Wall clock time and date at job start Tue Mar 31 2020 22:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00091 * 2 1 4 4 H 1.48498 * 109.47134 * 270.00137 * 3 2 1 5 5 H 1.48500 * 109.47061 * 29.99983 * 3 2 1 6 6 H 1.48499 * 109.46950 * 150.00011 * 3 2 1 7 7 C 1.38820 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99526 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.06114 * 324.58154 * 10 9 7 12 12 C 1.55900 * 110.71887 * 202.70593 * 10 9 7 13 13 C 1.54105 * 106.85894 * 241.85090 * 12 10 9 14 14 C 1.54457 * 104.73388 * 336.36804 * 13 12 10 15 15 H 1.08998 * 114.49473 * 271.97543 * 14 13 12 16 16 C 1.54653 * 108.64158 * 143.53489 * 14 13 12 17 17 N 1.47351 * 105.22032 * 288.60125 * 16 14 13 18 18 C 1.34780 * 125.70191 * 155.13740 * 17 16 14 19 19 O 1.21652 * 120.00154 * 179.97438 * 18 17 16 20 20 C 1.46978 * 119.99729 * 359.96718 * 18 17 16 21 21 C 1.35810 * 125.13140 * 179.97438 * 20 18 17 22 22 C 1.46243 * 106.08312 * 180.02562 * 21 20 18 23 23 C 1.39697 * 134.19558 * 179.97438 * 22 21 20 24 24 C 1.36621 * 119.71453 * 179.97438 * 23 22 21 25 25 C 1.38833 * 120.44308 * 0.03513 * 24 23 22 26 26 C 1.37791 * 120.74464 * 359.97438 * 25 24 23 27 27 C 1.39031 * 119.85278 * 359.97438 * 26 25 24 28 28 O 1.34714 * 133.24002 * 180.33589 * 27 26 25 29 29 C 1.47026 * 108.59496 * 335.10828 * 17 16 14 30 30 C 1.53909 * 109.91444 * 85.77777 * 10 9 7 31 31 H 1.08990 * 112.92662 * 265.08514 * 30 10 9 32 32 H 0.96993 * 120.00145 * 359.97438 * 1 2 3 33 33 H 0.96993 * 120.00255 * 359.97438 * 9 7 2 34 34 H 1.09003 * 110.11136 * 122.38850 * 12 10 9 35 35 H 1.08994 * 109.77728 * 1.13625 * 12 10 9 36 36 H 1.08998 * 110.38667 * 217.55697 * 13 12 10 37 37 H 1.09001 * 110.48066 * 95.22828 * 13 12 10 38 38 H 1.09002 * 110.30718 * 169.63314 * 16 14 13 39 39 H 1.09000 * 110.30741 * 47.56418 * 16 14 13 40 40 H 1.08005 * 126.95730 * 359.97038 * 21 20 18 41 41 H 1.08010 * 120.14295 * 359.97438 * 23 22 21 42 42 H 1.08007 * 119.77968 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.62968 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.07406 * 180.02562 * 26 25 24 45 45 H 1.09003 * 109.82592 * 121.80562 * 29 17 16 46 46 H 1.08997 * 109.83115 * 242.68156 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9676 -3.5634 -0.5928 12 6 1.1690 -4.8071 -0.5623 13 6 1.0015 -5.8379 0.5709 14 6 2.2198 -5.6099 1.4926 15 1 3.1075 -6.1793 1.2172 16 6 1.7757 -5.8170 2.9594 17 7 0.9304 -4.6523 3.2757 18 6 -0.0327 -4.6120 4.2178 19 8 -0.6702 -3.5908 4.3927 20 6 -0.3126 -5.8020 5.0338 21 6 -1.2553 -5.8771 6.0085 22 6 -1.1771 -7.2357 6.5440 23 6 -1.8637 -7.9297 7.5433 24 6 -1.5412 -9.2306 7.8081 25 6 -0.5361 -9.8661 7.0915 26 6 0.1532 -9.1992 6.1022 27 6 -0.1580 -7.8752 5.8140 28 8 0.3237 -6.9868 4.9232 29 6 1.3136 -3.5411 2.3924 30 6 2.4125 -4.0575 1.4437 31 1 3.4126 -3.7405 1.7389 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 0.0005 34 1 1.6556 -5.2714 -1.4201 35 1 0.1960 -4.4120 -0.8543 36 1 1.0144 -6.8506 0.1681 37 1 0.0745 -5.6585 1.1157 38 1 2.6442 -5.8441 3.6174 39 1 1.2011 -6.7384 3.0542 40 1 -1.9264 -5.0921 6.3248 41 1 -2.6461 -7.4399 8.1041 42 1 -2.0717 -9.7683 8.5801 43 1 -0.2917 -10.8947 7.3120 44 1 0.9328 -9.7042 5.5512 45 1 0.4496 -3.2139 1.8139 46 1 1.6963 -2.7114 2.9867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026412123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:09 Heat of formation + Delta-G solvation = 3.885512 kcal Electronic energy + Delta-G solvation = -29525.258070 eV Core-core repulsion = 25573.940125 eV Total energy + Delta-G solvation = -3951.317945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.60564 -41.59763 -39.76175 -38.79021 -36.67439 -34.97626 -33.89186 -32.70682 -31.58095 -31.17594 -30.03092 -29.88969 -27.11312 -25.94126 -24.89117 -24.08887 -23.45252 -22.51408 -21.14696 -20.88423 -20.24848 -19.33813 -18.94124 -18.42577 -17.72376 -17.14105 -17.09037 -16.80998 -16.66479 -15.93936 -15.59118 -15.50182 -15.04661 -14.98629 -14.74420 -14.63562 -14.40099 -14.20321 -14.04439 -13.72924 -13.39401 -13.25808 -13.18154 -12.92344 -12.85783 -12.49315 -12.35601 -12.13757 -11.93666 -11.89285 -11.67659 -11.60292 -11.45946 -11.43809 -11.40948 -11.33293 -10.87793 -9.88246 -9.66479 -9.28692 -8.97867 -7.93403 -5.21343 -0.52758 0.34955 0.75511 1.25625 1.44687 1.46712 1.54418 1.89636 1.92969 2.55678 2.72404 3.15718 3.35520 3.39695 3.57147 3.63792 3.74880 3.87158 3.93122 4.15239 4.19706 4.26497 4.30438 4.31144 4.38208 4.41355 4.48011 4.55641 4.63391 4.69557 4.72167 4.76799 4.82039 4.95332 5.04519 5.05911 5.13917 5.20409 5.24573 5.26122 5.36176 5.38401 5.47284 5.48522 5.51271 5.57466 5.57826 6.01459 6.27868 6.31105 6.77355 7.33905 8.11195 8.31880 9.30157 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002756 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.778950 B =10156.113284 C =11084.001507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.730 5.730 10 C 0.170 3.830 11 H 0.061 0.939 12 C -0.122 4.122 13 C -0.107 4.107 14 C -0.082 4.082 15 H 0.148 0.852 16 C 0.102 3.898 17 N -0.601 5.601 18 C 0.595 3.405 19 O -0.566 6.566 20 C -0.035 4.035 21 C -0.117 4.117 22 C -0.166 4.166 23 C -0.070 4.070 24 C -0.134 4.134 25 C -0.072 4.072 26 C -0.119 4.119 27 C 0.045 3.955 28 O -0.181 6.181 29 C 0.138 3.862 30 C -0.113 4.113 31 H 0.091 0.909 32 H 0.247 0.753 33 H 0.369 0.631 34 H 0.089 0.911 35 H 0.041 0.959 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.169 0.831 41 H 0.146 0.854 42 H 0.164 0.836 43 H 0.175 0.825 44 H 0.157 0.843 45 H 0.053 0.947 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -27.608 13.385 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.193 1.193 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.369 5.369 10 C 0.061 3.939 11 H 0.079 0.921 12 C -0.161 4.161 13 C -0.145 4.145 14 C -0.101 4.101 15 H 0.165 0.835 16 C -0.019 4.019 17 N -0.331 5.331 18 C 0.384 3.616 19 O -0.447 6.447 20 C -0.084 4.084 21 C -0.138 4.138 22 C -0.167 4.167 23 C -0.088 4.088 24 C -0.152 4.152 25 C -0.090 4.090 26 C -0.137 4.137 27 C -0.003 4.003 28 O -0.083 6.083 29 C 0.016 3.984 30 C -0.135 4.135 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.201 0.799 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.186 0.814 41 H 0.163 0.837 42 H 0.182 0.818 43 H 0.192 0.808 44 H 0.174 0.826 45 H 0.071 0.929 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.639 -26.976 13.283 30.185 hybrid contribution -0.548 2.245 -0.018 2.311 sum 2.090 -24.731 13.265 28.142 Atomic orbital electron populations 1.69828 1.06735 1.25750 1.59900 1.25537 0.96201 1.01097 1.04243 0.85224 0.77743 0.79964 0.77386 1.21254 1.23072 1.19269 1.19614 0.91462 0.85029 1.40179 0.90156 1.42785 1.05163 1.01102 1.87858 1.21419 0.94685 0.85046 0.92713 0.92095 1.22676 0.99168 0.95351 0.98875 1.22181 0.96727 0.99777 0.95815 1.23345 0.99736 0.94484 0.92511 0.83469 1.22648 0.94492 0.87707 0.97081 1.48577 1.34218 1.16176 1.34140 1.16714 0.79913 0.85390 0.79556 1.90887 1.51642 1.32181 1.70004 1.21462 0.99259 0.85592 1.02127 1.22952 0.98399 0.97121 0.95318 1.20110 1.01179 0.93393 1.01999 1.20722 0.98498 0.95005 0.94616 1.21270 0.98620 0.93986 1.01288 1.21548 0.93535 1.01305 0.92568 1.20432 1.03644 0.88394 1.01200 1.20397 0.95838 0.92983 0.91061 1.84098 1.54552 1.18691 1.50988 1.21702 0.98833 0.87331 0.90545 1.23534 0.96989 0.95966 0.97030 0.89026 0.94371 0.79883 0.89216 0.94047 0.88475 0.94361 0.89732 0.88668 0.81362 0.83671 0.81846 0.80780 0.82563 0.92866 0.95103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.23 -12.73 9.95 84.04 0.84 -11.90 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.73 -36.44 3.61 -316.75 -1.14 -37.58 16 10 C 0.17 6.30 3.34 46.30 0.15 6.46 16 11 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 12 C -0.12 -3.72 6.64 31.97 0.21 -3.51 16 13 C -0.11 -2.69 5.85 31.46 0.18 -2.51 16 14 C -0.08 -1.87 4.29 -8.51 -0.04 -1.91 16 15 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 16 C 0.10 2.52 5.40 86.78 0.47 2.99 16 17 N -0.60 -21.12 2.84 -817.30 -2.32 -23.44 16 18 C 0.60 23.02 7.83 86.53 0.68 23.70 16 19 O -0.57 -26.91 17.16 -4.19 -0.07 -26.98 16 20 C -0.03 -1.09 6.89 24.00 0.17 -0.92 16 21 C -0.12 -3.29 10.80 23.79 0.26 -3.03 16 22 C -0.17 -3.79 6.38 -20.24 -0.13 -3.92 16 23 C -0.07 -1.11 10.06 22.24 0.22 -0.89 16 24 C -0.13 -1.37 9.98 22.03 0.22 -1.15 16 25 C -0.07 -0.66 10.01 22.31 0.22 -0.44 16 26 C -0.12 -1.67 10.07 22.35 0.23 -1.45 16 27 C 0.04 1.00 7.41 23.07 0.17 1.17 16 28 O -0.18 -4.74 7.67 -12.99 -0.10 -4.84 16 29 C 0.14 5.68 5.39 86.65 0.47 6.14 16 30 C -0.11 -3.69 3.92 -8.89 -0.03 -3.73 16 31 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.37 20.61 6.88 -92.71 -0.64 19.97 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.04 1.48 7.68 -2.39 -0.02 1.46 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.17 7.30 -2.39 -0.02 1.15 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 2.15 6.08 -2.39 -0.01 2.14 16 40 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 43 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 44 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.05 2.64 6.16 -2.39 -0.01 2.62 16 46 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -78.01 372.39 3.80 -74.21 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.37 Total: 29.77 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 4.75 Total: 0.93 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -3.18 Total: -122.72 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.17 Total: -31.82 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -78.01 3.80 -74.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.091 kcal (2) G-P(sol) polarization free energy of solvation -78.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds