Wall clock time and date at job start Tue Mar 31 2020 22:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99871 * 2 1 4 4 H 1.48500 * 109.47156 * 270.00063 * 3 2 1 5 5 H 1.48502 * 109.47343 * 29.99718 * 3 2 1 6 6 H 1.48497 * 109.47178 * 150.00040 * 3 2 1 7 7 C 1.37872 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00375 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47514 * 179.97438 * 9 7 2 11 11 C 1.34663 * 124.64280 * 265.02394 * 10 9 7 12 12 C 1.37871 * 109.61931 * 179.97438 * 11 10 9 13 13 C 1.41719 * 126.91179 * 179.97438 * 12 11 10 14 14 O 1.21403 * 120.00289 * 180.02562 * 13 12 11 15 15 C 1.50705 * 120.00118 * 0.02733 * 13 12 11 16 16 N 1.46900 * 109.46891 * 179.97438 * 15 13 12 17 17 C 1.48361 * 110.98124 * 62.88235 * 16 15 13 18 18 C 1.51120 * 105.40228 * 92.61099 * 17 16 15 19 19 C 1.30962 * 109.46046 * 16.91263 * 18 17 16 20 20 C 1.48234 * 110.99826 * 176.42684 * 16 15 13 21 21 H 1.09002 * 110.26703 * 148.38186 * 20 16 15 22 22 C 1.52999 * 110.26434 * 26.42707 * 20 16 15 23 23 O 1.42898 * 109.47589 * 66.40839 * 22 20 16 24 24 C 1.47617 * 106.17413 * 0.26328 * 12 11 10 25 25 C 1.39190 * 133.99336 * 179.71248 * 24 12 11 26 26 C 1.37800 * 119.66963 * 180.02562 * 25 24 12 27 27 C 1.38721 * 120.27473 * 0.02562 * 26 25 24 28 28 C 1.37790 * 120.63226 * 359.51645 * 27 26 25 29 29 C 1.38016 * 124.64523 * 85.01879 * 10 9 7 30 30 H 0.97002 * 120.00119 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47575 * 59.99336 * 9 7 2 32 32 H 1.09005 * 109.47302 * 299.99509 * 9 7 2 33 33 H 1.08000 * 125.19278 * 359.97438 * 11 10 9 34 34 H 1.09002 * 109.46795 * 59.99733 * 15 13 12 35 35 H 1.08996 * 109.47186 * 300.00050 * 15 13 12 36 36 H 1.08996 * 110.29907 * 333.60066 * 17 16 15 37 37 H 1.09000 * 110.26691 * 211.60988 * 17 16 15 38 38 H 1.08004 * 125.26866 * 196.91003 * 18 17 16 39 39 H 1.08002 * 125.27221 * 180.02562 * 19 18 17 40 40 H 1.09004 * 109.47182 * 306.40528 * 22 20 16 41 41 H 1.08999 * 109.46978 * 186.40809 * 22 20 16 42 42 H 0.96699 * 114.00275 * 180.02562 * 23 22 20 43 43 H 1.08001 * 120.16505 * 0.04565 * 25 24 12 44 44 H 1.07998 * 119.86084 * 179.97438 * 26 25 24 45 45 H 1.07993 * 119.68611 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.01875 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6274 -4.2570 -1.1032 12 6 3.5166 -5.2486 -0.7472 13 6 4.1838 -6.1462 -1.6176 14 8 4.9455 -6.9766 -1.1659 15 6 3.9477 -6.0699 -3.1041 16 7 4.7496 -7.0981 -3.7806 17 6 4.3331 -8.4585 -3.3603 18 6 3.2989 -8.8926 -4.3731 19 6 3.3810 -8.1300 -5.4347 20 6 4.4783 -7.1098 -5.2379 21 1 5.3725 -7.4064 -5.7861 22 6 4.0077 -5.7294 -5.7004 23 8 5.0756 -4.7903 -5.5602 24 6 3.6285 -5.1919 0.7236 25 6 4.3485 -5.9191 1.6672 26 6 4.2292 -5.6080 3.0043 27 6 3.3959 -4.5760 3.4105 28 6 2.6850 -3.8423 2.4859 29 6 2.7878 -4.1450 1.1317 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5570 -0.8896 32 1 0.6241 -2.5567 0.8904 33 1 2.3183 -4.0314 -2.1131 34 1 4.2389 -5.0846 -3.4681 35 1 2.8911 -6.2368 -3.3132 36 1 3.8951 -8.4285 -2.3626 37 1 5.1862 -9.1368 -3.3773 38 1 2.6003 -9.7057 -4.2418 39 1 2.7603 -8.2166 -6.3143 40 1 3.1616 -5.4111 -5.0914 41 1 3.7039 -5.7806 -6.7460 42 1 4.8478 -3.8917 -5.8351 43 1 4.9977 -6.7230 1.3528 44 1 4.7861 -6.1705 3.7390 45 1 3.3099 -4.3400 4.4608 46 1 2.0388 -3.0412 2.8132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880487410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:57 Heat of formation + Delta-G solvation = 17.193858 kcal Electronic energy + Delta-G solvation = -29273.331411 eV Core-core repulsion = 25322.590560 eV Total energy + Delta-G solvation = -3950.740852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.07881 -40.35242 -38.00690 -36.65933 -36.49017 -33.63780 -32.27387 -31.79055 -30.09601 -29.72909 -29.10733 -27.69165 -26.32541 -24.67718 -23.71138 -22.67738 -21.87083 -20.51904 -20.27058 -19.48361 -18.46334 -17.46581 -16.94613 -16.68047 -16.17522 -16.04828 -15.57653 -15.35139 -15.11777 -14.75037 -14.60253 -14.06013 -13.96515 -13.69770 -13.38237 -13.30546 -13.07653 -12.91936 -12.69217 -12.46196 -12.23883 -12.02204 -11.82135 -11.80521 -11.45211 -11.41075 -11.21345 -11.18743 -10.94695 -10.91216 -10.59337 -10.27526 -10.15202 -9.80863 -9.38056 -9.03998 -8.99571 -8.81689 -8.58253 -7.76150 -7.15471 -6.42901 -4.53723 1.34713 1.91674 1.97097 2.36621 3.10385 3.18175 3.22530 3.52101 3.69050 3.71099 4.11848 4.15959 4.43699 4.46318 4.71276 4.73056 4.90762 4.96817 5.06364 5.11694 5.17145 5.25205 5.31907 5.47091 5.48572 5.53421 5.60696 5.65124 5.70965 5.71930 5.91586 5.98972 6.07333 6.15504 6.16722 6.35550 6.46417 6.49291 6.57108 6.75312 6.77279 6.90816 6.96849 7.04889 7.19040 7.33507 7.48517 7.49535 7.65831 7.76959 7.82220 8.25241 8.53842 9.15475 10.63416 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.003673 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.518202 B = 7620.808064 C = 9730.022715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.227 3.773 10 N -0.423 5.423 11 C 0.153 3.847 12 C -0.310 4.310 13 C 0.432 3.568 14 O -0.473 6.473 15 C -0.006 4.006 16 N -0.472 5.472 17 C 0.051 3.949 18 C -0.176 4.176 19 C -0.197 4.197 20 C 0.087 3.913 21 H 0.105 0.895 22 C 0.070 3.930 23 O -0.561 6.561 24 C -0.058 4.058 25 C -0.082 4.082 26 C -0.143 4.143 27 C -0.122 4.122 28 C -0.101 4.101 29 C 0.084 3.916 30 H 0.270 0.730 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.171 0.829 34 H 0.116 0.884 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.379 0.621 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 -12.016 -7.722 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.109 3.891 10 N -0.096 5.096 11 C 0.011 3.989 12 C -0.319 4.319 13 C 0.313 3.687 14 O -0.351 6.351 15 C -0.135 4.135 16 N -0.194 5.194 17 C -0.077 4.077 18 C -0.196 4.196 19 C -0.217 4.217 20 C -0.021 4.021 21 H 0.123 0.877 22 C -0.008 4.008 23 O -0.366 6.366 24 C -0.061 4.061 25 C -0.101 4.101 26 C -0.162 4.162 27 C -0.141 4.141 28 C -0.120 4.120 29 C -0.020 4.020 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.188 0.812 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.226 0.774 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.723 -12.399 -7.059 14.745 hybrid contribution -1.127 1.514 -0.641 1.993 sum 2.596 -10.884 -7.700 13.583 Atomic orbital electron populations 1.69912 1.06115 1.27959 1.48586 1.24930 0.94949 0.99610 0.94031 0.86355 0.79878 0.82010 0.78553 1.20188 1.20775 1.19464 1.21301 0.93847 0.89535 1.53794 0.91452 1.19939 0.87078 0.81969 1.00133 1.44584 1.34408 1.26801 1.03848 1.22487 0.93292 0.90825 0.92254 1.19594 1.12016 1.07251 0.93089 1.19749 0.78916 0.81273 0.88714 1.90470 1.31345 1.34251 1.79076 1.22814 0.96855 0.98752 0.95046 1.65515 1.49939 1.02250 1.01712 1.22319 0.96390 0.90481 0.98497 1.24238 0.98775 0.99794 0.96749 1.23861 0.99300 0.99025 0.99478 1.21818 0.97135 0.92574 0.90571 0.87716 1.22381 0.89838 0.89149 0.99434 1.86591 1.38792 1.21937 1.89288 1.18838 0.98630 0.96715 0.91926 1.20490 0.98707 0.99261 0.91621 1.20852 1.00827 0.99150 0.95360 1.20705 0.98223 0.96665 0.98536 1.20199 1.01637 1.00719 0.89490 1.18319 0.98443 0.96387 0.88887 0.92074 0.93019 0.93147 0.81168 0.86619 0.92070 0.89500 0.88744 0.84803 0.84874 0.92829 0.93134 0.77378 0.85795 0.86570 0.86270 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.38 13.29 55.43 0.74 -22.64 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 19.89 29.54 -169.99 -5.02 14.86 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.55 -13.73 9.39 -34.45 -0.32 -14.06 16 8 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 9 C 0.23 5.12 5.68 -5.20 -0.03 5.09 16 10 N -0.42 -8.58 2.70 -115.28 -0.31 -8.89 16 11 C 0.15 2.69 10.71 -16.44 -0.18 2.51 16 12 C -0.31 -5.66 6.11 -104.88 -0.64 -6.30 16 13 C 0.43 7.38 6.34 -32.98 -0.21 7.18 16 14 O -0.47 -9.10 14.18 5.45 0.08 -9.02 16 15 C -0.01 -0.08 3.24 -4.97 -0.02 -0.10 16 16 N -0.47 -6.53 5.38 -228.05 -1.23 -7.75 16 17 C 0.05 0.65 5.83 -3.96 -0.02 0.62 16 18 C -0.18 -1.78 10.88 -35.81 -0.39 -2.17 16 19 C -0.20 -1.86 10.18 -35.81 -0.36 -2.22 16 20 C 0.09 0.97 3.39 -67.93 -0.23 0.74 16 21 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 22 C 0.07 0.67 5.72 37.16 0.21 0.89 16 23 O -0.56 -6.11 12.51 -35.23 -0.44 -6.55 16 24 C -0.06 -1.13 6.24 -104.93 -0.65 -1.79 16 25 C -0.08 -1.48 9.80 -39.39 -0.39 -1.87 16 26 C -0.14 -2.27 10.03 -39.56 -0.40 -2.67 16 27 C -0.12 -1.97 10.01 -39.57 -0.40 -2.36 16 28 C -0.10 -1.89 9.96 -39.41 -0.39 -2.28 16 29 C 0.08 1.71 6.78 -83.95 -0.57 1.15 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.05 1.17 8.10 -51.93 -0.42 0.74 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.17 2.37 7.91 -52.49 -0.42 1.96 16 34 H 0.12 1.57 6.00 -51.93 -0.31 1.26 16 35 H 0.06 0.75 7.52 -51.93 -0.39 0.36 16 36 H 0.09 1.24 5.98 -51.93 -0.31 0.93 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.05 0.50 6.08 -51.93 -0.32 0.18 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.38 2.53 9.12 45.56 0.42 2.95 16 43 H 0.12 2.18 7.38 -52.49 -0.39 1.79 16 44 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -30.60 381.75 -11.00 -41.60 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.49 Total: 8.62 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -5.08 Total: -15.99 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.80 Total: -39.28 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.36 Total: -15.57 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.60 -11.00 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880487410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.797 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds