Wall clock time and date at job start Tue Mar 31 2020 22:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21656 * 120.00225 * 179.97438 * 18 17 16 20 20 C 1.46979 * 119.99454 * 359.96560 * 18 17 16 21 21 C 1.35809 * 125.12843 * 179.71706 * 20 18 17 22 22 C 1.46252 * 106.07994 * 179.86112 * 21 20 18 23 23 C 1.39706 * 134.18894 * 180.14998 * 22 21 20 24 24 C 1.36613 * 119.70991 * 180.31112 * 23 22 21 25 25 C 1.38842 * 120.44266 * 359.95825 * 24 23 22 26 26 C 1.37790 * 120.74651 * 0.02562 * 25 24 23 27 27 C 1.39035 * 119.85498 * 0.02562 * 26 25 24 28 28 O 1.34714 * 133.24565 * 180.02562 * 27 26 25 29 29 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 30 30 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 31 31 H 1.09001 * 109.99421 * 198.25759 * 30 10 9 32 32 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 34 34 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 35 35 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 36 36 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 37 37 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 38 38 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 39 39 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 40 40 H 1.07998 * 126.96230 * 359.96398 * 21 20 18 41 41 H 1.08003 * 120.14277 * 0.30880 * 23 22 21 42 42 H 1.07999 * 119.77816 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.62616 * 180.02562 * 25 24 23 44 44 H 1.07995 * 120.07378 * 180.02562 * 26 25 24 45 45 H 1.09000 * 110.84547 * 216.66722 * 29 17 16 46 46 H 1.08998 * 111.01935 * 93.13449 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9951 -3.5524 0.5609 12 6 2.3253 -4.1406 -1.4447 13 6 1.4374 -5.4132 -1.6402 14 6 0.3419 -5.1772 -0.6282 15 1 -0.2834 -4.3444 -0.9503 16 6 -0.5069 -6.2439 0.0062 17 7 -0.7350 -5.7712 1.4029 18 6 -1.5540 -6.3405 2.3093 19 8 -1.6563 -5.8608 3.4226 20 6 -2.3237 -7.5407 1.9526 21 6 -3.1724 -8.2002 2.7828 22 6 -3.7100 -9.3180 2.0079 23 6 -4.6153 -10.3463 2.2814 24 6 -4.9101 -11.2642 1.3134 25 6 -4.3168 -11.1808 0.0609 26 6 -3.4217 -10.1742 -0.2290 27 6 -3.1051 -9.2291 0.7404 28 8 -2.2885 -8.1577 0.7530 29 6 0.1077 -4.5529 1.6194 30 6 1.2163 -4.7473 0.6142 31 1 1.8479 -5.5839 0.9131 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3880 0.0068 34 1 2.0364 -3.3673 -2.1565 35 1 3.3781 -4.3937 -1.5700 36 1 1.9964 -6.3193 -1.4067 37 1 1.0326 -5.4561 -2.6513 38 1 0.0221 -7.1970 0.0100 39 1 -1.4557 -6.3396 -0.5216 40 1 -3.4047 -7.9490 3.8071 41 1 -5.0800 -10.4153 3.2539 42 1 -5.6094 -12.0598 1.5238 43 1 -4.5597 -11.9132 -0.6947 44 1 -2.9669 -10.1194 -1.2070 45 1 0.5040 -4.5308 2.6345 46 1 -0.4556 -3.6448 1.4049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026412126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:24 Heat of formation + Delta-G solvation = 31.826568 kcal Electronic energy + Delta-G solvation = -29106.624297 eV Core-core repulsion = 25156.517967 eV Total energy + Delta-G solvation = -3950.106330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.72733 -40.47689 -38.70282 -38.05629 -35.31301 -33.36416 -33.04113 -30.90241 -30.81983 -30.33516 -29.01852 -28.53071 -25.65538 -24.56320 -23.36119 -23.07527 -22.53850 -21.63501 -20.01682 -19.85531 -18.92825 -17.80029 -17.59412 -17.47982 -16.64968 -16.35481 -15.94648 -15.38079 -15.07952 -14.66666 -14.38620 -14.35844 -14.27959 -13.80775 -13.68843 -13.49084 -13.25492 -12.90868 -12.64668 -12.61070 -12.35630 -12.28768 -11.90762 -11.55370 -11.32319 -11.22101 -11.00774 -10.86385 -10.66700 -10.54747 -10.48646 -10.26623 -10.17841 -10.05827 -9.64401 -9.61474 -8.98595 -8.94452 -8.74755 -8.44234 -6.99507 -5.79216 -3.08379 0.32376 1.02023 1.62717 2.22902 2.86165 3.09364 3.37105 3.42406 3.48328 3.50455 3.99096 4.24656 4.32106 4.57568 4.57833 4.73915 4.81830 4.90845 4.93157 5.03758 5.16019 5.29257 5.32831 5.45640 5.50255 5.53027 5.59938 5.61573 5.74583 5.79466 5.82553 5.89931 5.93583 5.98693 6.04473 6.07003 6.07841 6.17535 6.25055 6.29663 6.35999 6.42078 6.50740 6.64186 6.77780 6.80331 7.03043 7.41698 7.69897 7.96642 8.39039 9.50576 10.06409 10.40860 11.43231 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.002451 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.939246 B =11419.442656 C =12086.038638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.195 3.805 11 H 0.058 0.942 12 C -0.145 4.145 13 C -0.095 4.095 14 C -0.129 4.129 15 H 0.090 0.910 16 C 0.124 3.876 17 N -0.611 5.611 18 C 0.608 3.392 19 O -0.518 6.518 20 C -0.010 4.010 21 C -0.122 4.122 22 C -0.142 4.142 23 C -0.061 4.061 24 C -0.140 4.140 25 C -0.087 4.087 26 C -0.109 4.109 27 C 0.066 3.934 28 O -0.178 6.178 29 C 0.132 3.868 30 C -0.121 4.121 31 H 0.076 0.924 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.170 0.830 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.081 0.919 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 -24.563 -0.781 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.083 3.917 11 H 0.076 0.924 12 C -0.186 4.186 13 C -0.133 4.133 14 C -0.148 4.148 15 H 0.109 0.891 16 C 0.003 3.997 17 N -0.344 5.344 18 C 0.395 3.605 19 O -0.396 6.396 20 C -0.060 4.060 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.079 4.079 24 C -0.159 4.159 25 C -0.105 4.105 26 C -0.128 4.128 27 C 0.017 3.983 28 O -0.079 6.079 29 C 0.012 3.988 30 C -0.141 4.141 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.187 0.813 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.100 0.900 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.581 -24.066 -0.342 24.952 hybrid contribution -0.021 0.870 -0.034 0.871 sum -6.602 -23.195 -0.376 24.119 Atomic orbital electron populations 1.69655 1.05098 1.25627 1.57594 1.24739 0.95487 0.97701 1.02908 0.86142 0.78796 0.84230 0.77148 1.20566 1.21955 1.21902 1.19289 0.91058 0.84019 1.42728 0.91026 1.42447 1.05689 0.99586 1.88237 1.20137 0.94040 0.85233 0.92256 0.92401 1.23861 0.97908 0.96117 1.00668 1.21703 0.95435 0.98636 0.97505 1.22254 0.96930 0.98664 0.96966 0.89136 1.21334 1.00068 0.97322 0.81009 1.49780 1.42426 1.29188 1.12979 1.16256 0.79002 0.81088 0.84190 1.90901 1.65713 1.62616 1.20402 1.22062 1.02698 0.97054 0.84212 1.22717 0.97059 0.93796 1.00653 1.19949 1.01755 0.98493 0.94133 1.20377 0.95377 0.92361 0.99814 1.20796 1.01597 0.99963 0.93495 1.21001 0.95306 0.97014 0.97173 1.20012 1.00875 0.93658 0.98216 1.19824 0.93043 0.89308 0.96094 1.84154 1.55289 1.35212 1.33284 1.21549 0.90941 0.86417 0.99898 1.22508 0.96199 1.00691 0.94741 0.90592 0.93520 0.78147 0.90510 0.92778 0.92046 0.91983 0.91145 0.90677 0.81252 0.85206 0.85175 0.84615 0.84707 0.90024 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.38 9.96 -15.06 -0.15 -6.53 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -16.85 4.80 -53.20 -0.26 -17.11 16 10 C 0.19 3.59 3.46 -67.70 -0.23 3.35 16 11 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 12 C -0.14 -2.32 6.73 -23.33 -0.16 -2.48 16 13 C -0.09 -1.24 6.71 -25.91 -0.17 -1.41 16 14 C -0.13 -1.86 2.73 -90.27 -0.25 -2.10 16 15 H 0.09 1.52 7.64 -51.93 -0.40 1.13 16 16 C 0.12 1.66 5.43 -3.86 -0.02 1.64 16 17 N -0.61 -9.60 3.43 -172.99 -0.59 -10.19 16 18 C 0.61 10.01 7.86 -12.72 -0.10 9.91 16 19 O -0.52 -9.93 17.16 5.23 0.09 -9.84 16 20 C -0.01 -0.15 6.91 -36.91 -0.26 -0.40 16 21 C -0.12 -1.52 10.81 -37.23 -0.40 -1.92 16 22 C -0.14 -1.61 6.38 -105.19 -0.67 -2.28 16 23 C -0.06 -0.53 10.06 -39.62 -0.40 -0.92 16 24 C -0.14 -0.98 9.98 -39.94 -0.40 -1.38 16 25 C -0.09 -0.60 10.01 -39.52 -0.40 -0.99 16 26 C -0.11 -0.96 10.07 -39.45 -0.40 -1.35 16 27 C 0.07 0.76 7.41 -38.35 -0.28 0.48 16 28 O -0.18 -2.32 8.17 2.79 0.02 -2.30 16 29 C 0.13 2.27 6.53 -3.31 -0.02 2.24 16 30 C -0.12 -1.92 2.60 -90.34 -0.23 -2.15 16 31 H 0.08 1.10 8.13 -51.93 -0.42 0.67 16 32 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.38 9.63 6.19 -40.82 -0.25 9.37 16 34 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.07 0.97 7.38 -51.93 -0.38 0.59 16 40 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 41 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 44 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 46 H 0.09 1.79 6.96 -51.93 -0.36 1.43 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -31.33 376.02 -10.42 -41.75 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.42 Total: 8.54 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -4.64 Total: -6.75 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.12 Total: -54.14 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.11 Total: -12.14 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.33 -10.42 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.580 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds