Wall clock time and date at job start Tue Mar 31 2020 23:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48507 * 109.47081 * 270.00094 * 3 2 1 5 5 H 1.48500 * 109.46986 * 29.99846 * 3 2 1 6 6 H 1.48502 * 109.47299 * 149.99972 * 3 2 1 7 7 C 1.37883 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00234 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47286 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47181 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47280 * 55.00493 * 11 10 9 13 13 N 1.46906 * 109.46907 * 295.00116 * 11 10 9 14 14 C 1.50703 * 109.47084 * 175.00286 * 11 10 9 15 15 O 1.21283 * 120.00143 * 99.99622 * 14 11 10 16 16 N 1.34775 * 119.99919 * 279.99769 * 14 11 10 17 17 C 1.46496 * 119.99813 * 180.02562 * 16 14 11 18 18 C 1.52999 * 109.47017 * 180.02562 * 17 16 14 19 19 H 1.08996 * 109.47783 * 59.99863 * 18 17 16 20 20 O 1.42907 * 109.46818 * 299.99789 * 18 17 16 21 21 C 1.53001 * 109.47516 * 179.97438 * 18 17 16 22 22 O 1.42894 * 109.47690 * 184.99437 * 21 18 17 23 23 C 1.35899 * 117.00207 * 179.97438 * 22 21 18 24 24 C 1.38768 * 120.04312 * 359.72481 * 23 22 21 25 25 C 1.38133 * 119.99235 * 179.74553 * 24 23 22 26 26 C 1.38249 * 120.08151 * 0.53683 * 25 24 23 27 27 C 1.38476 * 120.08525 * 359.73996 * 26 25 24 28 28 F 1.35097 * 119.99796 * 180.02562 * 27 26 25 29 29 C 1.38388 * 120.00482 * 359.97438 * 27 26 25 30 30 H 0.96995 * 120.00307 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46395 * 60.00749 * 9 7 2 32 32 H 1.09000 * 109.47222 * 300.00646 * 9 7 2 33 33 H 1.09004 * 109.46717 * 60.00174 * 10 9 7 34 34 H 1.09001 * 109.47166 * 300.01125 * 10 9 7 35 35 H 1.00902 * 110.99567 * 299.99674 * 13 11 10 36 36 H 1.00901 * 111.00013 * 63.95526 * 13 11 10 37 37 H 0.97001 * 120.00000 * 0.02562 * 16 14 11 38 38 H 1.09000 * 109.47205 * 299.99688 * 17 16 14 39 39 H 1.08998 * 109.47555 * 60.00145 * 17 16 14 40 40 H 0.96697 * 113.99670 * 299.99961 * 20 18 17 41 41 H 1.08998 * 109.46731 * 305.00221 * 21 18 17 42 42 H 1.09010 * 109.47119 * 64.99241 * 21 18 17 43 43 H 1.08001 * 119.99862 * 0.02562 * 24 23 22 44 44 H 1.07997 * 119.95630 * 180.27453 * 25 24 23 45 45 H 1.07998 * 119.95876 * 179.76802 * 26 25 24 46 46 H 1.07998 * 120.04010 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7885 -5.0069 -0.8432 13 7 0.7280 -5.1188 1.2538 14 6 2.4549 -6.1299 -0.1249 15 8 2.7864 -6.7536 0.8609 16 7 2.9582 -6.4586 -1.3312 17 6 3.9052 -7.5698 -1.4516 18 6 4.3190 -7.7308 -2.9157 19 1 4.7911 -6.8119 -3.2631 20 8 3.1627 -8.0022 -3.7104 21 6 5.3086 -8.8909 -3.0414 22 8 5.7840 -8.9680 -4.3868 23 6 6.6779 -9.9516 -4.6699 24 6 7.0934 -10.8213 -3.6716 25 6 7.9980 -11.8241 -3.9618 26 6 8.4990 -11.9558 -5.2436 27 6 8.0911 -11.0861 -6.2410 28 9 8.5814 -11.2167 -7.4931 29 6 7.1804 -10.0839 -5.9556 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5567 -0.8905 32 1 0.6246 -2.5571 0.8896 33 1 2.8718 -3.6044 0.8895 34 1 2.8720 -3.6043 -0.8904 35 1 1.3476 -5.1034 2.0500 36 1 0.0232 -4.4008 1.3300 37 1 2.6934 -5.9595 -2.1196 38 1 4.7874 -7.3626 -0.8458 39 1 3.4333 -8.4888 -1.1038 40 1 2.6915 -8.8076 -3.4568 41 1 6.1494 -8.7258 -2.3678 42 1 4.8101 -9.8240 -2.7783 43 1 6.7059 -10.7170 -2.6689 44 1 8.3175 -12.5034 -3.1854 45 1 9.2090 -12.7381 -5.4674 46 1 6.8616 -9.4057 -6.7332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818059102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:10 Heat of formation + Delta-G solvation = -158.978980 kcal Electronic energy + Delta-G solvation = -28000.190028 eV Core-core repulsion = 23611.040524 eV Total energy + Delta-G solvation = -4389.149504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.37171 -40.73119 -39.78750 -38.40568 -37.18355 -35.53531 -34.34674 -32.86754 -31.82681 -30.87231 -30.09293 -29.90330 -27.38416 -25.78254 -23.87611 -23.46289 -22.68180 -22.05184 -20.75098 -19.81126 -19.11721 -17.72407 -17.45582 -17.15810 -16.85664 -16.51624 -16.34165 -16.25159 -16.08435 -15.59322 -15.47432 -14.93363 -14.61004 -14.49439 -14.38966 -14.25576 -13.95547 -13.78634 -13.22755 -13.20877 -13.05963 -12.80034 -12.50079 -12.45529 -12.15620 -11.80703 -11.70387 -11.51126 -11.31728 -11.10386 -10.95096 -10.71322 -10.66556 -10.01497 -9.96446 -9.41190 -9.33326 -9.24135 -9.13044 -8.83416 -8.45544 -8.22814 -6.09977 -4.13188 0.60045 0.76303 2.30937 2.84770 3.06120 3.18997 3.26136 3.33026 3.36063 3.83337 3.87729 4.10058 4.28886 4.33863 4.36921 4.38308 4.44353 4.52446 4.66922 4.83230 4.84963 4.89761 5.01789 5.15172 5.26268 5.36621 5.41850 5.50981 5.55638 5.56692 5.67893 5.73062 5.78461 6.16825 6.25369 6.35801 6.48566 6.78171 6.84729 7.15344 7.37913 7.49476 7.58154 7.64271 7.86331 7.87724 8.29097 8.37277 8.92656 9.51793 11.00886 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.001671 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.600494 B =16755.129288 C =17885.959256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.098 0.902 13 N -0.831 5.831 14 C 0.527 3.473 15 O -0.540 6.540 16 N -0.728 5.728 17 C 0.094 3.906 18 C 0.099 3.901 19 H 0.120 0.880 20 O -0.545 6.545 21 C 0.029 3.971 22 O -0.297 6.297 23 C 0.162 3.838 24 C -0.221 4.221 25 C -0.049 4.049 26 C -0.194 4.194 27 C 0.139 3.861 28 F -0.134 7.134 29 C -0.190 4.190 30 H 0.262 0.738 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.345 0.655 36 H 0.355 0.645 37 H 0.408 0.592 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.377 0.623 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.659 -25.057 -9.357 30.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.116 0.884 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.416 6.416 16 N -0.383 5.383 17 C -0.031 4.031 18 C 0.039 3.961 19 H 0.138 0.862 20 O -0.350 6.350 21 C -0.047 4.047 22 O -0.210 6.210 23 C 0.116 3.884 24 C -0.240 4.240 25 C -0.068 4.068 26 C -0.213 4.213 27 C 0.120 3.880 28 F -0.112 7.112 29 C -0.209 4.209 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.244 0.756 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.225 0.775 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 13.616 -25.406 -9.369 30.309 hybrid contribution 0.792 1.502 0.065 1.699 sum 14.407 -23.904 -9.304 29.420 Atomic orbital electron populations 1.69943 1.06012 1.26804 1.50364 1.25013 0.94875 0.99313 0.95109 0.86580 0.79836 0.83355 0.78162 1.20594 1.21143 1.19916 1.21176 0.93012 0.90895 1.51205 0.92727 1.19109 0.93729 0.91098 0.97409 1.22383 0.99898 0.93952 1.01479 1.21467 0.94664 0.92155 0.95696 0.88420 1.58748 1.18450 1.55943 1.03169 1.20943 0.80988 0.84444 0.82200 1.90635 1.60283 1.53519 1.37150 1.45804 1.46974 1.34866 1.10656 1.21750 0.94541 0.91600 0.95211 1.22157 0.85470 0.98092 0.90354 0.86230 1.86689 1.40697 1.48438 1.59159 1.23556 0.98632 1.00230 0.82267 1.86146 1.56002 1.48649 1.30182 1.18637 0.89017 0.87853 0.92937 1.21372 1.03871 0.99084 0.99705 1.20808 0.94003 0.96153 0.95788 1.21077 1.05069 1.02075 0.93114 1.17299 0.94962 0.95965 0.79794 1.91528 1.86083 1.95246 1.38376 1.20290 1.02020 1.02051 0.96586 0.92866 0.96252 0.96381 0.92693 0.92503 0.84173 0.82961 0.75624 0.90365 0.90977 0.77481 0.90258 0.90883 0.84675 0.84554 0.84540 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.43 16 10 C -0.14 -2.63 4.78 -26.73 -0.13 -2.75 16 11 C 0.08 1.24 3.21 -68.86 -0.22 1.02 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -13.96 8.94 -5.65 -0.05 -14.01 16 14 C 0.53 8.18 7.08 -10.98 -0.08 8.11 16 15 O -0.54 -9.92 16.25 5.55 0.09 -9.83 16 16 N -0.73 -8.45 5.45 -60.30 -0.33 -8.78 16 17 C 0.09 0.82 5.34 -4.04 -0.02 0.80 16 18 C 0.10 0.71 3.33 -26.73 -0.09 0.62 16 19 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 20 O -0.54 -4.46 13.05 -40.05 -0.52 -4.98 16 21 C 0.03 0.17 4.38 37.16 0.16 0.34 16 22 O -0.30 -2.55 10.10 -24.24 -0.24 -2.79 16 23 C 0.16 1.32 6.68 -39.23 -0.26 1.05 16 24 C -0.22 -1.40 9.04 -39.42 -0.36 -1.76 16 25 C -0.05 -0.28 10.04 -39.62 -0.40 -0.67 16 26 C -0.19 -1.26 10.02 -39.49 -0.40 -1.66 16 27 C 0.14 1.14 7.30 -39.44 -0.29 0.85 16 28 F -0.13 -1.20 17.27 2.25 0.04 -1.16 16 29 C -0.19 -1.61 9.97 -39.37 -0.39 -2.00 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 36 H 0.35 6.00 7.55 -39.29 -0.30 5.71 16 37 H 0.41 4.33 8.35 -40.82 -0.34 3.99 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.38 1.90 9.05 45.56 0.41 2.31 16 41 H 0.08 0.37 7.65 -51.93 -0.40 -0.03 16 42 H 0.07 0.31 7.67 -51.92 -0.40 -0.09 16 43 H 0.14 0.60 6.30 -52.49 -0.33 0.27 16 44 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 45 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 46 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -33.50 394.89 -8.18 -41.68 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.81 Total: 11.57 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.01 Total: -8.68 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.36 Total: -47.90 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.68 Total: -17.61 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.50 -8.18 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818059102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.299 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds