Wall clock time and date at job start Tue Mar 31 2020 22:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21656 * 120.00225 * 179.97438 * 18 17 16 20 20 C 1.46979 * 119.99454 * 359.96560 * 18 17 16 21 21 C 1.35809 * 125.12843 * 179.71706 * 20 18 17 22 22 C 1.46252 * 106.07994 * 179.86112 * 21 20 18 23 23 C 1.39706 * 134.18894 * 180.14998 * 22 21 20 24 24 C 1.36613 * 119.70991 * 180.31112 * 23 22 21 25 25 C 1.38842 * 120.44266 * 359.95825 * 24 23 22 26 26 C 1.37790 * 120.74651 * 0.02562 * 25 24 23 27 27 C 1.39035 * 119.85498 * 0.02562 * 26 25 24 28 28 O 1.34714 * 133.24565 * 180.02562 * 27 26 25 29 29 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 30 30 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 31 31 H 1.09001 * 109.99421 * 198.25759 * 30 10 9 32 32 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 34 34 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 35 35 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 36 36 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 37 37 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 38 38 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 39 39 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 40 40 H 1.07998 * 126.96230 * 359.96398 * 21 20 18 41 41 H 1.08003 * 120.14277 * 0.30880 * 23 22 21 42 42 H 1.07999 * 119.77816 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.62616 * 180.02562 * 25 24 23 44 44 H 1.07995 * 120.07378 * 180.02562 * 26 25 24 45 45 H 1.09000 * 110.84547 * 216.66722 * 29 17 16 46 46 H 1.08998 * 111.01935 * 93.13449 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9951 -3.5524 0.5609 12 6 2.3253 -4.1406 -1.4447 13 6 1.4374 -5.4132 -1.6402 14 6 0.3419 -5.1772 -0.6282 15 1 -0.2834 -4.3444 -0.9503 16 6 -0.5069 -6.2439 0.0062 17 7 -0.7350 -5.7712 1.4029 18 6 -1.5540 -6.3405 2.3093 19 8 -1.6563 -5.8608 3.4226 20 6 -2.3237 -7.5407 1.9526 21 6 -3.1724 -8.2002 2.7828 22 6 -3.7100 -9.3180 2.0079 23 6 -4.6153 -10.3463 2.2814 24 6 -4.9101 -11.2642 1.3134 25 6 -4.3168 -11.1808 0.0609 26 6 -3.4217 -10.1742 -0.2290 27 6 -3.1051 -9.2291 0.7404 28 8 -2.2885 -8.1577 0.7530 29 6 0.1077 -4.5529 1.6194 30 6 1.2163 -4.7473 0.6142 31 1 1.8479 -5.5839 0.9131 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3880 0.0068 34 1 2.0364 -3.3673 -2.1565 35 1 3.3781 -4.3937 -1.5700 36 1 1.9964 -6.3193 -1.4067 37 1 1.0326 -5.4561 -2.6513 38 1 0.0221 -7.1970 0.0100 39 1 -1.4557 -6.3396 -0.5216 40 1 -3.4047 -7.9490 3.8071 41 1 -5.0800 -10.4153 3.2539 42 1 -5.6094 -12.0598 1.5238 43 1 -4.5597 -11.9132 -0.6947 44 1 -2.9669 -10.1194 -1.2070 45 1 0.5040 -4.5308 2.6345 46 1 -0.4556 -3.6448 1.4049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026412126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:22 Heat of formation + Delta-G solvation = 14.009080 kcal Electronic energy + Delta-G solvation = -29107.396922 eV Core-core repulsion = 25156.517967 eV Total energy + Delta-G solvation = -3950.878954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -43.58787 -41.76089 -39.96408 -38.78744 -36.80103 -35.10492 -33.88444 -32.62169 -31.71642 -31.25275 -30.16981 -29.89341 -27.12867 -25.63933 -25.18476 -24.00445 -23.45655 -22.50367 -21.20565 -20.93010 -20.36753 -19.42977 -18.79025 -18.45403 -17.72431 -17.42650 -16.94570 -16.66398 -16.53313 -15.93886 -15.77474 -15.45529 -15.28053 -15.04227 -14.96329 -14.72053 -14.28289 -14.19963 -13.88787 -13.70880 -13.28890 -13.27440 -13.18609 -12.91531 -12.86217 -12.68385 -12.43072 -12.18901 -12.10620 -11.93274 -11.91038 -11.54437 -11.46708 -11.39881 -11.32524 -10.98000 -10.90384 -10.00117 -9.67599 -9.29627 -8.97309 -7.92458 -5.19758 -0.52663 0.34959 0.75271 1.23644 1.47168 1.48069 1.57467 1.73977 1.92324 2.57305 2.72351 2.86790 3.19100 3.41946 3.57848 3.70667 3.80253 3.88349 3.94305 4.00264 4.15991 4.19793 4.24767 4.31430 4.38596 4.43004 4.46935 4.52285 4.55419 4.63928 4.68584 4.80476 4.80749 4.88722 4.93376 5.00808 5.08562 5.14302 5.20462 5.25723 5.35517 5.37112 5.43431 5.48448 5.54535 5.57366 5.67491 6.01095 6.19200 6.30135 6.70358 7.36271 8.13162 8.34937 9.31207 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.002451 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.939246 B =11419.442656 C =12086.038638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.299 1.299 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.730 5.730 10 C 0.184 3.816 11 H 0.055 0.945 12 C -0.137 4.137 13 C -0.080 4.080 14 C -0.115 4.115 15 H 0.058 0.942 16 C 0.132 3.868 17 N -0.612 5.612 18 C 0.605 3.395 19 O -0.559 6.559 20 C -0.040 4.040 21 C -0.111 4.111 22 C -0.167 4.167 23 C -0.068 4.068 24 C -0.135 4.135 25 C -0.072 4.072 26 C -0.122 4.122 27 C 0.045 3.955 28 O -0.185 6.185 29 C 0.135 3.865 30 C -0.118 4.118 31 H 0.102 0.898 32 H 0.248 0.752 33 H 0.372 0.628 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.153 0.847 45 H 0.071 0.929 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -28.533 -2.182 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.227 1.227 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.370 5.370 10 C 0.074 3.926 11 H 0.073 0.927 12 C -0.177 4.177 13 C -0.118 4.118 14 C -0.134 4.134 15 H 0.077 0.923 16 C 0.011 3.989 17 N -0.344 5.344 18 C 0.394 3.606 19 O -0.440 6.440 20 C -0.089 4.089 21 C -0.132 4.132 22 C -0.167 4.167 23 C -0.086 4.086 24 C -0.153 4.153 25 C -0.090 4.090 26 C -0.140 4.140 27 C -0.002 4.002 28 O -0.087 6.087 29 C 0.014 3.986 30 C -0.138 4.138 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.205 0.795 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.192 0.808 41 H 0.166 0.834 42 H 0.182 0.818 43 H 0.190 0.810 44 H 0.170 0.830 45 H 0.089 0.911 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.381 -28.093 -1.775 28.863 hybrid contribution -0.158 1.890 0.402 1.939 sum -6.538 -26.203 -1.373 27.042 Atomic orbital electron populations 1.69818 1.06604 1.25689 1.60151 1.25499 0.96254 1.00941 1.04358 0.85142 0.78430 0.80318 0.76310 1.18828 1.22374 1.22691 1.19683 0.91500 0.85146 1.39907 0.90344 1.42619 1.05336 1.00745 1.88308 1.20442 0.93816 0.83966 0.94330 0.92663 1.23652 0.99950 0.96745 0.97389 1.21668 0.94207 0.98177 0.97770 1.22177 0.96652 0.97951 0.96621 0.92346 1.21399 1.00420 0.97663 0.79385 1.49816 1.42072 1.28502 1.13979 1.16571 0.78718 0.81575 0.83710 1.90856 1.67073 1.64122 1.21980 1.21527 1.04380 0.97423 0.85589 1.22974 0.95792 0.93717 1.00743 1.20141 1.03332 0.99246 0.94031 1.20731 0.94715 0.91810 1.01353 1.21272 1.01224 0.99840 0.92918 1.21536 0.93218 0.96342 0.97888 1.20418 1.01598 0.93474 0.98521 1.20355 0.93235 0.89466 0.97187 1.84074 1.56138 1.35963 1.32537 1.21300 0.91375 0.86073 0.99847 1.22370 0.96061 1.00375 0.95007 0.87945 0.94327 0.79531 0.93403 0.90511 0.88809 0.90512 0.88689 0.90186 0.80767 0.83383 0.81831 0.80978 0.82955 0.91063 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 7 C -0.23 -12.51 9.96 84.03 0.84 -11.67 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -35.48 4.80 -322.23 -1.55 -37.03 16 10 C 0.18 6.76 3.46 45.14 0.16 6.92 16 11 H 0.06 2.05 8.09 -2.39 -0.02 2.03 16 12 C -0.14 -4.19 6.73 32.80 0.22 -3.97 16 13 C -0.08 -1.88 6.71 31.13 0.21 -1.67 16 14 C -0.11 -3.22 2.73 -10.56 -0.03 -3.25 16 15 H 0.06 2.04 7.64 -2.39 -0.02 2.02 16 16 C 0.13 3.41 5.43 85.00 0.46 3.87 16 17 N -0.61 -19.88 3.43 -819.45 -2.81 -22.69 16 18 C 0.61 20.94 7.86 86.53 0.68 21.62 16 19 O -0.56 -22.85 17.16 -4.21 -0.07 -22.92 16 20 C -0.04 -1.15 6.91 24.00 0.17 -0.99 16 21 C -0.11 -2.84 10.81 23.79 0.26 -2.58 16 22 C -0.17 -3.59 6.38 -20.23 -0.13 -3.72 16 23 C -0.07 -0.99 10.06 22.24 0.22 -0.77 16 24 C -0.13 -1.32 9.98 22.03 0.22 -1.10 16 25 C -0.07 -0.68 10.01 22.31 0.22 -0.46 16 26 C -0.12 -1.78 10.07 22.35 0.23 -1.55 16 27 C 0.05 0.99 7.41 23.07 0.17 1.16 16 28 O -0.18 -4.76 8.17 -12.95 -0.11 -4.87 16 29 C 0.14 4.91 6.53 85.07 0.56 5.47 16 30 C -0.12 -3.72 2.60 -10.61 -0.03 -3.75 16 31 H 0.10 2.75 8.13 -2.39 -0.02 2.73 16 32 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.37 19.79 6.19 -92.71 -0.57 19.21 16 34 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 2.05 8.09 -2.38 -0.02 2.03 16 39 H 0.08 2.03 7.38 -2.39 -0.02 2.01 16 40 H 0.17 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 43 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 46 H 0.06 2.40 6.96 -2.39 -0.02 2.38 16 Total: -1.00 -72.61 376.02 3.09 -69.51 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.43 Total: 29.66 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 4.89 Total: -0.48 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -4.07 Total: -119.47 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.18 Total: -27.79 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -72.61 3.09 -69.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.523 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds