta-G solvation = -28361.647478 eV Core-core repulsion = 24408.969558 eV Total energy + Delta-G solvation = -3952.677920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.70834 -39.26226 -38.46498 -37.52963 -34.34961 -33.76061 -33.02066 -31.81626 -31.64603 -30.22502 -29.42703 -28.13599 -25.90511 -24.15759 -23.86313 -22.55943 -21.89753 -21.77357 -20.25621 -19.18278 -17.99780 -17.00776 -16.97332 -16.89484 -16.59541 -15.96578 -15.39969 -15.13359 -14.99818 -14.58063 -14.38982 -14.23097 -14.01699 -13.90528 -13.74680 -13.39584 -13.07454 -12.75860 -12.68661 -12.55941 -12.40559 -12.25447 -11.88478 -11.75979 -11.72652 -11.12598 -10.79780 -10.66972 -10.51023 -10.37505 -10.10905 -9.86835 -9.75416 -9.60972 -9.35890 -9.09126 -8.97842 -8.65583 -8.42723 -8.24008 -7.82753 -5.98374 -3.94936 0.72534 0.94511 2.07422 2.13245 3.36525 3.41604 3.45811 3.46758 3.46874 3.58443 4.04598 4.10669 4.42147 4.46974 4.51132 4.56112 4.56807 4.66635 4.76088 4.98790 5.19875 5.29083 5.37004 5.50466 5.54000 5.56921 5.61523 5.67245 5.76568 5.87200 5.93510 5.94775 6.02182 6.08299 6.22820 6.32074 6.32242 6.60699 6.68418 6.80444 6.82186 7.03247 7.12570 7.21631 7.25034 7.57729 7.63010 7.71938 7.82231 8.01690 8.52976 8.98708 9.01642 9.66426 11.14945 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.002590 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.562229 B =10808.665226 C =11752.375880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.087 3.913 3 Si 0.870 3.130 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.485 4.485 8 H 0.071 0.929 9 C 0.046 3.954 10 H 0.057 0.943 11 C -0.114 4.114 12 C 0.513 3.487 13 O -0.499 6.499 14 N -0.744 5.744 15 C 0.097 3.903 16 C 0.144 3.856 17 H 0.117 0.883 18 O -0.549 6.549 19 C -0.166 4.166 20 C -0.061 4.061 21 C -0.170 4.170 22 C 0.098 3.902 23 N -0.482 5.482 24 C 0.110 3.890 25 C -0.040 4.040 26 C -0.102 4.102 27 C -0.126 4.126 28 C -0.150 4.150 29 C -0.124 4.124 30 C -0.140 4.140 31 H 0.262 0.738 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.377 0.623 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.082 -11.413 10.684 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.115 4.115 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.187 1.187 7 C -0.522 4.522 8 H 0.089 0.911 9 C 0.027 3.973 10 H 0.075 0.925 11 C -0.155 4.155 12 C 0.300 3.700 13 O -0.370 6.370 14 N -0.400 5.400 15 C -0.028 4.028 16 C 0.084 3.916 17 H 0.134 0.866 18 O -0.355 6.355 19 C -0.169 4.169 20 C -0.087 4.087 21 C -0.190 4.190 22 C -0.059 4.059 23 N -0.190 5.190 24 C -0.047 4.047 25 C -0.040 4.040 26 C -0.120 4.120 27 C -0.144 4.144 28 C -0.168 4.168 29 C -0.142 4.142 30 C -0.159 4.159 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.225 0.775 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.174 0.826 41 H 0.170 0.830 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.715 -10.556 11.252 17.720 hybrid contribution -0.021 0.591 -0.533 0.796 sum 8.694 -9.965 10.719 17.023 Atomic orbital electron populations 1.69878 1.06325 1.26785 1.50657 1.24857 0.94455 0.98713 0.93513 0.86969 0.80623 0.84181 0.78363 1.20223 1.21819 1.18652 1.20590 0.87388 0.94412 1.49849 0.91124 1.18303 0.97204 0.94509 0.87289 0.92457 1.21628 0.99521 1.02402 0.91912 1.20850 0.79789 0.82100 0.87259 1.90754 1.36141 1.30745 1.79392 1.46032 1.58354 1.26005 1.09648 1.21843 1.00578 0.97055 0.83337 1.20987 0.80836 0.99626 0.90150 0.86582 1.86631 1.18854 1.47475 1.82577 1.21433 0.98065 0.99344 0.98014 1.21505 0.93991 0.96522 0.96708 1.22177 1.01614 1.00822 0.94354 1.22835 0.91419 0.91826 0.99849 1.67705 1.10985 1.20931 1.19394 1.22482 0.98548 0.95307 0.88378 1.20796 0.91511 0.92615 0.99119 1.20972 0.98814 0.99026 0.93164 1.21065 0.97901 0.98927 0.96523 1.20863 1.00320 0.96476 0.99119 1.20964 1.00472 0.98373 0.94422 1.21083 0.98473 0.99821 0.96491 0.92860 0.91289 0.89829 0.76878 0.91487 0.90685 0.77454 0.84373 0.84451 0.82619 0.82984 0.86198 0.87152 0.87390 0.87327 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 3 Si 0.87 22.81 27.15 -169.99 -4.62 18.20 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.26 -6.60 6.06 56.52 0.34 -6.26 16 7 C -0.49 -13.26 6.87 -34.44 -0.24 -13.50 16 8 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 9 C 0.05 1.05 1.21 -92.92 -0.11 0.94 16 10 H 0.06 1.41 4.70 -51.93 -0.24 1.16 16 11 C -0.11 -2.09 4.96 -27.88 -0.14 -2.23 16 12 C 0.51 9.82 7.58 -10.99 -0.08 9.74 16 13 O -0.50 -12.17 14.98 5.56 0.08 -12.09 16 14 N -0.74 -10.34 5.50 -60.29 -0.33 -10.67 16 15 C 0.10 1.20 5.29 -4.04 -0.02 1.18 16 16 C 0.14 1.31 3.26 -27.88 -0.09 1.22 16 17 H 0.12 0.96 8.03 -51.93 -0.42 0.54 16 18 O -0.55 -4.91 13.14 -35.23 -0.46 -5.37 16 19 C -0.17 -1.54 4.98 -104.48 -0.52 -2.06 16 20 C -0.06 -0.52 9.82 -39.27 -0.39 -0.90 16 21 C -0.17 -1.33 10.11 -39.44 -0.40 -1.72 16 22 C 0.10 0.86 11.18 -17.55 -0.20 0.67 16 23 N -0.48 -5.26 10.36 -13.25 -0.14 -5.40 16 24 C 0.11 1.08 10.49 -17.55 -0.18 0.89 16 25 C -0.04 -0.83 4.55 -104.63 -0.48 -1.30 16 26 C -0.10 -1.95 8.87 -39.59 -0.35 -2.31 16 27 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 28 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 29 C -0.12 -2.12 10.05 -39.58 -0.40 -2.51 16 30 C -0.14 -2.74 9.43 -39.58 -0.37 -3.11 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 34 H 0.40 4.42 8.47 -40.82 -0.35 4.08 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.38 2.37 7.52 45.56 0.34 2.72 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.15 1.15 6.79 -52.49 -0.36 0.79 16 42 H 0.12 2.27 7.80 -52.49 -0.41 1.86 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.11 2.06 7.95 -52.49 -0.42 1.64 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -36.38 387.85 -9.38 -45.77 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.68 Total: 8.93 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -4.86 Total: -17.89 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.30 Total: -43.39 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.38 Total: -17.46 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.62 Total: 18.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.38 -9.38 -45.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793700523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.291 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds