Wall clock time and date at job start Tue Mar 31 2020 22:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99903 * 2 1 4 4 H 1.48496 * 109.46992 * 274.98817 * 3 2 1 5 5 H 1.48499 * 109.47337 * 34.99409 * 3 2 1 6 6 H 1.48510 * 109.47182 * 154.99266 * 3 2 1 7 7 C 1.38811 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00082 * 174.95746 * 7 2 1 9 9 N 1.36935 * 120.00317 * 354.96937 * 7 2 1 10 10 C 1.47666 * 134.45922 * 185.71978 * 9 7 2 11 11 C 1.53516 * 85.97903 * 204.27374 * 10 9 7 12 12 C 1.47670 * 134.45462 * 5.66716 * 9 7 2 13 13 C 1.52670 * 113.56952 * 91.01699 * 11 10 9 14 14 C 1.53338 * 109.11289 * 73.80875 * 13 11 10 15 15 N 1.46884 * 108.75883 * 52.40347 * 14 13 11 16 16 C 1.34774 * 120.46313 * 124.47611 * 15 14 13 17 17 O 1.21647 * 120.00051 * 4.24440 * 16 15 14 18 18 C 1.47091 * 120.00074 * 184.24611 * 16 15 14 19 19 C 1.36048 * 127.13891 * 309.92084 * 18 16 15 20 20 O 1.33802 * 109.84793 * 179.72963 * 19 18 16 21 21 C 1.34908 * 111.35386 * 0.24219 * 20 19 18 22 22 C 1.38965 * 133.11937 * 180.02562 * 21 20 19 23 23 C 1.37841 * 119.97341 * 179.97438 * 22 21 20 24 24 C 1.38680 * 120.65578 * 0.02562 * 23 22 21 25 25 C 1.37847 * 120.20165 * 0.02562 * 24 23 22 26 26 C 1.39107 * 119.62551 * 359.95959 * 25 24 23 27 27 C 1.46888 * 119.07081 * 304.74685 * 15 14 13 28 28 C 1.52670 * 113.56034 * 222.23312 * 11 10 9 29 29 H 0.96997 * 119.99944 * 0.02562 * 1 2 3 30 30 H 1.08998 * 113.79278 * 90.01032 * 10 9 7 31 31 H 1.08997 * 113.79234 * 318.54288 * 10 9 7 32 32 H 1.09000 * 113.79327 * 41.44598 * 12 9 7 33 33 H 1.09004 * 113.78814 * 269.98624 * 12 9 7 34 34 H 1.09002 * 109.53572 * 313.91925 * 13 11 10 35 35 H 1.09000 * 109.53236 * 193.69983 * 13 11 10 36 36 H 1.08993 * 109.58891 * 292.62576 * 14 13 11 37 37 H 1.08993 * 109.58958 * 172.18754 * 14 13 11 38 38 H 1.07995 * 125.07536 * 359.97438 * 19 18 16 39 39 H 1.08000 * 120.01637 * 359.95648 * 22 21 20 40 40 H 1.08003 * 119.67121 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.90266 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.18252 * 179.97438 * 25 24 23 43 43 H 1.08995 * 109.58925 * 175.04410 * 27 15 14 44 44 H 1.09002 * 109.58315 * 295.47440 * 27 15 14 45 45 H 1.08995 * 109.53034 * 46.08784 * 28 11 10 46 46 H 1.09005 * 109.52679 * 166.23186 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1072 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5966 1.4120 0.5919 7 6 2.0102 -1.2021 0.0005 8 1 3.0872 -1.2040 -0.0817 9 7 1.3296 -2.3857 0.1051 10 6 1.7300 -3.8004 0.2429 11 6 0.3638 -4.1346 -0.3725 12 6 -0.0990 -2.7588 0.1261 13 6 0.3929 -4.2558 -1.8941 14 6 1.0791 -5.5717 -2.2799 15 7 0.4309 -6.6727 -1.5553 16 6 -0.0802 -7.7244 -2.2255 17 8 0.0613 -7.8044 -3.4311 18 6 -0.8091 -8.7755 -1.4992 19 6 -0.3992 -9.4390 -0.3845 20 8 -1.3344 -10.3197 -0.0103 21 6 -2.3950 -10.2938 -0.8437 22 6 -3.5914 -10.9998 -0.8806 23 6 -4.5079 -10.7498 -1.8794 24 6 -4.2496 -9.7976 -2.8540 25 6 -3.0679 -9.0881 -2.8344 26 6 -2.1360 -9.3320 -1.8308 27 6 0.3421 -6.6086 -0.0905 28 6 -0.3436 -5.3026 0.3102 29 1 -0.4850 0.8400 -0.0004 30 1 1.8385 -4.1280 1.2768 31 1 2.5756 -4.0812 -0.3849 32 1 -0.7071 -2.2117 -0.5944 33 1 -0.5341 -2.7768 1.1254 34 1 0.9480 -3.4180 -2.3159 35 1 -0.6266 -4.2498 -2.2797 36 1 2.1339 -5.5269 -2.0089 37 1 0.9820 -5.7334 -3.3534 38 1 0.5391 -9.2761 0.1248 39 1 -3.8030 -11.7442 -0.1273 40 1 -5.4360 -11.3017 -1.9037 41 1 -4.9761 -9.6119 -3.6312 42 1 -2.8669 -8.3469 -3.5938 43 1 -0.2402 -7.4532 0.2776 44 1 1.3440 -6.6383 0.3378 45 1 -0.2910 -5.1786 1.3918 46 1 -1.3873 -5.3298 -0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035863179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:48 Heat of formation + Delta-G solvation = 40.292439 kcal Electronic energy + Delta-G solvation = -29463.827929 eV Core-core repulsion = 25514.088707 eV Total energy + Delta-G solvation = -3949.739222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.63664 -41.51347 -40.01138 -38.84107 -37.10759 -34.54818 -34.05175 -32.24648 -32.05681 -31.37442 -30.30634 -28.69454 -26.77808 -25.75660 -24.70309 -24.43421 -23.59538 -23.22091 -22.49974 -20.65359 -19.25534 -18.69388 -18.56253 -18.15874 -17.53278 -17.07024 -16.97710 -16.81420 -16.30094 -16.15184 -16.06026 -15.62011 -15.19856 -15.05567 -14.87844 -14.58658 -14.52759 -14.06977 -13.81835 -13.66556 -13.57075 -13.28936 -13.11025 -12.94220 -12.85700 -12.81812 -12.65284 -12.19907 -12.18010 -11.97786 -11.69260 -11.57064 -11.34433 -11.26589 -11.03274 -10.85396 -10.81970 -9.70419 -9.66408 -9.22496 -8.85870 -7.89795 -5.20666 -0.19400 0.30958 0.82246 1.44363 1.45351 1.54450 1.56982 1.69822 2.07467 2.48200 2.72191 3.30451 3.33154 3.42266 3.43552 3.60830 3.83268 3.90136 3.92562 4.04401 4.13090 4.18300 4.28506 4.32781 4.39751 4.41362 4.53198 4.57989 4.66536 4.74707 4.77085 4.78913 4.90469 4.93306 5.03214 5.10968 5.12790 5.19805 5.20923 5.29566 5.32763 5.36218 5.47470 5.50371 5.59141 5.59752 5.73981 5.96960 6.05600 6.32750 6.94333 7.03006 7.63920 8.61456 9.27636 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.002461 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.475989 B =11373.269993 C =11476.451717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.639 5.639 10 C 0.132 3.868 11 C -0.083 4.083 12 C 0.170 3.830 13 C -0.090 4.090 14 C 0.126 3.874 15 N -0.594 5.594 16 C 0.589 3.411 17 O -0.582 6.582 18 C -0.254 4.254 19 C 0.085 3.915 20 O -0.181 6.181 21 C 0.031 3.969 22 C -0.102 4.102 23 C -0.090 4.090 24 C -0.126 4.126 25 C -0.098 4.098 26 C -0.121 4.121 27 C 0.103 3.897 28 C -0.112 4.112 29 H 0.246 0.754 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.017 0.983 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.260 0.740 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.153 0.847 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.072 -26.176 1.204 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.801 3.199 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.357 4.357 8 H 0.101 0.899 9 N -0.366 5.366 10 C 0.007 3.993 11 C -0.084 4.084 12 C 0.045 3.955 13 C -0.128 4.128 14 C 0.004 3.996 15 N -0.325 5.325 16 C 0.378 3.622 17 O -0.463 6.463 18 C -0.259 4.259 19 C 0.017 3.983 20 O -0.081 6.081 21 C -0.016 4.016 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.144 4.144 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.018 4.018 28 C -0.151 4.151 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.276 0.724 39 H 0.180 0.820 40 H 0.191 0.809 41 H 0.171 0.829 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.919 -26.052 0.797 26.727 hybrid contribution 0.375 2.096 -0.334 2.155 sum -5.544 -23.956 0.462 24.594 Atomic orbital electron populations 1.70027 1.06454 1.25349 1.58451 1.25597 0.96466 1.00760 1.03421 0.85147 0.77923 0.79631 0.77182 1.21656 1.22275 1.19192 1.19399 0.91181 0.83612 1.41471 0.89928 1.46302 1.03432 1.01834 1.84990 1.22780 0.95418 0.83202 0.97867 1.22113 0.96864 0.94458 0.94968 1.22109 0.86973 0.90342 0.96106 1.21363 1.00170 0.96765 0.94509 1.21523 0.96748 0.84214 0.97156 1.48051 1.56585 1.19313 1.08582 1.17485 0.77386 0.81354 0.85947 1.90761 1.60792 1.78723 1.16009 1.20836 0.98046 1.05170 1.01806 1.25127 0.93714 0.86744 0.92666 1.83872 1.24370 1.52359 1.47461 1.19885 0.90917 0.99852 0.90900 1.20415 0.89220 1.00783 1.01633 1.21404 0.99759 0.97109 0.92469 1.21433 0.96290 0.96301 1.00346 1.20690 0.93814 1.00174 0.96980 1.19702 0.94673 0.99165 0.98733 1.22113 1.03165 0.98741 0.77824 1.21688 0.99073 0.93145 1.01204 0.94510 0.92912 0.92834 0.95428 0.96568 0.92268 0.93158 0.89614 0.90334 0.72417 0.82036 0.80908 0.82935 0.87103 0.87550 0.88030 0.88942 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.37 11.49 21.65 0.25 -58.12 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.97 46.21 29.56 68.60 2.03 48.24 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.23 -12.72 10.69 84.03 0.90 -11.83 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.64 -31.98 3.53 -722.59 -2.55 -34.53 16 10 C 0.13 4.82 7.72 86.32 0.67 5.49 16 11 C -0.08 -2.83 0.77 -52.03 -0.04 -2.87 16 12 C 0.17 7.98 6.57 86.31 0.57 8.55 16 13 C -0.09 -3.09 5.21 30.60 0.16 -2.93 16 14 C 0.13 3.60 6.29 86.42 0.54 4.15 16 15 N -0.59 -15.09 2.95 -823.75 -2.43 -17.51 16 16 C 0.59 17.02 7.60 86.57 0.66 17.68 16 17 O -0.58 -21.57 16.51 -4.18 -0.07 -21.64 16 18 C -0.25 -6.05 5.34 -18.97 -0.10 -6.15 16 19 C 0.09 1.33 9.65 67.31 0.65 1.98 16 20 O -0.18 -3.20 10.53 -3.78 -0.04 -3.24 16 21 C 0.03 0.62 7.39 22.93 0.17 0.79 16 22 C -0.10 -1.46 10.06 22.35 0.22 -1.24 16 23 C -0.09 -1.10 10.01 22.28 0.22 -0.88 16 24 C -0.13 -2.06 10.04 22.28 0.22 -1.84 16 25 C -0.10 -2.33 10.09 22.39 0.23 -2.11 16 26 C -0.12 -3.00 6.39 -20.10 -0.13 -3.13 16 27 C 0.10 1.96 5.77 86.26 0.50 2.46 16 28 C -0.11 -2.84 5.24 30.44 0.16 -2.68 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.05 1.76 8.07 -2.39 -0.02 1.74 16 31 H 0.05 1.83 7.41 -2.39 -0.02 1.82 16 32 H 0.03 1.50 7.28 -2.39 -0.02 1.48 16 33 H 0.02 0.79 8.09 -2.38 -0.02 0.77 16 34 H 0.06 2.38 8.01 -2.39 -0.02 2.36 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.22 7.49 -2.39 -0.02 2.20 16 37 H 0.08 2.46 6.99 -2.39 -0.02 2.44 16 38 H 0.26 1.54 7.54 -2.91 -0.02 1.51 16 39 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 40 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.11 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.11 1.54 4.48 -2.39 -0.01 1.53 16 44 H 0.10 1.48 8.07 -2.39 -0.02 1.46 16 45 H 0.09 2.11 8.12 -2.39 -0.02 2.09 16 46 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -79.05 372.45 4.25 -74.80 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.00 Total: 10.10 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 6.06 Total: 1.91 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.73 Total: -110.16 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.11 Total: -24.89 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -79.05 4.25 -74.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035863179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.096 kcal (2) G-P(sol) polarization free energy of solvation -79.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds