Wall clock time and date at job start Tue Mar 31 2020 23:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48498 * 109.47395 * 274.98959 * 3 2 1 5 5 H 1.48506 * 109.46908 * 34.99005 * 3 2 1 6 6 H 1.48497 * 109.47241 * 154.98664 * 3 2 1 7 7 C 1.38816 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 187.90806 * 7 2 1 9 9 N 1.36934 * 120.00092 * 7.90977 * 7 2 1 10 10 C 1.47576 * 122.02798 * 354.24525 * 9 7 2 11 11 C 1.53597 * 106.73501 * 180.10786 * 10 9 7 12 12 H 1.09003 * 109.64425 * 180.09982 * 11 10 9 13 13 C 1.53066 * 109.58715 * 59.71159 * 11 10 9 14 14 C 1.55413 * 109.48174 * 300.24039 * 13 11 10 15 15 C 1.47649 * 122.03073 * 174.22980 * 9 7 2 16 16 H 1.09004 * 110.53123 * 359.77953 * 15 9 7 17 17 C 1.53207 * 108.10650 * 238.69133 * 15 9 7 18 18 H 1.08991 * 111.66398 * 67.15814 * 17 15 9 19 19 C 1.51286 * 109.43136 * 190.70051 * 17 15 9 20 20 O 1.21222 * 125.41003 * 297.19464 * 19 17 15 21 21 N 1.33900 * 109.17840 * 117.18178 * 19 17 15 22 22 C 1.46500 * 122.76405 * 179.83289 * 21 19 17 23 23 C 1.50707 * 109.46619 * 269.95559 * 22 21 19 24 24 C 1.38232 * 119.99826 * 269.72582 * 23 22 21 25 25 C 1.38240 * 119.99746 * 179.75040 * 24 23 22 26 26 C 1.38239 * 119.99817 * 0.54687 * 25 24 23 27 27 C 1.38237 * 119.99718 * 359.70894 * 26 25 24 28 28 C 1.38228 * 120.00457 * 0.02562 * 27 26 25 29 29 C 1.33880 * 114.46892 * 359.78974 * 21 19 17 30 30 O 1.21225 * 125.40116 * 179.80658 * 29 21 19 31 31 C 1.51369 * 109.19135 * 359.79049 * 29 21 19 32 32 H 1.08996 * 111.17079 * 120.68226 * 31 29 21 33 33 H 0.96996 * 120.00029 * 359.97438 * 1 2 3 34 34 H 1.09005 * 109.45989 * 61.09973 * 10 9 7 35 35 H 1.08994 * 110.53468 * 299.70805 * 10 9 7 36 36 H 1.08996 * 109.37921 * 60.68883 * 13 11 10 37 37 H 1.08999 * 109.38042 * 180.34531 * 13 11 10 38 38 H 1.09002 * 109.86262 * 240.53057 * 14 13 11 39 39 H 1.09003 * 109.48171 * 120.33885 * 14 13 11 40 40 H 1.08999 * 109.47193 * 29.95470 * 22 21 19 41 41 H 1.08995 * 109.46935 * 149.96232 * 22 21 19 42 42 H 1.07999 * 120.00241 * 0.02562 * 24 23 22 43 43 H 1.07994 * 119.99986 * 180.27776 * 25 24 23 44 44 H 1.07998 * 119.99934 * 179.72715 * 26 25 24 45 45 H 1.08007 * 119.99584 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.00473 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0826 -1.2067 0.1281 9 7 1.3354 -2.3824 -0.1643 10 6 -0.1382 -2.4402 -0.2190 11 6 -0.5163 -3.9171 -0.4059 12 1 -1.6009 -4.0144 -0.4545 13 6 0.0218 -4.7373 0.7691 14 6 1.5685 -4.5989 0.8325 15 6 2.0378 -3.6743 -0.2971 16 1 3.1171 -3.5293 -0.2489 17 6 1.6389 -4.2974 -1.6387 18 1 2.0204 -3.7192 -2.4802 19 6 2.1255 -5.7288 -1.6933 20 8 3.2857 -6.0781 -1.6567 21 7 1.0711 -6.5485 -1.7883 22 6 1.2039 -8.0055 -1.8648 23 6 1.3135 -8.4247 -3.3083 24 6 0.1732 -8.7278 -4.0284 25 6 0.2734 -9.1074 -5.3539 26 6 1.5147 -9.1946 -5.9560 27 6 2.6554 -8.8966 -5.2342 28 6 2.5548 -8.5118 -3.9103 29 6 -0.1146 -5.9271 -1.8067 30 8 -1.1931 -6.4743 -1.8905 31 6 0.1052 -4.4328 -1.7058 32 1 -0.3090 -3.9147 -2.5707 33 1 -0.4850 0.8400 0.0004 34 1 -0.4934 -1.8543 -1.0668 35 1 -0.5704 -2.0590 0.7062 36 1 -0.4211 -4.3742 1.6965 37 1 -0.2430 -5.7854 0.6300 38 1 2.0329 -5.5782 0.7166 39 1 1.8562 -4.1727 1.7936 40 1 2.0991 -8.3175 -1.3269 41 1 0.3282 -8.4742 -1.4159 42 1 -0.7963 -8.6639 -3.5568 43 1 -0.6178 -9.3399 -5.9179 44 1 1.5933 -9.4954 -6.9902 45 1 3.6252 -8.9644 -5.7047 46 1 3.4460 -8.2793 -3.3463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887110618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:14 Heat of formation + Delta-G solvation = -18.150192 kcal Electronic energy + Delta-G solvation = -30889.614504 eV Core-core repulsion = 26937.341019 eV Total energy + Delta-G solvation = -3952.273485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.69015 -40.41450 -39.71533 -39.55438 -36.80932 -35.47927 -33.76362 -32.81141 -31.84511 -31.64479 -31.54190 -27.99313 -27.19468 -26.04249 -23.81030 -23.73545 -23.48841 -23.11354 -22.36028 -20.51936 -19.38386 -18.67623 -18.40793 -18.24972 -17.39618 -16.95643 -16.89068 -16.46703 -16.08386 -15.99710 -15.98992 -15.49138 -15.28112 -14.88665 -14.67229 -14.33412 -14.26949 -14.12922 -13.96654 -13.65523 -13.36114 -13.31811 -13.20032 -13.02661 -12.93124 -12.63551 -12.49759 -12.34093 -12.13078 -11.93590 -11.90232 -11.84836 -11.62418 -11.30436 -10.98044 -10.85451 -10.78874 -10.52847 -9.88579 -9.81566 -8.89842 -7.76713 -5.14073 0.21933 0.43616 0.45684 1.50102 1.52891 1.55177 1.60576 1.64778 2.52055 2.84393 3.01669 3.16393 3.34670 3.36037 3.61365 3.67129 3.75581 3.80838 3.92334 4.06548 4.08518 4.13831 4.19823 4.24825 4.34454 4.35139 4.39888 4.47645 4.53171 4.59341 4.67628 4.72492 4.80581 4.89053 5.00616 5.03167 5.09823 5.13667 5.22217 5.30728 5.50138 5.53809 5.55818 5.59767 5.69190 5.77417 5.87722 6.03672 6.22017 6.28508 6.72985 7.18101 7.84479 8.34691 9.27201 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.003349 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.600092 B = 8358.415785 C = 8708.085406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.290 1.290 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.608 5.608 10 C 0.216 3.784 11 C -0.091 4.091 12 H 0.090 0.910 13 C -0.104 4.104 14 C -0.130 4.130 15 C 0.189 3.811 16 H 0.077 0.923 17 C -0.129 4.129 18 H 0.122 0.878 19 C 0.549 3.451 20 O -0.500 6.500 21 N -0.562 5.562 22 C 0.136 3.864 23 C -0.127 4.127 24 C -0.110 4.110 25 C -0.130 4.130 26 C -0.114 4.114 27 C -0.130 4.130 28 C -0.110 4.110 29 C 0.548 3.452 30 O -0.499 6.499 31 C -0.103 4.103 32 H 0.127 0.873 33 H 0.246 0.754 34 H 0.028 0.972 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 -18.576 -7.812 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.217 1.217 5 H -0.226 1.226 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.331 5.331 10 C 0.091 3.909 11 C -0.111 4.111 12 H 0.108 0.892 13 C -0.142 4.142 14 C -0.169 4.169 15 C 0.081 3.919 16 H 0.095 0.905 17 C -0.152 4.152 18 H 0.140 0.860 19 C 0.339 3.661 20 O -0.373 6.373 21 N -0.304 5.304 22 C 0.016 3.984 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.148 4.148 28 C -0.129 4.129 29 C 0.338 3.662 30 O -0.372 6.372 31 C -0.124 4.124 32 H 0.144 0.856 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.160 0.840 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.217 -18.908 -7.783 20.484 hybrid contribution 0.244 1.268 0.132 1.298 sum 1.461 -17.640 -7.651 19.283 Atomic orbital electron populations 1.70205 1.05917 1.25023 1.58008 1.25484 0.96410 1.00402 1.02453 0.85235 0.77947 0.80133 0.77056 1.21713 1.22620 1.19631 1.19600 0.91984 0.84269 1.41729 0.90187 1.44771 1.02210 1.01529 1.84581 1.20791 0.82308 0.88765 0.98991 1.21610 1.00218 0.97230 0.91992 0.89172 1.21874 0.95327 0.98548 0.98440 1.22519 0.95836 0.98623 0.99942 1.20457 0.96224 0.85507 0.89725 0.90521 1.22753 0.95376 0.93065 1.04044 0.86001 1.20745 0.84351 0.88833 0.72148 1.90692 1.17867 1.81717 1.46977 1.46794 1.09062 1.09265 1.65262 1.20778 1.05758 0.77446 0.94379 1.20063 0.94247 1.02473 0.95979 1.21289 0.97998 0.98326 0.95203 1.21466 0.98905 0.99758 0.94640 1.21561 0.92165 0.98448 1.01012 1.21462 0.99983 0.99365 0.93987 1.21291 0.97000 0.98584 0.96008 1.20791 0.82753 0.90500 0.72154 1.90691 1.26565 1.73227 1.46716 1.22036 0.96046 0.91977 1.02369 0.85565 0.94417 0.95339 0.95679 0.91363 0.92072 0.91815 0.91803 0.87354 0.87311 0.85863 0.83970 0.83420 0.84025 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.79 9.82 21.65 0.21 -52.58 16 2 C -0.05 -2.87 5.46 84.86 0.46 -2.41 16 3 Si 0.97 43.79 29.56 68.60 2.03 45.82 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.25 -12.72 9.97 84.03 0.84 -11.88 16 8 H 0.08 4.00 7.81 -2.91 -0.02 3.98 16 9 N -0.61 -27.87 2.88 -670.40 -1.93 -29.81 16 10 C 0.22 9.67 4.39 86.37 0.38 10.05 16 11 C -0.09 -3.14 2.86 -10.56 -0.03 -3.17 16 12 H 0.09 2.95 8.14 -2.39 -0.02 2.94 16 13 C -0.10 -3.30 5.45 31.45 0.17 -3.13 16 14 C -0.13 -4.28 5.62 31.54 0.18 -4.10 16 15 C 0.19 7.04 3.20 44.96 0.14 7.19 16 16 H 0.08 2.93 8.00 -2.38 -0.02 2.91 16 17 C -0.13 -4.19 3.40 -10.91 -0.04 -4.23 16 18 H 0.12 3.97 8.14 -2.39 -0.02 3.96 16 19 C 0.55 16.47 5.61 87.98 0.49 16.96 16 20 O -0.50 -16.43 17.48 -2.85 -0.05 -16.48 16 21 N -0.56 -15.14 2.54 -760.66 -1.93 -17.07 16 22 C 0.14 3.08 5.68 85.64 0.49 3.57 16 23 C -0.13 -2.88 5.46 -19.86 -0.11 -2.99 16 24 C -0.11 -2.38 9.70 22.27 0.22 -2.16 16 25 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 26 C -0.11 -1.89 10.05 22.27 0.22 -1.66 16 27 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 28 C -0.11 -2.42 9.70 22.27 0.22 -2.20 16 29 C 0.55 16.02 5.70 88.01 0.50 16.52 16 30 O -0.50 -15.89 17.48 -2.86 -0.05 -15.94 16 31 C -0.10 -3.23 3.20 -10.94 -0.04 -3.27 16 32 H 0.13 3.82 8.14 -2.39 -0.02 3.80 16 33 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 34 H 0.03 1.44 7.14 -2.38 -0.02 1.42 16 35 H 0.03 1.29 7.34 -2.39 -0.02 1.27 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 1.75 6.99 -2.39 -0.02 1.74 16 38 H 0.06 1.90 6.91 -2.39 -0.02 1.88 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.11 2.26 7.77 -2.39 -0.02 2.24 16 41 H 0.11 2.24 7.77 -2.39 -0.02 2.23 16 42 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -61.26 365.67 3.81 -57.45 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.99 Total: 19.83 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 4.55 Total: 8.78 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -3.65 Total: -99.46 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.10 Total: -32.42 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -61.26 3.81 -57.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887110618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.301 kcal (2) G-P(sol) polarization free energy of solvation -61.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds