Wall clock time and date at job start Tue Mar 31 2020 22:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00091 * 2 1 4 4 H 1.48498 * 109.47134 * 270.00137 * 3 2 1 5 5 H 1.48500 * 109.47061 * 29.99983 * 3 2 1 6 6 H 1.48499 * 109.46950 * 150.00011 * 3 2 1 7 7 C 1.38820 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99526 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.06114 * 324.58154 * 10 9 7 12 12 C 1.55900 * 110.71887 * 202.70593 * 10 9 7 13 13 C 1.54105 * 106.85894 * 241.85090 * 12 10 9 14 14 C 1.54457 * 104.73388 * 336.36804 * 13 12 10 15 15 H 1.08998 * 114.49473 * 271.97543 * 14 13 12 16 16 C 1.54653 * 108.64158 * 143.53489 * 14 13 12 17 17 N 1.47351 * 105.22032 * 288.60125 * 16 14 13 18 18 C 1.34780 * 125.70191 * 155.13740 * 17 16 14 19 19 O 1.21652 * 120.00154 * 179.97438 * 18 17 16 20 20 C 1.46978 * 119.99729 * 359.96718 * 18 17 16 21 21 C 1.35810 * 125.13140 * 179.97438 * 20 18 17 22 22 C 1.46243 * 106.08312 * 180.02562 * 21 20 18 23 23 C 1.39697 * 134.19558 * 179.97438 * 22 21 20 24 24 C 1.36621 * 119.71453 * 179.97438 * 23 22 21 25 25 C 1.38833 * 120.44308 * 0.03513 * 24 23 22 26 26 C 1.37791 * 120.74464 * 359.97438 * 25 24 23 27 27 C 1.39031 * 119.85278 * 359.97438 * 26 25 24 28 28 O 1.34714 * 133.24002 * 180.33589 * 27 26 25 29 29 C 1.47026 * 108.59496 * 335.10828 * 17 16 14 30 30 C 1.53909 * 109.91444 * 85.77777 * 10 9 7 31 31 H 1.08990 * 112.92662 * 265.08514 * 30 10 9 32 32 H 0.96993 * 120.00145 * 359.97438 * 1 2 3 33 33 H 0.96993 * 120.00255 * 359.97438 * 9 7 2 34 34 H 1.09003 * 110.11136 * 122.38850 * 12 10 9 35 35 H 1.08994 * 109.77728 * 1.13625 * 12 10 9 36 36 H 1.08998 * 110.38667 * 217.55697 * 13 12 10 37 37 H 1.09001 * 110.48066 * 95.22828 * 13 12 10 38 38 H 1.09002 * 110.30718 * 169.63314 * 16 14 13 39 39 H 1.09000 * 110.30741 * 47.56418 * 16 14 13 40 40 H 1.08005 * 126.95730 * 359.97038 * 21 20 18 41 41 H 1.08010 * 120.14295 * 359.97438 * 23 22 21 42 42 H 1.08007 * 119.77968 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.62968 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.07406 * 180.02562 * 26 25 24 45 45 H 1.09003 * 109.82592 * 121.80562 * 29 17 16 46 46 H 1.08997 * 109.83115 * 242.68156 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9676 -3.5634 -0.5928 12 6 1.1690 -4.8071 -0.5623 13 6 1.0015 -5.8379 0.5709 14 6 2.2198 -5.6099 1.4926 15 1 3.1075 -6.1793 1.2172 16 6 1.7757 -5.8170 2.9594 17 7 0.9304 -4.6523 3.2757 18 6 -0.0327 -4.6120 4.2178 19 8 -0.6702 -3.5908 4.3927 20 6 -0.3126 -5.8020 5.0338 21 6 -1.2553 -5.8771 6.0085 22 6 -1.1771 -7.2357 6.5440 23 6 -1.8637 -7.9297 7.5433 24 6 -1.5412 -9.2306 7.8081 25 6 -0.5361 -9.8661 7.0915 26 6 0.1532 -9.1992 6.1022 27 6 -0.1580 -7.8752 5.8140 28 8 0.3237 -6.9868 4.9232 29 6 1.3136 -3.5411 2.3924 30 6 2.4125 -4.0575 1.4437 31 1 3.4126 -3.7405 1.7389 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 0.0005 34 1 1.6556 -5.2714 -1.4201 35 1 0.1960 -4.4120 -0.8543 36 1 1.0144 -6.8506 0.1681 37 1 0.0745 -5.6585 1.1157 38 1 2.6442 -5.8441 3.6174 39 1 1.2011 -6.7384 3.0542 40 1 -1.9264 -5.0921 6.3248 41 1 -2.6461 -7.4399 8.1041 42 1 -2.0717 -9.7683 8.5801 43 1 -0.2917 -10.8947 7.3120 44 1 0.9328 -9.7042 5.5512 45 1 0.4496 -3.2139 1.8139 46 1 1.6963 -2.7114 2.9867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026412123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:10 Heat of formation + Delta-G solvation = 22.463736 kcal Electronic energy + Delta-G solvation = -29524.452458 eV Core-core repulsion = 25573.940125 eV Total energy + Delta-G solvation = -3950.512333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.68722 -40.26645 -38.44021 -37.97340 -35.06769 -33.29073 -32.98198 -30.90925 -30.76656 -30.15710 -28.92202 -28.35082 -25.63366 -24.62505 -23.24046 -23.04030 -22.53876 -21.59533 -19.89221 -19.76364 -18.76970 -17.86658 -17.54498 -17.37676 -16.60739 -16.22142 -15.78949 -15.60169 -14.81174 -14.74338 -14.56020 -14.29523 -13.91449 -13.63911 -13.41517 -13.34160 -13.16814 -13.00679 -12.66350 -12.51256 -12.39646 -12.25835 -12.05519 -11.43785 -11.27439 -11.06148 -10.77315 -10.72887 -10.59363 -10.43380 -10.37112 -10.29512 -10.18732 -10.04554 -9.88886 -9.63317 -8.94740 -8.88944 -8.60365 -8.27397 -6.97157 -5.76794 -3.06808 0.37969 1.05337 1.69684 2.29378 3.11224 3.21077 3.40853 3.44167 3.49359 3.51586 4.16568 4.34140 4.56973 4.60785 4.60937 4.77200 4.82530 4.89032 4.93964 5.04488 5.11936 5.34649 5.50010 5.51336 5.54424 5.55583 5.59675 5.61939 5.78851 5.83980 5.93138 5.93673 5.96495 6.07513 6.09482 6.11121 6.13247 6.26169 6.29591 6.32302 6.47970 6.57069 6.68327 6.76564 6.79076 6.86904 6.96698 7.62765 7.70975 8.15435 8.40963 9.52129 10.08034 10.41586 11.45206 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002756 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.778950 B =10156.113284 C =11084.001507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.182 3.818 11 H 0.055 0.945 12 C -0.129 4.129 13 C -0.113 4.113 14 C -0.105 4.105 15 H 0.102 0.898 16 C 0.103 3.897 17 N -0.601 5.601 18 C 0.601 3.399 19 O -0.510 6.510 20 C -0.008 4.008 21 C -0.124 4.124 22 C -0.141 4.141 23 C -0.061 4.061 24 C -0.141 4.141 25 C -0.088 4.088 26 C -0.110 4.110 27 C 0.063 3.937 28 O -0.179 6.179 29 C 0.129 3.871 30 C -0.118 4.118 31 H 0.083 0.917 32 H 0.256 0.744 33 H 0.385 0.615 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.170 0.830 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.095 0.905 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -22.734 12.212 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.070 3.930 11 H 0.073 0.927 12 C -0.168 4.168 13 C -0.151 4.151 14 C -0.124 4.124 15 H 0.120 0.880 16 C -0.020 4.020 17 N -0.333 5.333 18 C 0.387 3.613 19 O -0.387 6.387 20 C -0.058 4.058 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.079 4.079 24 C -0.159 4.159 25 C -0.106 4.106 26 C -0.128 4.128 27 C 0.014 3.986 28 O -0.080 6.080 29 C 0.008 3.992 30 C -0.140 4.140 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.220 0.780 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.188 0.812 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.113 0.887 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.551 -22.018 12.116 25.138 hybrid contribution 0.115 0.973 0.209 1.002 sum 0.666 -21.046 12.325 24.398 Atomic orbital electron populations 1.69650 1.05097 1.25810 1.56961 1.24749 0.95455 0.97706 1.02628 0.86229 0.78700 0.84033 0.77427 1.21764 1.21788 1.20767 1.19195 0.90953 0.83986 1.43461 0.91137 1.42587 1.05711 0.99733 1.87801 1.21075 0.94436 0.86184 0.91272 0.92727 1.22741 1.00950 0.95907 0.97193 1.22204 0.97504 0.98605 0.96743 1.23247 0.98566 0.97575 0.93030 0.87989 1.22401 0.94343 0.88774 0.96503 1.48528 1.34101 1.15715 1.34959 1.16287 0.80533 0.84929 0.79555 1.90941 1.49694 1.29820 1.68240 1.22184 0.97206 0.85383 1.01004 1.22724 0.99584 0.95942 0.96217 1.19950 0.99693 0.94211 1.00293 1.20385 0.98300 0.94048 0.95214 1.20788 0.99038 0.94834 1.01230 1.20985 0.95218 0.99872 0.94559 1.19991 1.02704 0.89696 1.00406 1.19854 0.95492 0.92052 0.91159 1.84192 1.54469 1.19219 1.50160 1.22058 0.99648 0.86915 0.90584 1.23659 0.98007 0.92712 0.99664 0.89891 0.93395 0.78024 0.92042 0.91426 0.92204 0.91749 0.91610 0.90128 0.81249 0.85215 0.85216 0.84683 0.84800 0.88739 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.56 9.95 -15.06 -0.15 -6.71 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.13 3.61 -51.47 -0.19 -17.32 16 10 C 0.18 3.37 3.34 -65.91 -0.22 3.15 16 11 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 12 C -0.13 -2.03 6.64 -24.60 -0.16 -2.19 16 13 C -0.11 -1.53 5.85 -25.39 -0.15 -1.68 16 14 C -0.10 -1.35 4.29 -87.10 -0.37 -1.73 16 15 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 16 C 0.10 1.35 5.40 -2.71 -0.01 1.34 16 17 N -0.60 -10.09 2.84 -172.31 -0.49 -10.58 16 18 C 0.60 10.76 7.83 -12.72 -0.10 10.66 16 19 O -0.51 -10.96 17.16 5.23 0.09 -10.87 16 20 C -0.01 -0.12 6.89 -36.91 -0.25 -0.37 16 21 C -0.12 -1.66 10.80 -37.24 -0.40 -2.07 16 22 C -0.14 -1.66 6.38 -105.20 -0.67 -2.33 16 23 C -0.06 -0.56 10.06 -39.62 -0.40 -0.96 16 24 C -0.14 -1.03 9.98 -39.95 -0.40 -1.43 16 25 C -0.09 -0.63 10.01 -39.52 -0.40 -1.02 16 26 C -0.11 -0.97 10.07 -39.45 -0.40 -1.37 16 27 C 0.06 0.74 7.41 -38.35 -0.28 0.46 16 28 O -0.18 -2.39 7.67 2.77 0.02 -2.37 16 29 C 0.13 2.47 5.39 -3.18 -0.02 2.46 16 30 C -0.12 -1.95 3.92 -87.69 -0.34 -2.30 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.38 10.00 6.88 -40.82 -0.28 9.72 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.17 7.68 -51.93 -0.40 0.77 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.99 7.30 -51.93 -0.38 0.61 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.00 6.08 -51.93 -0.32 0.69 16 40 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 41 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 45 H 0.09 2.13 6.16 -51.93 -0.32 1.81 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -32.09 372.39 -10.39 -42.48 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.31 Total: 9.35 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -4.83 Total: -6.43 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.05 Total: -55.14 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.11 Total: -13.24 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.09 -10.39 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.949 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds