Wall clock time and date at job start Tue Mar 31 2020 22:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99871 * 2 1 4 4 H 1.48500 * 109.47156 * 270.00063 * 3 2 1 5 5 H 1.48502 * 109.47343 * 29.99718 * 3 2 1 6 6 H 1.48497 * 109.47178 * 150.00040 * 3 2 1 7 7 C 1.37872 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00375 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47514 * 179.97438 * 9 7 2 11 11 C 1.34663 * 124.64280 * 265.02394 * 10 9 7 12 12 C 1.37871 * 109.61931 * 179.97438 * 11 10 9 13 13 C 1.41719 * 126.91179 * 179.97438 * 12 11 10 14 14 O 1.21403 * 120.00289 * 180.02562 * 13 12 11 15 15 C 1.50705 * 120.00118 * 0.02733 * 13 12 11 16 16 N 1.46900 * 109.46891 * 179.97438 * 15 13 12 17 17 C 1.48361 * 110.98124 * 62.88235 * 16 15 13 18 18 C 1.51120 * 105.40228 * 92.61099 * 17 16 15 19 19 C 1.30962 * 109.46046 * 16.91263 * 18 17 16 20 20 C 1.48234 * 110.99826 * 176.42684 * 16 15 13 21 21 H 1.09002 * 110.26703 * 148.38186 * 20 16 15 22 22 C 1.52999 * 110.26434 * 26.42707 * 20 16 15 23 23 O 1.42898 * 109.47589 * 66.40839 * 22 20 16 24 24 C 1.47617 * 106.17413 * 0.26328 * 12 11 10 25 25 C 1.39190 * 133.99336 * 179.71248 * 24 12 11 26 26 C 1.37800 * 119.66963 * 180.02562 * 25 24 12 27 27 C 1.38721 * 120.27473 * 0.02562 * 26 25 24 28 28 C 1.37790 * 120.63226 * 359.51645 * 27 26 25 29 29 C 1.38016 * 124.64523 * 85.01879 * 10 9 7 30 30 H 0.97002 * 120.00119 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47575 * 59.99336 * 9 7 2 32 32 H 1.09005 * 109.47302 * 299.99509 * 9 7 2 33 33 H 1.08000 * 125.19278 * 359.97438 * 11 10 9 34 34 H 1.09002 * 109.46795 * 59.99733 * 15 13 12 35 35 H 1.08996 * 109.47186 * 300.00050 * 15 13 12 36 36 H 1.08996 * 110.29907 * 333.60066 * 17 16 15 37 37 H 1.09000 * 110.26691 * 211.60988 * 17 16 15 38 38 H 1.08004 * 125.26866 * 196.91003 * 18 17 16 39 39 H 1.08002 * 125.27221 * 180.02562 * 19 18 17 40 40 H 1.09004 * 109.47182 * 306.40528 * 22 20 16 41 41 H 1.08999 * 109.46978 * 186.40809 * 22 20 16 42 42 H 0.96699 * 114.00275 * 180.02562 * 23 22 20 43 43 H 1.08001 * 120.16505 * 0.04565 * 25 24 12 44 44 H 1.07998 * 119.86084 * 179.97438 * 26 25 24 45 45 H 1.07993 * 119.68611 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.01875 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6274 -4.2570 -1.1032 12 6 3.5166 -5.2486 -0.7472 13 6 4.1838 -6.1462 -1.6176 14 8 4.9455 -6.9766 -1.1659 15 6 3.9477 -6.0699 -3.1041 16 7 4.7496 -7.0981 -3.7806 17 6 4.3331 -8.4585 -3.3603 18 6 3.2989 -8.8926 -4.3731 19 6 3.3810 -8.1300 -5.4347 20 6 4.4783 -7.1098 -5.2379 21 1 5.3725 -7.4064 -5.7861 22 6 4.0077 -5.7294 -5.7004 23 8 5.0756 -4.7903 -5.5602 24 6 3.6285 -5.1919 0.7236 25 6 4.3485 -5.9191 1.6672 26 6 4.2292 -5.6080 3.0043 27 6 3.3959 -4.5760 3.4105 28 6 2.6850 -3.8423 2.4859 29 6 2.7878 -4.1450 1.1317 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5570 -0.8896 32 1 0.6241 -2.5567 0.8904 33 1 2.3183 -4.0314 -2.1131 34 1 4.2389 -5.0846 -3.4681 35 1 2.8911 -6.2368 -3.3132 36 1 3.8951 -8.4285 -2.3626 37 1 5.1862 -9.1368 -3.3773 38 1 2.6003 -9.7057 -4.2418 39 1 2.7603 -8.2166 -6.3143 40 1 3.1616 -5.4111 -5.0914 41 1 3.7039 -5.7806 -6.7460 42 1 4.8478 -3.8917 -5.8351 43 1 4.9977 -6.7230 1.3528 44 1 4.7861 -6.1705 3.7390 45 1 3.3099 -4.3400 4.4608 46 1 2.0388 -3.0412 2.8132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880487410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:56 Heat of formation + Delta-G solvation = -2.039650 kcal Electronic energy + Delta-G solvation = -29274.165439 eV Core-core repulsion = 25322.590560 eV Total energy + Delta-G solvation = -3951.574879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.48043 -41.36652 -39.28788 -38.07208 -37.27272 -35.45803 -33.62685 -33.03351 -31.22828 -30.93736 -30.40086 -29.26317 -27.62388 -25.57237 -25.34639 -24.04484 -23.21554 -21.91318 -21.41869 -20.29736 -19.74406 -18.85393 -18.37812 -17.86681 -17.45987 -17.15100 -16.69243 -16.58486 -16.44122 -16.19947 -15.95245 -15.46430 -15.23962 -14.88508 -14.77930 -14.63884 -14.26085 -14.12562 -13.90839 -13.62562 -13.58688 -13.39669 -13.11519 -13.09039 -12.82521 -12.73354 -12.53489 -12.47724 -12.33010 -12.22388 -12.07258 -11.79278 -11.59019 -10.87538 -10.76158 -10.50737 -10.47499 -10.05307 -9.54874 -9.18828 -8.65790 -8.32007 -6.53595 -0.04127 0.58077 0.95038 1.17183 1.36736 1.39809 1.49399 2.00598 2.29412 2.35524 2.76833 2.95368 3.02504 3.29558 3.48512 3.76781 3.80387 3.85201 3.86149 4.11514 4.20127 4.24151 4.24763 4.32815 4.35497 4.48128 4.58354 4.60371 4.66559 4.69796 4.72278 4.80289 4.80591 4.87813 4.90568 5.00907 5.03084 5.21367 5.37230 5.52037 5.55325 5.64776 5.66852 5.76364 5.76477 5.91429 5.92217 5.98013 6.25190 6.31869 6.59936 6.91694 6.94341 7.19122 8.69525 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.003673 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.518202 B = 7620.808064 C = 9730.022715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.030 3.970 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.053 0.947 9 C 0.243 3.757 10 N -0.437 5.437 11 C 0.157 3.843 12 C -0.320 4.320 13 C 0.431 3.569 14 O -0.500 6.500 15 C 0.008 3.992 16 N -0.499 5.499 17 C 0.050 3.950 18 C -0.185 4.185 19 C -0.181 4.181 20 C 0.081 3.919 21 H 0.098 0.902 22 C 0.070 3.930 23 O -0.586 6.586 24 C -0.083 4.083 25 C -0.097 4.097 26 C -0.132 4.132 27 C -0.111 4.111 28 C -0.124 4.124 29 C 0.057 3.943 30 H 0.273 0.727 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.205 0.795 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.395 0.605 43 H 0.123 0.877 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 -12.068 -8.641 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.172 4.172 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.595 4.595 8 H 0.071 0.929 9 C 0.124 3.876 10 N -0.112 5.112 11 C 0.017 3.983 12 C -0.329 4.329 13 C 0.314 3.686 14 O -0.380 6.380 15 C -0.121 4.121 16 N -0.221 5.221 17 C -0.078 4.078 18 C -0.204 4.204 19 C -0.200 4.200 20 C -0.027 4.027 21 H 0.115 0.885 22 C -0.008 4.008 23 O -0.394 6.394 24 C -0.086 4.086 25 C -0.115 4.115 26 C -0.151 4.151 27 C -0.130 4.130 28 C -0.144 4.144 29 C -0.047 4.047 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.221 0.779 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.171 0.829 39 H 0.181 0.819 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.245 0.755 43 H 0.141 0.859 44 H 0.171 0.829 45 H 0.172 0.828 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.724 -12.457 -7.995 15.263 hybrid contribution -1.047 1.464 -0.288 1.823 sum 2.676 -10.993 -8.283 14.021 Atomic orbital electron populations 1.69983 1.07185 1.28834 1.49262 1.25612 0.95630 1.02376 0.93605 0.85474 0.78373 0.78587 0.78849 1.19199 1.20206 1.20027 1.21439 0.93260 0.90969 1.53796 0.92922 1.19527 0.87042 0.82021 0.99007 1.44450 1.34945 1.26970 1.04814 1.22992 0.92459 0.89884 0.92959 1.19861 1.12318 1.07718 0.92982 1.20149 0.77933 0.80222 0.90269 1.90451 1.32485 1.35192 1.79896 1.22654 0.97906 0.99139 0.92373 1.65447 1.50697 1.02496 1.03494 1.22231 0.96979 0.90276 0.98313 1.24250 0.98910 1.00989 0.96237 1.24023 0.98404 0.97528 1.00041 1.21915 0.97695 0.94358 0.88762 0.88476 1.22437 0.89384 0.87953 1.00990 1.86544 1.39830 1.23358 1.89654 1.19216 0.99178 0.97121 0.93094 1.20681 0.98896 0.99394 0.92559 1.21263 1.00014 0.98625 0.95164 1.21107 0.96580 0.95510 0.99761 1.20397 1.02775 1.01551 0.89677 1.18664 0.99311 0.97174 0.89529 0.91777 0.93052 0.95124 0.77870 0.86143 0.90243 0.91703 0.89537 0.82851 0.81913 0.92372 0.90564 0.75480 0.85900 0.82886 0.82796 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.21 13.29 21.45 0.28 -47.93 16 2 C 0.03 1.50 5.46 84.65 0.46 1.96 16 3 Si 0.96 40.52 29.54 68.60 2.03 42.54 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.56 -28.32 9.39 25.60 0.24 -28.08 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.24 11.22 5.68 85.63 0.49 11.71 16 10 N -0.44 -18.09 2.70 -518.65 -1.40 -19.49 16 11 C 0.16 5.51 10.71 84.17 0.90 6.41 16 12 C -0.32 -11.81 6.11 -20.03 -0.12 -11.93 16 13 C 0.43 14.89 6.34 26.55 0.17 15.06 16 14 O -0.50 -19.77 14.18 -3.41 -0.05 -19.81 16 15 C 0.01 0.21 3.24 85.56 0.28 0.48 16 16 N -0.50 -13.54 5.38 -875.41 -4.71 -18.25 16 17 C 0.05 1.27 5.83 85.41 0.50 1.77 16 18 C -0.18 -3.42 10.88 25.82 0.28 -3.13 16 19 C -0.18 -2.92 10.18 25.82 0.26 -2.66 16 20 C 0.08 1.66 3.39 44.04 0.15 1.81 16 21 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 22 C 0.07 1.18 5.72 71.98 0.41 1.59 16 23 O -0.59 -11.81 12.51 -148.98 -1.86 -13.68 16 24 C -0.08 -3.30 6.24 -20.06 -0.13 -3.43 16 25 C -0.10 -3.48 9.80 22.39 0.22 -3.26 16 26 C -0.13 -3.98 10.03 22.28 0.22 -3.75 16 27 C -0.11 -3.41 10.01 22.28 0.22 -3.19 16 28 C -0.12 -4.71 9.96 22.38 0.22 -4.49 16 29 C 0.06 2.38 6.78 38.90 0.26 2.64 16 30 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 31 H 0.05 2.35 8.10 -2.39 -0.02 2.33 16 32 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.20 5.41 7.91 -2.91 -0.02 5.39 16 34 H 0.12 3.13 6.00 -2.39 -0.01 3.12 16 35 H 0.08 1.83 7.52 -2.39 -0.02 1.81 16 36 H 0.06 1.91 5.98 -2.39 -0.01 1.90 16 37 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.06 0.92 6.08 -2.38 -0.01 0.90 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.40 4.60 9.12 -74.06 -0.68 3.93 16 43 H 0.12 4.37 7.38 -2.91 -0.02 4.35 16 44 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 45 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 46 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -67.25 381.75 -0.34 -67.59 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.33 Total: 29.52 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 5.04 Total: -20.50 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -5.83 Total: -85.67 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.91 Total: -33.49 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Total: -67.25 -0.34 -67.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880487410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.554 kcal (2) G-P(sol) polarization free energy of solvation -67.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds