Wall clock time and date at job start Tue Mar 31 2020 23:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86801 * 120.00311 * 2 1 4 4 H 1.48504 * 109.46878 * 269.99987 * 3 2 1 5 5 H 1.48498 * 109.46897 * 30.00253 * 3 2 1 6 6 H 1.48501 * 109.47085 * 150.00229 * 3 2 1 7 7 C 1.39895 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00095 * 197.92894 * 7 2 1 9 9 C 1.41219 * 119.99995 * 17.93416 * 7 2 1 10 10 C 1.40834 * 120.17564 * 24.54754 * 9 7 2 11 11 C 1.36436 * 119.80679 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18949 * 0.02562 * 11 10 9 13 13 O 1.35673 * 119.82167 * 179.97438 * 12 11 10 14 14 C 1.42894 * 117.00170 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47327 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.46591 * 55.00256 * 15 14 13 17 17 O 1.42897 * 109.47280 * 295.00330 * 15 14 13 18 18 C 1.52995 * 109.47116 * 174.99893 * 15 14 13 19 19 N 1.46900 * 109.47033 * 185.00299 * 18 15 14 20 20 C 1.48126 * 111.00101 * 184.96387 * 19 18 15 21 21 C 1.50874 * 105.66224 * 213.21719 * 20 19 18 22 22 C 1.38305 * 132.92548 * 197.34498 * 21 20 19 23 23 C 1.38314 * 118.93108 * 180.02562 * 22 21 20 24 24 N 1.31894 * 120.77388 * 359.97438 * 23 22 21 25 25 C 1.31954 * 121.85686 * 359.97438 * 24 23 22 26 26 C 1.38014 * 120.56977 * 0.02562 * 25 24 23 27 27 C 1.48105 * 111.00156 * 69.87571 * 19 18 15 28 28 C 1.39308 * 120.36067 * 0.25472 * 12 11 10 29 29 C 1.36439 * 120.18660 * 359.48440 * 28 12 11 30 30 H 0.97000 * 119.99608 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.09776 * 359.97438 * 10 9 7 32 32 H 1.08008 * 119.90868 * 179.97438 * 11 10 9 33 33 H 1.08994 * 109.47462 * 299.99771 * 14 13 12 34 34 H 1.09007 * 109.47313 * 60.00204 * 14 13 12 35 35 H 0.96698 * 113.99777 * 299.99790 * 17 15 14 36 36 H 1.08999 * 109.47657 * 304.99956 * 18 15 14 37 37 H 1.08999 * 109.47141 * 65.00460 * 18 15 14 38 38 H 1.09001 * 110.20775 * 332.26682 * 20 19 18 39 39 H 1.09001 * 110.20886 * 94.17018 * 20 19 18 40 40 H 1.08000 * 120.52913 * 359.97438 * 22 21 20 41 41 H 1.08000 * 119.61225 * 180.02562 * 23 22 21 42 42 H 1.07996 * 119.71542 * 179.97438 * 25 24 23 43 43 H 1.09006 * 110.20351 * 265.86978 * 27 19 18 44 44 H 1.08999 * 110.19865 * 27.66765 * 27 19 18 45 45 H 1.08002 * 119.90962 * 179.72475 * 28 12 11 46 46 H 1.07998 * 120.09846 * 180.26102 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4404 2.6526 0.7001 6 1 3.5405 1.4400 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0489 -1.2342 0.2885 9 6 1.3535 -2.4050 -0.3755 10 6 0.2245 -2.3584 -1.2160 11 6 -0.4025 -3.5160 -1.5742 12 6 0.0707 -4.7415 -1.1105 13 8 -0.5589 -5.8880 -1.4710 14 6 -0.0224 -7.1105 -0.9615 15 6 -0.8585 -8.2861 -1.4713 16 1 -0.9065 -8.2527 -2.5597 17 8 -2.1796 -8.1997 -0.9334 18 6 -0.2128 -9.6008 -1.0293 19 7 -0.9466 -10.7290 -1.6181 20 6 -0.4237 -12.0214 -1.1179 21 6 -0.5757 -12.9927 -2.2624 22 6 -0.5646 -14.3738 -2.3334 23 6 -0.7343 -14.9819 -3.5641 24 7 -0.9049 -14.2609 -4.6552 25 6 -0.9218 -12.9419 -4.6229 26 6 -0.7587 -12.2669 -3.4302 27 6 -0.7290 -10.7980 -3.0814 28 6 1.1834 -4.7958 -0.2741 29 6 1.8252 -3.6479 0.0893 30 1 -0.4849 0.8401 0.0004 31 1 -0.1444 -1.4092 -1.5754 32 1 -1.2688 -3.4822 -2.2184 33 1 1.0078 -7.2237 -1.2988 34 1 -0.0481 -7.0924 0.1281 35 1 -2.2132 -8.2235 0.0327 36 1 0.8240 -9.6272 -1.3646 37 1 -0.2451 -9.6740 0.0577 38 1 0.6270 -11.9222 -0.8452 39 1 -1.0062 -12.3565 -0.2597 40 1 -0.4247 -14.9679 -1.4424 41 1 -0.7279 -16.0598 -3.6322 42 1 -1.0636 -12.3857 -5.5377 43 1 -1.5262 -10.2710 -3.6059 44 1 0.2388 -10.3675 -3.3387 45 1 1.5414 -5.7495 0.0847 46 1 2.6902 -3.6920 0.7344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857874711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:58 Heat of formation + Delta-G solvation = -13.174644 kcal Electronic energy + Delta-G solvation = -27532.816270 eV Core-core repulsion = 23580.758541 eV Total energy + Delta-G solvation = -3952.057729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.31216 -39.22273 -38.41088 -37.01542 -35.95964 -33.33960 -32.95600 -32.13928 -30.44839 -29.56247 -28.99532 -28.35975 -26.59349 -24.77967 -23.64987 -22.62880 -22.13617 -21.46569 -20.68393 -20.59962 -17.52676 -17.37055 -17.00797 -16.76020 -16.64444 -16.38469 -15.69804 -15.57344 -15.19134 -14.90175 -14.54003 -14.23260 -14.08768 -13.95764 -13.74869 -13.57170 -13.43213 -12.98565 -12.67515 -12.66046 -12.30452 -12.17551 -11.96058 -11.78294 -11.77188 -11.41400 -11.16942 -11.00945 -10.83703 -10.63285 -10.15445 -10.02380 -9.96075 -9.94209 -9.83943 -9.50008 -9.35784 -9.04884 -8.78477 -7.67137 -7.06033 -6.74349 -4.27958 0.68458 0.79874 2.75638 2.92346 3.07365 3.10498 3.19378 3.20973 3.35472 3.77174 3.89487 3.93372 4.01575 4.17049 4.38434 4.54511 4.59496 4.64307 4.74584 4.85203 4.90089 4.97386 5.01747 5.08228 5.15896 5.20271 5.30090 5.36985 5.41824 5.54583 5.54743 5.64368 5.80364 5.92082 6.02117 6.19633 6.23595 6.26447 6.42085 6.70208 6.95138 7.08622 7.16193 7.43625 7.53070 7.55732 7.70420 7.76113 7.98262 8.18032 8.42309 8.62810 8.87658 8.96128 10.20113 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037011 B = 0.001616 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.345297 B =17319.127353 C =17368.507551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.118 4.118 12 C -0.010 4.010 13 O -0.316 6.316 14 C 0.038 3.962 15 C 0.118 3.882 16 H 0.105 0.895 17 O -0.539 6.539 18 C 0.015 3.985 19 N -0.489 5.489 20 C 0.072 3.928 21 C -0.060 4.060 22 C -0.153 4.153 23 C 0.098 3.902 24 N -0.482 5.482 25 C 0.119 3.881 26 C -0.151 4.151 27 C 0.075 3.925 28 C -0.168 4.168 29 C -0.199 4.199 30 H 0.280 0.720 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.371 0.629 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 -23.602 -2.665 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.153 4.153 11 C -0.137 4.137 12 C -0.053 4.053 13 O -0.232 6.232 14 C -0.040 4.040 15 C 0.058 3.942 16 H 0.123 0.877 17 O -0.343 6.343 18 C -0.114 4.114 19 N -0.212 5.212 20 C -0.056 4.056 21 C -0.068 4.068 22 C -0.173 4.173 23 C -0.059 4.059 24 N -0.190 5.190 25 C -0.037 4.037 26 C -0.154 4.154 27 C -0.053 4.053 28 C -0.187 4.187 29 C -0.218 4.218 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.218 0.782 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.154 0.846 41 H 0.177 0.823 42 H 0.175 0.825 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.562 -23.739 -4.046 24.132 hybrid contribution 1.817 0.965 1.546 2.574 sum 0.256 -22.774 -2.499 22.912 Atomic orbital electron populations 1.69834 1.07503 1.29175 1.35869 1.25883 0.94724 1.01232 0.92370 0.86321 0.80435 0.80708 0.79284 1.19310 1.20362 1.18726 1.19470 0.98110 0.91238 1.40565 0.90543 1.17606 0.91870 0.92126 0.89860 1.20988 0.98469 0.96322 0.99476 1.19849 1.00765 0.90211 1.02900 1.18613 0.96975 0.84813 1.04912 1.85885 1.54604 1.11996 1.70701 1.23101 0.97170 0.85279 0.98406 1.21795 0.83012 0.89530 0.99848 0.87746 1.86650 1.25981 1.96263 1.25359 1.23051 0.95901 0.91438 1.01019 1.65278 1.51416 1.00995 1.03513 1.21681 0.99782 0.87974 0.96131 1.20863 0.95774 0.94079 0.96120 1.21508 1.02537 0.93389 0.99887 1.22778 0.95169 1.00382 0.87570 1.67790 1.12551 1.07077 1.31591 1.22142 0.95110 0.89763 0.96733 1.21590 1.01564 0.97129 0.95070 1.21684 1.02109 0.91736 0.89744 1.20384 0.98049 0.97702 1.02569 1.20547 1.03140 0.92539 1.05624 0.90879 0.85639 0.88400 0.92585 0.92804 0.78197 0.92844 0.89324 0.91371 0.88314 0.84602 0.82300 0.82497 0.88104 0.91428 0.89009 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.58 10.96 55.55 0.61 -19.97 16 2 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.57 29.60 -169.99 -5.03 13.54 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.23 9.04 -37.83 -0.34 -12.57 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 10 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 11 C -0.12 -2.87 9.92 -39.83 -0.40 -3.26 16 12 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 13 O -0.32 -6.33 10.09 -23.57 -0.24 -6.57 16 14 C 0.04 0.55 4.36 37.16 0.16 0.71 16 15 C 0.12 1.39 3.29 -26.73 -0.09 1.30 16 16 H 0.10 1.30 7.36 -51.93 -0.38 0.92 16 17 O -0.54 -7.17 13.25 -40.08 -0.53 -7.70 16 18 C 0.01 0.13 4.27 -3.83 -0.02 0.11 16 19 N -0.49 -4.48 5.42 -235.10 -1.27 -5.76 16 20 C 0.07 0.54 6.61 -4.21 -0.03 0.51 16 21 C -0.06 -0.51 6.33 -104.34 -0.66 -1.17 16 22 C -0.15 -1.09 10.12 -39.53 -0.40 -1.49 16 23 C 0.10 0.76 11.19 -17.50 -0.20 0.57 16 24 N -0.48 -4.76 10.36 -13.25 -0.14 -4.90 16 25 C 0.12 1.08 11.19 -17.58 -0.20 0.89 16 26 C -0.15 -1.37 6.31 -104.38 -0.66 -2.03 16 27 C 0.08 0.67 5.64 -4.16 -0.02 0.64 16 28 C -0.17 -3.72 8.96 -39.83 -0.36 -4.08 16 29 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 30 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 31 H 0.13 3.34 6.16 -52.49 -0.32 3.02 16 32 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 33 H 0.06 0.76 7.66 -51.93 -0.40 0.36 16 34 H 0.05 0.74 7.63 -51.92 -0.40 0.34 16 35 H 0.37 3.72 9.05 45.56 0.41 4.13 16 36 H 0.05 0.42 7.82 -51.93 -0.41 0.01 16 37 H 0.09 0.66 8.13 -51.93 -0.42 0.23 16 38 H 0.07 0.44 7.81 -51.93 -0.41 0.04 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.10 0.93 8.11 -51.93 -0.42 0.50 16 44 H 0.07 0.55 7.61 -51.93 -0.40 0.15 16 45 H 0.09 1.72 6.27 -52.49 -0.33 1.40 16 46 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -31.49 382.27 -11.26 -42.75 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.55 Total: 8.69 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -4.87 Total: -25.85 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: -0.80 Total: -30.62 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.77 Total: -14.27 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.49 -11.26 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857874711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.579 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds