Wall clock time and date at job start Tue Mar 31 2020 23:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86805 * 120.00523 * 2 1 4 4 H 1.48503 * 109.46787 * 89.99622 * 3 2 1 5 5 H 1.48491 * 109.47326 * 210.00031 * 3 2 1 6 6 H 1.48495 * 109.46686 * 330.00551 * 3 2 1 7 7 C 1.38659 * 119.99996 * 179.73002 * 2 1 3 8 8 H 1.08004 * 119.99590 * 359.97438 * 7 2 1 9 9 O 1.34806 * 120.00277 * 180.02562 * 7 2 1 10 10 C 1.35715 * 116.99931 * 174.94077 * 9 7 2 11 11 C 1.39416 * 120.38935 * 5.48204 * 10 9 7 12 12 C 1.38217 * 118.45930 * 179.97438 * 11 10 9 13 13 C 1.39434 * 119.14593 * 0.02562 * 12 11 10 14 14 C 1.48289 * 119.65328 * 179.97438 * 13 12 11 15 15 C 1.39397 * 120.12363 * 359.73235 * 14 13 12 16 16 C 1.38000 * 119.86818 * 179.71849 * 15 14 13 17 17 C 1.38338 * 120.12594 * 0.55353 * 16 15 14 18 18 C 1.50705 * 119.87087 * 179.74637 * 17 16 15 19 19 N 1.46897 * 109.46861 * 269.97199 * 18 17 16 20 20 C 1.47014 * 111.00195 * 293.64001 * 19 18 17 21 21 C 1.53101 * 109.26089 * 177.60899 * 20 19 18 22 22 O 1.43014 * 109.25942 * 56.84256 * 21 20 19 23 23 C 1.43017 * 113.73784 * 301.33488 * 22 21 20 24 24 C 1.47009 * 110.99984 * 169.99954 * 19 18 17 25 25 C 1.38333 * 120.25639 * 359.71449 * 17 16 15 26 26 C 1.38000 * 120.12373 * 0.02562 * 25 17 16 27 27 N 1.32685 * 120.69246 * 0.02562 * 13 12 11 28 28 C 1.31660 * 121.68893 * 359.65237 * 27 13 12 29 29 H 0.96996 * 119.99569 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.76942 * 0.02562 * 11 10 9 31 31 H 1.08001 * 120.43327 * 180.02562 * 12 11 10 32 32 H 1.08000 * 120.06607 * 359.96873 * 15 14 13 33 33 H 1.07998 * 119.93637 * 180.27023 * 16 15 14 34 34 H 1.09000 * 109.46940 * 29.97291 * 18 17 16 35 35 H 1.08999 * 109.46879 * 149.97527 * 18 17 16 36 36 H 1.09007 * 109.50124 * 297.54052 * 20 19 18 37 37 H 1.08997 * 109.50913 * 57.66763 * 20 19 18 38 38 H 1.08995 * 109.50148 * 296.91177 * 21 20 19 39 39 H 1.08994 * 109.54370 * 176.79951 * 21 20 19 40 40 H 1.08996 * 109.50360 * 298.73193 * 23 22 21 41 41 H 1.09004 * 109.53989 * 178.62489 * 23 22 21 42 42 H 1.09000 * 109.51191 * 302.32746 * 24 19 18 43 43 H 1.08998 * 109.50592 * 62.41774 * 24 19 18 44 44 H 1.07997 * 119.93714 * 180.02562 * 25 17 16 45 45 H 1.08007 * 120.06311 * 180.02562 * 26 25 17 46 46 H 1.08001 * 119.60669 * 180.33138 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0463 1.4001 5 1 3.5472 1.4401 -0.7000 6 1 1.4471 2.6526 -0.6999 7 6 2.0088 -1.2008 0.0057 8 1 1.4687 -2.1361 0.0105 9 8 3.3569 -1.2009 0.0062 10 6 3.9729 -2.4049 0.1185 11 6 3.2264 -3.5824 0.1124 12 6 3.8947 -4.7866 0.2286 13 6 5.2840 -4.7835 0.3478 14 6 6.0124 -6.0690 0.4738 15 6 5.3104 -7.2733 0.4785 16 6 5.9941 -8.4669 0.5901 17 6 7.3724 -8.4691 0.7087 18 6 8.1127 -9.7756 0.8360 19 7 8.2353 -10.1325 2.2557 20 6 9.0986 -9.1781 2.9663 21 6 9.1506 -9.5519 4.4501 22 8 9.6106 -10.8997 4.5811 23 6 8.7925 -11.8559 3.9016 24 6 8.7370 -11.5054 2.4123 25 6 8.0737 -7.2767 0.7103 26 6 7.4011 -6.0774 0.5939 27 7 5.9609 -3.6424 0.3508 28 6 5.3556 -2.4788 0.2357 29 1 -0.4849 0.8400 -0.0004 30 1 2.1508 -3.5542 0.0181 31 1 3.3481 -5.7181 0.2271 32 1 4.2340 -7.2725 0.3908 33 1 5.4517 -9.4008 0.5895 34 1 7.5634 -10.5570 0.3110 35 1 9.1064 -9.6740 0.3998 36 1 10.1039 -9.2143 2.5464 37 1 8.6945 -8.1715 2.8585 38 1 8.1540 -9.4638 4.8826 39 1 9.8342 -8.8818 4.9712 40 1 7.7856 -11.8348 4.3183 41 1 9.2169 -12.8523 4.0255 42 1 8.0688 -12.1978 1.9002 43 1 9.7361 -11.5790 1.9830 44 1 9.1497 -7.2845 0.8027 45 1 7.9497 -5.1470 0.5948 46 1 5.9403 -1.5708 0.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904798988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:17 Heat of formation + Delta-G solvation = -19.772917 kcal Electronic energy + Delta-G solvation = -27735.473905 eV Core-core repulsion = 23783.130054 eV Total energy + Delta-G solvation = -3952.343852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.56119 -40.79555 -39.93439 -38.92331 -36.77208 -34.59986 -33.57683 -33.15552 -32.16695 -31.69651 -30.77665 -28.67125 -27.31515 -25.42572 -25.14120 -24.82790 -23.46737 -22.97489 -21.73370 -21.29514 -19.98500 -19.32670 -18.01330 -17.56560 -17.37593 -17.15541 -16.62891 -16.36463 -16.18833 -16.05426 -15.96099 -15.63230 -15.32422 -15.25867 -15.04600 -14.79015 -14.55262 -14.48963 -14.45233 -14.09864 -13.89550 -13.43656 -13.19482 -13.05362 -12.93229 -12.76294 -12.44058 -12.33145 -12.14563 -11.97144 -11.81232 -11.73638 -11.51759 -11.06281 -10.68924 -10.66886 -10.50270 -10.17766 -9.79036 -9.38131 -8.80157 -8.57141 -6.29197 -0.26771 0.30093 0.55922 0.86727 1.32382 1.36057 1.51752 2.24370 2.53306 2.78452 2.83600 2.93137 3.05181 3.27028 3.36838 3.68140 3.81351 3.93197 3.97471 3.99171 4.06092 4.12064 4.19418 4.21541 4.26363 4.33420 4.38231 4.46922 4.56523 4.63775 4.68010 4.75116 4.79721 4.81720 4.83936 4.92069 4.97781 5.02969 5.10512 5.22577 5.24278 5.39809 5.51682 5.66749 5.69593 5.74225 5.93501 5.94561 5.97823 6.11341 6.18971 6.75221 6.99267 7.42156 8.53173 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.001824 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.535278 B =15347.667006 C =15506.980304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.267 1.267 7 C -0.405 4.405 8 H 0.087 0.913 9 O -0.224 6.224 10 C 0.083 3.917 11 C -0.191 4.191 12 C -0.104 4.104 13 C 0.070 3.930 14 C -0.040 4.040 15 C -0.116 4.116 16 C -0.096 4.096 17 C -0.081 4.081 18 C 0.100 3.900 19 N -0.541 5.541 20 C 0.017 3.983 21 C 0.062 3.938 22 O -0.406 6.406 23 C 0.059 3.941 24 C 0.019 3.981 25 C -0.114 4.114 26 C -0.104 4.104 27 N -0.443 5.443 28 C 0.039 3.961 29 H 0.288 0.712 30 H 0.133 0.867 31 H 0.159 0.841 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.042 0.958 44 H 0.134 0.866 45 H 0.122 0.878 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.870 -23.419 3.842 29.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.184 4.184 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.183 1.183 6 H -0.192 1.192 7 C -0.481 4.481 8 H 0.104 0.896 9 O -0.129 6.129 10 C 0.030 3.970 11 C -0.217 4.217 12 C -0.123 4.123 13 C -0.066 4.066 14 C -0.041 4.041 15 C -0.135 4.135 16 C -0.115 4.115 17 C -0.082 4.082 18 C -0.027 4.027 19 N -0.266 5.266 20 C -0.111 4.111 21 C -0.015 4.015 22 O -0.325 6.325 23 C -0.018 4.018 24 C -0.109 4.109 25 C -0.133 4.133 26 C -0.123 4.123 27 N -0.152 5.152 28 C -0.123 4.123 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.177 0.823 32 H 0.154 0.846 33 H 0.163 0.837 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.076 0.924 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.060 0.940 44 H 0.152 0.848 45 H 0.140 0.860 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 18.336 -23.120 4.214 29.808 hybrid contribution -0.877 1.186 -0.665 1.618 sum 17.458 -21.934 3.549 28.258 Atomic orbital electron populations 1.69709 1.06909 1.29958 1.48533 1.25282 0.95869 1.02230 0.95024 0.85244 0.78996 0.77303 0.79433 1.19004 1.18333 1.19181 1.20738 0.77657 0.96443 1.53247 0.89577 1.83515 1.21662 1.26422 1.81273 1.20711 0.94186 0.86077 0.96037 1.21721 1.01396 0.92363 1.06201 1.22078 0.94367 0.98395 0.97490 1.19822 0.90517 0.91879 1.04383 1.18537 0.93622 0.90188 1.01728 1.21381 1.00660 0.91281 1.00187 1.21089 0.93690 0.97907 0.98785 1.19919 0.94050 0.94629 0.99577 1.21048 0.98960 0.94358 0.88324 1.62213 1.50059 1.02563 1.11795 1.22829 0.95429 0.97683 0.95203 1.22725 1.00485 0.83311 0.94934 1.87956 1.53346 1.16953 1.74284 1.22832 0.95621 0.92931 0.90392 1.22844 0.99737 0.90171 0.98101 1.21113 1.00263 0.91400 1.00495 1.21257 0.93273 0.98803 0.98918 1.67482 1.39472 0.97542 1.10713 1.22073 0.88722 0.96652 1.04814 0.90265 0.84897 0.82311 0.84626 0.83669 0.88105 0.93227 0.93954 0.89602 0.92718 0.87433 0.92392 0.86656 0.87750 0.93971 0.84789 0.85954 0.81208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.14 13.96 21.61 0.30 -51.84 16 2 C 0.02 0.90 5.49 84.84 0.47 1.36 16 3 Si 0.97 43.31 28.62 68.60 1.96 45.27 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.40 -22.63 9.95 67.92 0.68 -21.95 16 8 H 0.09 4.99 5.48 -2.91 -0.02 4.97 16 9 O -0.22 -11.54 8.59 -22.11 -0.19 -11.73 16 10 C 0.08 3.75 6.67 22.73 0.15 3.90 16 11 C -0.19 -7.99 9.25 22.55 0.21 -7.78 16 12 C -0.10 -3.60 9.45 22.55 0.21 -3.39 16 13 C 0.07 2.43 6.73 41.98 0.28 2.71 16 14 C -0.04 -1.14 5.88 -20.05 -0.12 -1.26 16 15 C -0.12 -2.70 9.42 22.49 0.21 -2.49 16 16 C -0.10 -1.82 9.68 22.24 0.22 -1.60 16 17 C -0.08 -1.45 4.90 -19.82 -0.10 -1.55 16 18 C 0.10 1.33 5.11 85.56 0.44 1.76 16 19 N -0.54 -7.80 4.72 -899.78 -4.24 -12.04 16 20 C 0.02 0.26 5.27 86.32 0.45 0.71 16 21 C 0.06 0.96 7.01 72.02 0.50 1.47 16 22 O -0.41 -7.08 10.83 -148.98 -1.61 -8.69 16 23 C 0.06 0.71 7.01 72.02 0.50 1.21 16 24 C 0.02 0.21 5.64 86.32 0.49 0.70 16 25 C -0.11 -2.31 7.91 22.24 0.18 -2.13 16 26 C -0.10 -2.71 9.57 22.49 0.22 -2.49 16 27 N -0.44 -16.65 9.42 -184.31 -1.74 -18.39 16 28 C 0.04 1.54 11.14 84.89 0.95 2.48 16 29 H 0.29 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.13 5.85 5.75 -2.91 -0.02 5.83 16 31 H 0.16 4.31 6.18 -2.91 -0.02 4.29 16 32 H 0.14 2.76 6.18 -2.91 -0.02 2.74 16 33 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.10 1.03 7.98 -2.39 -0.02 1.01 16 35 H 0.05 0.62 8.06 -2.39 -0.02 0.60 16 36 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.09 1.45 6.01 -2.39 -0.01 1.44 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.12 0.91 8.14 -2.38 -0.02 0.90 16 42 H 0.10 0.78 8.09 -2.39 -0.02 0.76 16 43 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.13 2.17 8.00 -2.91 -0.02 2.15 16 45 H 0.12 3.37 7.53 -2.91 -0.02 3.35 16 46 H 0.17 6.00 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -64.91 376.08 1.42 -63.49 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.00 Total: 22.25 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 5.94 Total: -28.33 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -5.68 Total: -82.27 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -1.80 Total: -20.41 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.96 Total: 45.27 kcal Total: -64.91 1.42 -63.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904798988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.719 kcal (2) G-P(sol) polarization free energy of solvation -64.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds