Wall clock time and date at job start Tue Mar 31 2020 22:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86808 * 119.99849 * 2 1 4 4 H 1.48490 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46889 * 300.00036 * 3 2 1 6 6 H 1.48505 * 109.46847 * 59.99940 * 3 2 1 7 7 C 1.38811 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99668 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.65153 * 180.02562 * 9 7 2 11 11 C 1.54329 * 107.27148 * 178.97799 * 10 9 7 12 12 H 1.08994 * 110.72263 * 96.34642 * 11 10 9 13 13 C 1.53003 * 110.71620 * 219.44401 * 11 10 9 14 14 N 1.46499 * 109.46708 * 291.15035 * 13 11 10 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 11 16 16 O 1.21561 * 119.99531 * 359.97438 * 15 14 13 17 17 C 1.47778 * 119.99985 * 179.72959 * 15 14 13 18 18 C 1.40651 * 119.74616 * 359.97438 * 17 15 14 19 19 C 1.35725 * 120.84580 * 179.97438 * 18 17 15 20 20 C 1.40700 * 120.02035 * 0.02997 * 19 18 17 21 21 C 1.40482 * 121.04637 * 180.02562 * 20 19 18 22 22 C 1.36139 * 119.72074 * 179.97438 * 21 20 19 23 23 C 1.39363 * 121.01009 * 359.94981 * 22 21 20 24 24 C 1.36085 * 120.95653 * 0.04859 * 23 22 21 25 25 C 1.40657 * 119.66133 * 359.97438 * 24 23 22 26 26 C 1.38482 * 119.74408 * 179.72712 * 17 15 14 27 27 C 1.55163 * 103.09791 * 337.89035 * 11 10 9 28 28 H 1.09000 * 111.00416 * 277.34091 * 27 11 10 29 29 O 1.42900 * 110.99811 * 153.49264 * 27 11 10 30 30 C 1.47430 * 125.64414 * 0.04052 * 9 7 2 31 31 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 32 32 H 1.08990 * 109.88452 * 59.55639 * 10 9 7 33 33 H 1.09000 * 109.88050 * 298.38863 * 10 9 7 34 34 H 1.08998 * 109.46692 * 171.15537 * 13 11 10 35 35 H 1.08994 * 109.47584 * 51.15401 * 13 11 10 36 36 H 0.97005 * 120.00261 * 0.02562 * 14 13 11 37 37 H 1.07997 * 119.57804 * 359.97438 * 18 17 15 38 38 H 1.07998 * 119.99141 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.13917 * 359.94985 * 21 20 19 40 40 H 1.08003 * 119.49546 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.51824 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.17141 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.27768 * 0.02562 * 26 17 15 44 44 H 0.96707 * 113.99903 * 179.97438 * 29 27 11 45 45 H 1.09001 * 110.36775 * 322.92793 * 30 9 7 46 46 H 1.08995 * 110.36598 * 85.14774 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 1.9320 -3.7274 -0.0017 11 6 0.7786 -4.7525 0.0232 12 1 0.5495 -5.0999 -0.9842 13 6 1.1222 -5.9318 0.9354 14 7 2.2006 -6.7182 0.3314 15 6 2.6707 -7.8130 0.9615 16 8 2.2001 -8.1476 2.0312 17 6 3.7545 -8.6096 0.3494 18 6 4.2912 -8.2208 -0.8912 19 6 5.2872 -8.9357 -1.4734 20 6 5.7959 -10.0823 -0.8361 21 6 6.8269 -10.8379 -1.4189 22 6 7.2992 -11.9425 -0.7783 23 6 6.7761 -12.3379 0.4514 24 6 5.7771 -11.6314 1.0469 25 6 5.2631 -10.4847 0.4150 26 6 4.2373 -9.7303 1.0041 27 6 -0.4054 -3.9355 0.6048 28 1 -0.3601 -3.9027 1.6933 29 8 -1.6577 -4.4625 0.1620 30 6 -0.1414 -2.5332 -0.0031 31 1 -0.4851 0.8400 -0.0004 32 1 2.5573 -3.8514 0.8823 33 1 2.5295 -3.8637 -0.9031 34 1 0.2414 -6.5610 1.0630 35 1 1.4454 -5.5577 1.9068 36 1 2.5764 -6.4509 -0.5221 37 1 3.9057 -7.3421 -1.3869 38 1 5.6894 -8.6244 -2.4261 39 1 7.2428 -10.5440 -2.3713 40 1 8.0916 -12.5209 -1.2299 41 1 7.1691 -13.2180 0.9386 42 1 5.3808 -11.9495 1.9999 43 1 3.8249 -10.0234 1.9583 44 1 -2.4273 -3.9845 0.5002 45 1 -0.5998 -1.7594 0.6127 46 1 -0.5264 -2.4842 -1.0216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958612782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:45 Heat of formation + Delta-G solvation = -36.864235 kcal Electronic energy + Delta-G solvation = -28091.895314 eV Core-core repulsion = 24138.810328 eV Total energy + Delta-G solvation = -3953.084987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.63287 -40.60354 -39.71168 -37.17415 -36.67338 -36.19873 -34.08940 -33.69476 -32.04813 -30.94298 -30.19576 -29.26737 -27.37623 -25.81914 -24.36547 -24.13861 -22.86874 -22.42497 -21.70702 -21.26259 -19.29408 -18.83572 -18.37051 -18.20540 -17.60457 -17.05379 -16.88549 -16.49410 -16.18032 -15.71997 -15.66333 -15.57392 -14.96851 -14.77187 -14.64334 -14.57917 -14.31848 -14.26377 -14.05893 -14.00965 -13.66930 -13.28181 -13.11483 -12.91756 -12.79328 -12.42550 -12.32632 -12.22999 -12.18995 -11.91599 -11.85481 -11.78410 -11.44134 -11.11828 -10.98851 -10.81462 -10.74935 -10.23164 -9.62799 -8.93561 -8.89235 -7.80769 -5.26025 -0.63489 -0.15630 0.97518 1.47302 1.47609 1.51326 1.58079 2.03274 2.31815 2.46779 3.14005 3.18432 3.29969 3.53373 3.61621 3.63280 3.74566 3.85184 3.89978 4.00702 4.08853 4.11511 4.20270 4.32145 4.40715 4.41991 4.43640 4.50278 4.58862 4.72182 4.82380 4.86497 4.92301 4.94830 5.09363 5.15130 5.21568 5.24356 5.29675 5.35045 5.42036 5.47661 5.57155 5.59258 5.72965 5.79727 6.02092 6.23851 6.43416 6.87569 7.06670 7.08990 7.72736 8.35352 9.21342 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.002160 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.173449 B =12962.625867 C =14071.456503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.085 0.915 9 N -0.623 5.623 10 C 0.139 3.861 11 C -0.088 4.088 12 H 0.094 0.906 13 C 0.146 3.854 14 N -0.709 5.709 15 C 0.555 3.445 16 O -0.581 6.581 17 C -0.148 4.148 18 C -0.100 4.100 19 C -0.105 4.105 20 C -0.051 4.051 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.119 4.119 24 C -0.113 4.113 25 C -0.081 4.081 26 C -0.046 4.046 27 C 0.096 3.904 28 H 0.067 0.933 29 O -0.568 6.568 30 C 0.134 3.866 31 H 0.248 0.752 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.413 0.587 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.133 0.867 44 H 0.394 0.606 45 H 0.079 0.921 46 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.476 -24.402 -3.040 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.103 0.897 9 N -0.351 5.351 10 C 0.014 3.986 11 C -0.107 4.107 12 H 0.112 0.888 13 C 0.022 3.978 14 N -0.361 5.361 15 C 0.344 3.656 16 O -0.463 6.463 17 C -0.151 4.151 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.051 4.051 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.131 4.131 25 C -0.081 4.081 26 C -0.066 4.066 27 C 0.035 3.965 28 H 0.085 0.915 29 O -0.375 6.375 30 C 0.008 3.992 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.250 0.750 37 H 0.162 0.838 38 H 0.179 0.821 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.244 0.756 45 H 0.097 0.903 46 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 12.489 -24.820 -2.605 27.907 hybrid contribution -0.324 1.861 0.049 1.889 sum 12.165 -22.960 -2.556 26.109 Atomic orbital electron populations 1.70006 1.06209 1.25089 1.58589 1.25648 0.96683 1.01063 1.02614 0.84965 0.78153 0.79244 0.76693 1.19015 1.21971 1.21855 1.19501 0.91120 0.83442 1.42516 0.89743 1.44602 1.02349 1.01085 1.87018 1.21527 0.94245 0.83936 0.98865 1.22236 0.94405 0.93746 1.00305 0.88767 1.21185 0.89815 0.91076 0.95713 1.45834 1.38017 1.26971 1.25282 1.18628 0.82368 0.80481 0.84115 1.90738 1.61180 1.70913 1.23454 1.19814 0.99241 0.98235 0.97771 1.21090 0.96772 1.00425 0.93527 1.21272 0.96222 0.93830 1.00909 1.18558 0.96688 0.96021 0.93852 1.21397 0.95705 0.95365 1.01078 1.21351 0.99770 0.96497 0.94935 1.21258 0.96100 1.00448 0.95869 1.21345 0.97304 0.93912 1.00490 1.18262 0.97255 0.97054 0.95535 1.21553 0.93678 0.92419 0.98900 1.23011 0.83587 0.92965 0.96907 0.91508 1.86344 1.15815 1.58950 1.76410 1.22345 0.84842 0.94695 0.97324 0.94228 0.95028 0.94351 0.91070 0.92060 0.74955 0.83777 0.82070 0.82898 0.82976 0.83275 0.84246 0.84872 0.75605 0.90301 0.98903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.46 10.09 21.65 0.22 -55.25 16 2 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 3 Si 0.98 44.90 29.55 68.60 2.03 46.93 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.24 -12.98 10.27 84.03 0.86 -12.12 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -31.28 3.40 -691.61 -2.35 -33.63 16 10 C 0.14 5.42 6.64 86.73 0.58 6.00 16 11 C -0.09 -2.92 2.72 -9.60 -0.03 -2.95 16 12 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 13 C 0.15 4.40 5.00 86.38 0.43 4.84 16 14 N -0.71 -18.73 5.38 -466.03 -2.51 -21.24 16 15 C 0.56 16.32 7.77 86.77 0.67 16.99 16 16 O -0.58 -21.27 16.30 -3.91 -0.06 -21.34 16 17 C -0.15 -3.59 5.87 -20.11 -0.12 -3.70 16 18 C -0.10 -1.87 9.44 22.28 0.21 -1.66 16 19 C -0.10 -1.66 9.73 22.29 0.22 -1.44 16 20 C -0.05 -0.89 5.75 -21.25 -0.12 -1.01 16 21 C -0.12 -1.45 9.76 22.33 0.22 -1.23 16 22 C -0.11 -1.11 9.95 22.05 0.22 -0.89 16 23 C -0.12 -1.37 9.95 22.04 0.22 -1.15 16 24 C -0.11 -1.76 9.77 22.36 0.22 -1.54 16 25 C -0.08 -1.62 5.74 -21.31 -0.12 -1.74 16 26 C -0.05 -1.09 9.34 22.83 0.21 -0.87 16 27 C 0.10 3.58 3.89 32.06 0.12 3.70 16 28 H 0.07 2.44 8.05 -2.39 -0.02 2.42 16 29 O -0.57 -18.87 13.48 -148.98 -2.01 -20.87 16 30 C 0.13 6.45 5.63 86.92 0.49 6.94 16 31 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.03 1.23 7.73 -2.39 -0.02 1.21 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.00 8.00 -2.39 -0.02 1.98 16 36 H 0.41 8.83 6.38 -92.70 -0.59 8.24 16 37 H 0.14 2.10 6.34 -2.91 -0.02 2.08 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 40 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 41 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.13 3.19 7.61 -2.91 -0.02 3.17 16 44 H 0.39 10.10 9.12 -74.05 -0.68 9.43 16 45 H 0.08 4.29 5.87 -2.39 -0.01 4.28 16 46 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: -1.00 -73.91 380.30 -0.18 -74.09 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -0.25 Total: 26.45 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 4.75 Total: 4.86 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -4.64 Total: -110.11 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -2.07 Total: -42.21 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -73.91 -0.18 -74.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958612782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.222 kcal (2) G-P(sol) polarization free energy of solvation -73.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds