Wall clock time and date at job start Tue Mar 31 2020 22:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 119.99734 * 2 1 4 4 H 1.48501 * 109.47471 * 270.00034 * 3 2 1 5 5 H 1.48496 * 109.47287 * 30.00200 * 3 2 1 6 6 H 1.48504 * 109.47052 * 150.00215 * 3 2 1 7 7 C 1.38817 * 120.00490 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99893 * 196.90783 * 7 2 1 9 9 N 1.36944 * 119.99694 * 16.89840 * 7 2 1 10 10 C 1.47151 * 120.97716 * 206.25282 * 9 7 2 11 11 C 1.53297 * 108.38182 * 230.51482 * 10 9 7 12 12 O 1.42961 * 109.26551 * 307.72477 * 11 10 9 13 13 C 1.42966 * 114.16735 * 62.49897 * 12 11 10 14 14 H 1.08997 * 109.51238 * 57.45512 * 13 12 11 15 15 C 1.52996 * 109.51004 * 177.55155 * 13 12 11 16 16 N 1.46500 * 109.47335 * 299.89608 * 15 13 12 17 17 C 1.34776 * 120.00375 * 179.97438 * 16 15 13 18 18 O 1.21568 * 119.99580 * 0.02562 * 17 16 15 19 19 C 1.47777 * 120.00540 * 180.02562 * 17 16 15 20 20 C 1.40653 * 119.74100 * 359.97438 * 19 17 16 21 21 C 1.35725 * 120.84444 * 180.02562 * 20 19 17 22 22 C 1.40707 * 120.01960 * 359.97438 * 21 20 19 23 23 C 1.40481 * 121.04849 * 180.02562 * 22 21 20 24 24 C 1.36133 * 119.72268 * 179.97438 * 23 22 21 25 25 C 1.39363 * 121.01438 * 0.27491 * 24 23 22 26 26 C 1.36095 * 120.95000 * 359.43442 * 25 24 23 27 27 C 1.40654 * 119.65819 * 0.56034 * 26 25 24 28 28 C 1.38483 * 119.74843 * 180.02562 * 19 17 16 29 29 C 1.47149 * 120.98048 * 26.23699 * 9 7 2 30 30 H 0.96993 * 120.00923 * 359.97438 * 1 2 3 31 31 H 1.08991 * 109.68693 * 350.23852 * 10 9 7 32 32 H 1.08997 * 109.68184 * 110.76092 * 10 9 7 33 33 H 1.09000 * 109.51217 * 67.62308 * 11 10 9 34 34 H 1.08993 * 109.51424 * 187.77941 * 11 10 9 35 35 H 1.09003 * 109.47402 * 179.89861 * 15 13 12 36 36 H 1.09003 * 109.47309 * 59.89712 * 15 13 12 37 37 H 0.97006 * 120.00058 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.58250 * 0.02562 * 20 19 17 39 39 H 1.08000 * 119.98973 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.13611 * 359.97438 * 23 22 21 41 41 H 1.08004 * 119.49478 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.52797 * 179.72478 * 25 24 23 43 43 H 1.07996 * 120.17108 * 180.28187 * 26 25 24 44 44 H 1.07996 * 120.27572 * 359.96012 * 28 19 17 45 45 H 1.08996 * 109.68553 * 9.75134 * 29 9 7 46 46 H 1.09003 * 109.70780 * 249.22440 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2715 9 7 1.3700 -2.3624 -0.3458 10 6 1.8341 -3.6634 0.1614 11 6 1.9812 -4.6208 -1.0268 12 8 0.7654 -4.6296 -1.7788 13 6 0.4242 -3.3664 -2.3546 14 1 1.2368 -3.0277 -2.9972 15 6 -0.8550 -3.5106 -3.1816 16 7 -0.6379 -4.4888 -4.2503 17 6 -1.6344 -4.7803 -5.1097 18 8 -2.7132 -4.2311 -4.9982 19 6 -1.4156 -5.7675 -6.1873 20 6 -0.1652 -6.3993 -6.3116 21 6 0.0604 -7.3090 -7.2933 22 6 -0.9635 -7.6314 -8.2030 23 6 -0.7538 -8.5702 -9.2269 24 6 -1.7636 -8.8622 -10.0920 25 6 -3.0055 -8.2393 -9.9826 26 6 -3.2479 -7.3291 -9.0003 27 6 -2.2288 -7.0017 -8.0879 28 6 -2.4430 -6.0627 -7.0677 29 6 0.1973 -2.3447 -1.2346 30 1 -0.4851 0.8399 0.0004 31 1 2.7975 -3.5420 0.6564 32 1 1.1063 -4.0630 0.8675 33 1 2.8002 -4.2871 -1.6640 34 1 2.1901 -5.6260 -0.6607 35 1 -1.1156 -2.5467 -3.6188 36 1 -1.6672 -3.8493 -2.5384 37 1 0.2228 -4.9273 -4.3389 38 1 0.6257 -6.1576 -5.6170 39 1 1.0260 -7.7855 -7.3762 40 1 0.2045 -9.0581 -9.3273 41 1 -1.5985 -9.5848 -10.8775 42 1 -3.7882 -8.4858 -10.6847 43 1 -4.2164 -6.8573 -8.9245 44 1 -3.4016 -5.5751 -6.9690 45 1 0.0768 -1.3501 -1.6637 46 1 -0.6960 -2.6114 -0.6698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035586225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:57 Heat of formation + Delta-G solvation = -31.344945 kcal Electronic energy + Delta-G solvation = -28262.196490 eV Core-core repulsion = 24309.350838 eV Total energy + Delta-G solvation = -3952.845652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.62589 -40.62241 -39.91442 -37.17362 -36.50681 -35.92114 -33.69444 -33.28072 -32.76265 -31.29901 -30.19755 -29.09023 -27.43500 -25.25880 -24.83224 -24.16262 -23.24331 -22.83425 -21.94934 -21.32016 -19.23331 -18.90185 -18.23935 -17.70616 -17.48229 -17.15978 -16.77755 -16.33588 -16.14734 -16.01808 -15.65926 -15.54651 -15.29033 -15.04526 -14.69835 -14.63768 -14.51117 -14.47530 -14.22266 -14.03199 -13.77952 -13.20154 -13.01732 -12.90778 -12.69196 -12.54100 -12.24407 -12.19948 -12.17474 -12.09442 -11.89581 -11.77955 -11.34932 -11.13534 -10.98467 -10.80224 -10.56691 -10.25079 -9.62501 -8.88827 -8.77080 -7.92277 -5.40015 -0.63308 -0.15116 0.97813 1.45957 1.47343 1.51622 1.56365 2.01667 2.31818 2.47017 2.76738 3.14438 3.22203 3.47549 3.59075 3.64439 3.85144 4.00066 4.02429 4.04624 4.11962 4.20459 4.25038 4.33294 4.42224 4.44056 4.48868 4.52255 4.58199 4.66852 4.79907 4.82609 4.92772 4.95660 5.06269 5.10044 5.15581 5.22023 5.24808 5.26434 5.34068 5.51377 5.57683 5.59183 5.59542 5.80241 6.02693 6.24879 6.31215 6.45416 7.04085 7.10146 7.73221 8.26842 9.13576 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.002082 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.845560 B =13447.892743 C =13973.351560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.265 4.265 8 H 0.075 0.925 9 N -0.614 5.614 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.390 6.390 13 C 0.077 3.923 14 H 0.067 0.933 15 C 0.142 3.858 16 N -0.701 5.701 17 C 0.551 3.449 18 O -0.585 6.585 19 C -0.146 4.146 20 C -0.099 4.099 21 C -0.102 4.102 22 C -0.051 4.051 23 C -0.116 4.116 24 C -0.108 4.108 25 C -0.118 4.118 26 C -0.114 4.114 27 C -0.081 4.081 28 C -0.048 4.048 29 C 0.159 3.841 30 H 0.251 0.749 31 H 0.073 0.927 32 H 0.015 0.985 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.067 0.933 46 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 -20.480 -21.146 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.395 4.395 8 H 0.093 0.907 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.021 4.021 12 O -0.309 6.309 13 C 0.018 3.982 14 H 0.085 0.915 15 C 0.018 3.982 16 N -0.353 5.353 17 C 0.341 3.659 18 O -0.467 6.467 19 C -0.149 4.149 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.051 4.051 23 C -0.134 4.134 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.132 4.132 27 C -0.081 4.081 28 C -0.067 4.067 29 C 0.032 3.968 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.253 0.747 38 H 0.162 0.838 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.085 0.915 46 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 0.412 -20.104 -21.013 29.084 hybrid contribution 0.293 1.552 0.787 1.765 sum 0.705 -18.552 -20.226 27.455 Atomic orbital electron populations 1.70177 1.06775 1.26098 1.55144 1.25867 0.96090 1.01760 1.01061 0.85209 0.78077 0.79163 0.77650 1.21014 1.22410 1.19011 1.19567 0.93076 0.85500 1.41320 0.90687 1.44345 1.33642 1.02451 1.53362 1.21838 0.98579 0.86459 0.95558 1.23098 0.85798 1.00740 0.92424 1.87797 1.43168 1.30502 1.69428 1.22742 0.95738 0.85545 0.94218 0.91533 1.21148 0.96560 0.92700 0.87822 1.45693 1.16104 1.43434 1.30062 1.18735 0.83451 0.81863 0.81899 1.90748 1.26661 1.54617 1.74646 1.19794 0.96901 1.00477 0.97725 1.21078 0.95214 0.96248 0.99158 1.21282 0.99739 0.97343 0.93613 1.18566 0.93043 0.96800 0.96694 1.21403 1.01092 0.96886 0.93972 1.21353 0.92710 0.99275 0.99218 1.21258 0.98359 0.95931 0.98074 1.21337 0.98602 0.98548 0.94709 1.18254 0.95239 0.97809 0.96773 1.21545 0.98483 0.94600 0.92116 1.21079 0.88326 0.97513 0.89868 0.93960 0.90829 0.96745 0.92555 0.86010 0.90514 0.92234 0.74727 0.83759 0.81742 0.82671 0.82885 0.83313 0.84445 0.85145 0.91456 0.98243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.54 11.14 21.65 0.24 -55.30 16 2 C -0.05 -2.90 4.95 84.86 0.42 -2.48 16 3 Si 0.97 44.37 29.59 68.60 2.03 46.40 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.26 -14.30 9.65 84.03 0.81 -13.49 16 8 H 0.08 3.88 7.88 -2.91 -0.02 3.85 16 9 N -0.61 -30.57 3.05 -697.57 -2.13 -32.70 16 10 C 0.10 4.04 6.74 86.35 0.58 4.63 16 11 C 0.06 1.78 6.98 72.08 0.50 2.28 16 12 O -0.39 -13.60 10.14 -148.98 -1.51 -15.11 16 13 C 0.08 2.89 2.86 30.69 0.09 2.98 16 14 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 15 C 0.14 5.04 5.37 86.38 0.46 5.50 16 16 N -0.70 -20.71 5.40 -466.03 -2.52 -23.23 16 17 C 0.55 17.69 7.77 86.77 0.67 18.36 16 18 O -0.58 -23.38 16.30 -3.93 -0.06 -23.45 16 19 C -0.15 -3.75 5.87 -20.11 -0.12 -3.87 16 20 C -0.10 -1.89 9.44 22.28 0.21 -1.68 16 21 C -0.10 -1.58 9.73 22.29 0.22 -1.37 16 22 C -0.05 -0.88 5.75 -21.25 -0.12 -1.00 16 23 C -0.12 -1.38 9.76 22.33 0.22 -1.16 16 24 C -0.11 -1.10 9.95 22.05 0.22 -0.88 16 25 C -0.12 -1.40 9.95 22.04 0.22 -1.18 16 26 C -0.11 -1.86 9.77 22.36 0.22 -1.64 16 27 C -0.08 -1.66 5.74 -21.31 -0.12 -1.78 16 28 C -0.05 -1.19 9.34 22.83 0.21 -0.98 16 29 C 0.16 7.71 4.73 86.35 0.41 8.12 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.41 9.90 6.33 -92.70 -0.59 9.31 16 38 H 0.14 2.16 6.34 -2.91 -0.02 2.14 16 39 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 43 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 44 H 0.13 3.37 7.61 -2.91 -0.02 3.35 16 45 H 0.07 3.65 6.14 -2.39 -0.01 3.63 16 46 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -73.46 379.12 1.57 -71.89 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.41 Total: 21.13 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.10 Total: 10.37 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -4.40 Total: -111.22 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.57 Total: -38.56 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -73.46 1.57 -71.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035586225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.543 kcal (2) G-P(sol) polarization free energy of solvation -73.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds