Wall clock time and date at job start Tue Mar 31 2020 22:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48511 * 109.46935 * 239.99588 * 3 2 1 5 5 H 1.48491 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47300 * 120.00135 * 3 2 1 7 7 C 1.38817 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00051 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.49962 * 126.74353 * 0.35524 * 9 7 2 11 11 C 1.56015 * 104.09919 * 182.13337 * 10 9 7 12 12 H 1.09003 * 116.24639 * 159.11971 * 11 10 9 13 13 C 1.57086 * 100.42092 * 32.48753 * 11 10 9 14 14 C 1.49290 * 126.94581 * 179.97438 * 9 7 2 15 15 H 1.08994 * 116.78377 * 16.31168 * 14 9 7 16 16 C 1.55997 * 104.31912 * 246.61625 * 14 9 7 17 17 N 1.47861 * 105.11439 * 289.11288 * 16 14 9 18 18 C 1.34780 * 126.94411 * 181.87201 * 17 16 14 19 19 O 1.21280 * 120.00423 * 179.68414 * 18 17 16 20 20 C 1.50701 * 119.99795 * 359.69090 * 18 17 16 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47466 * 179.97438 * 21 20 18 23 23 C 1.34000 * 124.92201 * 89.99898 * 22 21 20 24 24 C 1.46780 * 106.18483 * 179.97438 * 23 22 21 25 25 C 1.39409 * 134.36846 * 179.97438 * 24 23 22 26 26 C 1.36744 * 119.71446 * 179.97438 * 25 24 23 27 27 C 1.38746 * 120.41479 * 0.07819 * 26 25 24 28 28 C 1.37843 * 120.68950 * 359.94218 * 27 26 25 29 29 C 1.38942 * 119.81756 * 0.02562 * 28 27 26 30 30 O 1.34448 * 124.92494 * 269.69639 * 22 21 20 31 31 H 0.97003 * 119.99793 * 0.02562 * 1 2 3 32 32 H 1.08999 * 111.27905 * 63.31710 * 10 9 7 33 33 H 1.08996 * 110.31636 * 300.47560 * 10 9 7 34 34 H 1.09003 * 112.36449 * 64.06362 * 13 11 10 35 35 H 1.09001 * 112.36739 * 191.42078 * 13 11 10 36 36 H 1.08997 * 110.41347 * 170.14321 * 16 14 9 37 37 H 1.08997 * 110.19915 * 47.97015 * 16 14 9 38 38 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 39 39 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 40 40 H 1.09002 * 109.47153 * 299.99998 * 21 20 18 41 41 H 1.08998 * 109.47533 * 59.99628 * 21 20 18 42 42 H 1.07998 * 126.90663 * 359.96343 * 23 22 21 43 43 H 1.07997 * 120.14336 * 359.97438 * 25 24 23 44 44 H 1.07995 * 119.79072 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.65502 * 179.97438 * 27 26 25 46 46 H 1.07995 * 120.09153 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1637 -2.5642 -0.0075 11 6 -0.3640 -4.1102 0.0529 12 1 -1.3352 -4.4571 0.4058 13 6 0.8835 -4.5250 0.9128 14 6 1.9101 -3.7618 0.0005 15 1 2.9617 -3.8481 0.2738 16 6 1.5092 -4.3517 -1.3868 17 7 0.0514 -4.5835 -1.3005 18 6 -0.7413 -5.1192 -2.2499 19 8 -1.9281 -5.2576 -2.0418 20 6 -0.1529 -5.5462 -3.5699 21 6 -1.2584 -6.1173 -4.4602 22 6 -0.6702 -6.5438 -5.7804 23 6 -0.1816 -7.7633 -6.0444 24 6 0.2792 -7.7267 -7.4375 25 6 0.8733 -8.6538 -8.2925 26 6 1.1882 -8.2907 -9.5727 27 6 0.9216 -7.0061 -10.0242 28 6 0.3351 -6.0758 -9.1931 29 6 0.0066 -6.4244 -7.8888 30 8 -0.5648 -5.7576 -6.8660 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6049 -2.1607 -0.9189 33 1 -0.6055 -2.0909 0.8694 34 1 0.8442 -4.1186 1.9234 35 1 1.0477 -5.6026 0.9126 36 1 2.0319 -5.2912 -1.5659 37 1 1.7325 -3.6367 -2.1786 38 1 0.3011 -4.6854 -4.0608 39 1 0.6064 -6.3095 -3.3994 40 1 -1.7120 -6.9782 -3.9691 41 1 -2.0180 -5.3544 -4.6308 42 1 -0.1358 -8.6040 -5.3680 43 1 1.0838 -9.6545 -7.9453 44 1 1.6480 -9.0081 -10.2362 45 1 1.1758 -6.7324 -11.0375 46 1 0.1316 -5.0788 -9.5547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032509222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:50 Heat of formation + Delta-G solvation = 49.809854 kcal Electronic energy + Delta-G solvation = -28586.330496 eV Core-core repulsion = 24637.003980 eV Total energy + Delta-G solvation = -3949.326516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.63502 -40.06533 -38.22634 -37.90991 -34.24920 -33.58856 -32.43251 -31.51727 -30.63384 -29.40852 -28.70247 -28.42571 -25.35326 -25.05307 -23.39391 -22.96935 -21.92953 -21.14158 -20.31332 -19.86511 -18.42084 -17.56022 -17.46889 -16.88292 -16.36281 -16.27580 -15.75225 -15.52111 -15.34222 -14.65138 -14.33658 -14.03358 -13.92416 -13.77974 -13.38425 -13.28249 -12.88640 -12.66651 -12.53079 -12.23465 -12.17978 -12.01658 -11.89014 -11.65414 -11.32137 -11.27725 -11.05485 -11.03762 -10.87212 -10.79219 -10.60480 -10.31953 -10.29282 -10.11216 -9.63227 -9.50956 -8.84457 -8.74183 -8.32901 -8.04558 -6.96244 -5.78632 -3.13065 0.68111 1.13274 2.14282 2.50614 2.99111 3.36077 3.37723 3.40722 3.42796 3.48823 4.16358 4.39803 4.44074 4.68335 4.74755 4.86060 4.90715 4.94028 5.00344 5.05465 5.15959 5.18190 5.24864 5.34348 5.43675 5.48770 5.54150 5.61411 5.61791 5.74678 5.76946 5.87866 5.90400 6.01556 6.03735 6.15253 6.18640 6.24400 6.25523 6.37964 6.45749 6.46047 6.56414 6.65965 7.02395 7.38906 7.44260 7.67930 8.02812 8.07097 8.52808 9.05217 9.68561 10.37170 11.33791 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002389 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.866681 B =11720.000545 C =12746.681487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.176 3.824 11 C 0.096 3.904 12 H 0.112 0.888 13 C -0.151 4.151 14 C 0.143 3.857 15 H 0.106 0.894 16 C 0.082 3.918 17 N -0.605 5.605 18 C 0.529 3.471 19 O -0.557 6.557 20 C -0.132 4.132 21 C -0.031 4.031 22 C 0.050 3.950 23 C -0.212 4.212 24 C -0.127 4.127 25 C -0.074 4.074 26 C -0.138 4.138 27 C -0.099 4.099 28 C -0.105 4.105 29 C 0.050 3.950 30 O -0.190 6.190 31 H 0.255 0.745 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.158 0.842 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.133 0.867 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 -17.724 -13.698 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.052 3.948 11 C -0.006 4.006 12 H 0.130 0.870 13 C -0.191 4.191 14 C 0.034 3.966 15 H 0.124 0.876 16 C -0.044 4.044 17 N -0.338 5.338 18 C 0.317 3.683 19 O -0.437 6.437 20 C -0.172 4.172 21 C -0.068 4.068 22 C 0.002 3.998 23 C -0.231 4.231 24 C -0.128 4.128 25 C -0.092 4.092 26 C -0.156 4.156 27 C -0.117 4.117 28 C -0.124 4.124 29 C 0.002 3.998 30 O -0.091 6.091 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.176 0.824 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.151 0.849 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.729 -17.240 -13.672 22.070 hybrid contribution 0.575 0.861 -0.169 1.049 sum 2.304 -16.379 -13.841 21.567 Atomic orbital electron populations 1.69892 1.04952 1.25461 1.56353 1.24814 0.95686 0.97711 1.02067 0.86195 0.78449 0.83171 0.77883 1.21177 1.21622 1.21102 1.19013 0.90344 0.82178 1.44505 0.90239 1.45725 1.01220 0.99145 1.86334 1.22273 0.84240 0.86985 1.01317 1.24359 0.97756 0.97764 0.80719 0.87013 1.24161 0.96806 0.98846 0.99261 1.23116 0.96490 0.86280 0.90734 0.87575 1.23327 0.79818 0.98931 1.02320 1.49216 1.09457 1.59689 1.15475 1.19961 0.86100 0.77439 0.84751 1.90671 1.15321 1.57073 1.80650 1.21601 0.98991 1.02974 0.93650 1.20032 0.97332 1.03730 0.85745 1.22461 0.99654 0.89474 0.88201 1.22240 1.07316 0.98511 0.95051 1.19982 1.03519 0.94563 0.94766 1.20287 0.97368 0.98635 0.92902 1.20770 1.02128 0.96767 0.95925 1.20912 0.98411 0.92966 0.99401 1.19984 1.02191 1.01091 0.89097 1.19665 0.99050 0.90964 0.90076 1.84001 1.66173 1.40241 1.18723 0.93507 0.93283 0.92377 0.89783 0.91665 0.92755 0.91064 0.88546 0.88750 0.87557 0.88702 0.82394 0.85603 0.85459 0.84872 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.57 55.49 0.59 -26.07 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.12 10.38 -15.06 -0.16 -6.28 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.20 3.07 -154.63 -0.47 -14.67 16 10 C 0.18 4.17 4.88 -0.50 0.00 4.17 16 11 C 0.10 1.83 5.18 -62.56 -0.32 1.50 16 12 H 0.11 2.06 8.06 -51.93 -0.42 1.64 16 13 C -0.15 -2.48 6.82 -22.28 -0.15 -2.64 16 14 C 0.14 2.57 5.52 -62.55 -0.35 2.23 16 15 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 16 C 0.08 1.34 6.01 -1.69 -0.01 1.33 16 17 N -0.61 -10.75 2.94 -156.82 -0.46 -11.21 16 18 C 0.53 9.09 7.90 -10.98 -0.09 9.00 16 19 O -0.56 -11.16 16.33 5.56 0.09 -11.07 16 20 C -0.13 -1.73 4.97 -27.88 -0.14 -1.87 16 21 C -0.03 -0.38 5.01 -27.89 -0.14 -0.52 16 22 C 0.05 0.61 6.49 -35.80 -0.23 0.38 16 23 C -0.21 -2.38 11.01 -37.62 -0.41 -2.79 16 24 C -0.13 -1.49 6.40 -105.16 -0.67 -2.17 16 25 C -0.07 -0.69 10.05 -39.69 -0.40 -1.09 16 26 C -0.14 -1.11 9.98 -39.93 -0.40 -1.51 16 27 C -0.10 -0.81 10.01 -39.54 -0.40 -1.20 16 28 C -0.11 -1.07 10.07 -39.47 -0.40 -1.47 16 29 C 0.05 0.63 7.42 -38.47 -0.29 0.34 16 30 O -0.19 -2.63 10.58 3.91 0.04 -2.59 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.05 1.34 7.73 -51.93 -0.40 0.94 16 33 H 0.06 1.51 7.47 -51.93 -0.39 1.13 16 34 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.11 1.18 8.10 -51.93 -0.42 0.76 16 41 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -32.52 380.80 -10.82 -43.33 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.67 Total: 2.79 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -4.65 Total: -2.83 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.35 Total: -51.96 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.13 Total: -13.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.52 -10.82 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032509222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.141 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds