Wall clock time and date at job start Tue Mar 31 2020 22:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48501 * 109.47043 * 239.99778 * 3 2 1 5 5 H 1.48493 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47233 * 120.00218 * 3 2 1 7 7 C 1.38816 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99663 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00453 * 359.97438 * 7 2 1 10 10 C 1.46770 * 125.34224 * 180.02562 * 9 7 2 11 11 C 1.53964 * 106.62892 * 161.48403 * 10 9 7 12 12 H 1.09007 * 113.01468 * 265.71746 * 11 10 9 13 13 C 1.54106 * 109.46024 * 138.17563 * 11 10 9 14 14 N 1.46747 * 106.62584 * 278.65644 * 13 11 10 15 15 C 1.34784 * 125.32642 * 161.56296 * 14 13 11 16 16 O 1.21283 * 119.99649 * 179.69173 * 15 14 13 17 17 C 1.50697 * 119.99774 * 359.42069 * 15 14 13 18 18 C 1.50700 * 109.46617 * 180.02562 * 17 15 14 19 19 C 1.33994 * 124.92717 * 89.99906 * 18 17 15 20 20 C 1.46784 * 106.18898 * 179.97438 * 19 18 17 21 21 C 1.39407 * 134.37533 * 180.02562 * 20 19 18 22 22 C 1.36739 * 119.71659 * 179.97438 * 21 20 19 23 23 C 1.38744 * 120.41629 * 0.02562 * 22 21 20 24 24 C 1.37844 * 120.68858 * 359.97438 * 23 22 21 25 25 C 1.38937 * 119.81559 * 359.97438 * 24 23 22 26 26 O 1.34454 * 124.92123 * 269.68930 * 18 17 15 27 27 C 1.46641 * 109.34328 * 341.29787 * 14 13 11 28 28 C 1.53688 * 108.00477 * 1.07993 * 27 14 13 29 29 H 1.09002 * 112.55775 * 254.08616 * 28 27 14 30 30 C 1.46675 * 125.33244 * 0.02562 * 9 7 2 31 31 H 0.97004 * 119.99425 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.02877 * 42.18991 * 10 9 7 33 33 H 1.09001 * 110.02555 * 280.77401 * 10 9 7 34 34 H 1.08994 * 110.15260 * 159.31679 * 13 11 10 35 35 H 1.08997 * 109.95484 * 37.88526 * 13 11 10 36 36 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 37 37 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 38 38 H 1.08003 * 126.90799 * 359.95570 * 19 18 17 39 39 H 1.07995 * 120.14369 * 359.96002 * 21 20 19 40 40 H 1.07994 * 119.78857 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.65369 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.09312 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.76055 * 120.72144 * 27 14 13 44 44 H 1.09001 * 109.75492 * 241.44185 * 27 14 13 45 45 H 1.08995 * 109.77024 * 60.92909 * 30 9 7 46 46 H 1.08993 * 109.77168 * 300.16550 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9378 -3.7220 -0.0005 11 6 0.8503 -4.7060 0.4680 12 1 0.8865 -4.9026 1.5395 13 6 0.9079 -5.9829 -0.3930 14 7 0.1868 -5.6842 -1.6357 15 6 0.2935 -6.3799 -2.7852 16 8 -0.3543 -6.0500 -3.7560 17 6 1.2223 -7.5639 -2.8658 18 6 1.1566 -8.1605 -4.2481 19 6 1.9382 -7.8027 -5.2760 20 6 1.5283 -8.6373 -6.4118 21 6 1.9423 -8.7505 -7.7381 22 6 1.3348 -9.6563 -8.5629 23 6 0.3098 -10.4618 -8.0879 24 6 -0.1130 -10.3640 -6.7796 25 6 0.4916 -9.4509 -5.9246 26 8 0.3092 -9.1331 -4.6272 27 6 -0.6728 -4.5143 -1.4293 28 6 -0.4704 -4.0246 0.0134 29 1 -1.3139 -4.2675 0.6596 30 6 -0.1349 -2.5245 -0.0005 31 1 -0.4849 0.8401 -0.0004 32 1 2.7832 -3.7447 0.6872 33 1 2.2676 -3.9814 -1.0066 34 1 0.4257 -6.8095 0.1286 35 1 1.9447 -6.2354 -0.6150 36 1 2.2423 -7.2403 -2.6583 37 1 0.9220 -8.3119 -2.1322 38 1 2.7138 -7.0511 -5.2702 39 1 2.7392 -8.1253 -8.1127 40 1 1.6549 -9.7452 -9.5905 41 1 -0.1616 -11.1727 -8.7502 42 1 -0.9119 -10.9955 -6.4201 43 1 -0.3957 -3.7254 -2.1285 44 1 -1.7158 -4.7920 -1.5813 45 1 -0.5483 -2.0625 -0.8970 46 1 -0.5499 -2.0455 0.8862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048971100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:22 Heat of formation + Delta-G solvation = 31.133027 kcal Electronic energy + Delta-G solvation = -28762.221938 eV Core-core repulsion = 24812.085534 eV Total energy + Delta-G solvation = -3950.136404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.60145 -40.26754 -38.39378 -37.92403 -35.03478 -33.48320 -32.35918 -31.61690 -30.58765 -30.20101 -29.69131 -27.71617 -25.55199 -25.37875 -23.33780 -22.89290 -21.99636 -21.27298 -20.23302 -19.44620 -19.30061 -17.52625 -17.40242 -17.02234 -16.66002 -16.16713 -16.04623 -15.60472 -14.91563 -14.77806 -14.65893 -14.27687 -13.86252 -13.71612 -13.39460 -13.24351 -13.23725 -12.91075 -12.67010 -12.43564 -12.31187 -12.12985 -11.91806 -11.83295 -11.74442 -11.47505 -11.11416 -10.94347 -10.81648 -10.41161 -10.29564 -10.17199 -10.05070 -9.96007 -9.79141 -9.69950 -8.78935 -8.64475 -8.44196 -8.29392 -6.87268 -5.75425 -3.09176 0.71910 1.19094 2.13286 2.48903 2.66745 3.18055 3.38732 3.43205 3.44477 3.54688 4.12401 4.45532 4.46722 4.50849 4.70539 4.72130 4.84151 4.92074 4.93195 5.02673 5.06355 5.16669 5.21123 5.28023 5.41983 5.49229 5.54843 5.55964 5.65138 5.67772 5.73377 5.89148 6.02564 6.06117 6.08052 6.22825 6.23501 6.27616 6.29708 6.46566 6.48281 6.56522 6.64593 6.78046 7.03941 7.49700 7.52357 7.63008 7.77150 8.20768 8.22968 9.18699 9.79140 10.42584 11.36153 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002258 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.307663 B =12397.162521 C =13093.110093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.144 3.856 11 C -0.110 4.110 12 H 0.100 0.900 13 C 0.107 3.893 14 N -0.607 5.607 15 C 0.526 3.474 16 O -0.532 6.532 17 C -0.064 4.064 18 C 0.059 3.941 19 C -0.192 4.192 20 C -0.126 4.126 21 C -0.071 4.071 22 C -0.139 4.139 23 C -0.098 4.098 24 C -0.107 4.107 25 C 0.056 3.944 26 O -0.189 6.189 27 C 0.119 3.881 28 C -0.123 4.123 29 H 0.089 0.911 30 C 0.187 3.813 31 H 0.254 0.746 32 H 0.035 0.965 33 H 0.017 0.983 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.158 0.842 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -22.162 -7.946 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.118 0.882 13 C -0.017 4.017 14 N -0.341 5.341 15 C 0.314 3.686 16 O -0.409 6.409 17 C -0.103 4.103 18 C 0.011 3.989 19 C -0.211 4.211 20 C -0.127 4.127 21 C -0.089 4.089 22 C -0.157 4.157 23 C -0.116 4.116 24 C -0.126 4.126 25 C 0.008 3.992 26 O -0.091 6.091 27 C -0.002 4.002 28 C -0.142 4.142 29 H 0.107 0.893 30 C 0.062 3.938 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.176 0.824 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.725 -21.896 -8.373 23.506 hybrid contribution 0.519 1.041 0.019 1.163 sum 2.244 -20.855 -8.354 22.578 Atomic orbital electron populations 1.69937 1.04878 1.25284 1.56836 1.24808 0.95748 0.97745 1.02037 0.86180 0.78457 0.83110 0.77892 1.21167 1.21569 1.21138 1.18985 0.90408 0.82324 1.44187 0.90467 1.44207 1.01449 0.99957 1.87240 1.21244 0.93848 0.85904 0.97194 1.22968 0.97221 0.93569 0.99175 0.88179 1.22051 0.96566 0.98068 0.84967 1.48230 1.44315 1.30577 1.10942 1.19814 0.83278 0.83634 0.81893 1.90762 1.46120 1.68749 1.35247 1.20236 1.02452 0.96351 0.91300 1.21396 0.90811 0.90470 0.96183 1.22201 1.04627 1.03389 0.90909 1.19945 0.98587 0.98801 0.95351 1.20309 0.99449 0.97994 0.91123 1.20759 0.97679 0.97238 1.00042 1.20898 0.97143 0.99457 0.94092 1.19936 1.01603 0.98835 0.92187 1.19606 0.97948 0.98949 0.82685 1.83916 1.52742 1.47579 1.24816 1.21999 0.93526 0.87026 0.97698 1.23149 0.97048 1.00129 0.93920 0.89281 1.21044 0.84603 0.86556 1.01627 0.93597 0.94643 0.96565 0.91558 0.90774 0.85391 0.86766 0.82389 0.85511 0.85433 0.84892 0.85136 0.90535 0.92138 0.93259 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.25 55.49 0.57 -26.06 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.30 10.25 -15.06 -0.15 -6.45 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.60 -14.77 3.38 -171.84 -0.58 -15.35 16 10 C 0.14 2.76 6.49 -3.39 -0.02 2.74 16 11 C -0.11 -1.64 4.16 -88.26 -0.37 -2.01 16 12 H 0.10 1.33 8.14 -51.92 -0.42 0.91 16 13 C 0.11 1.26 5.77 -3.33 -0.02 1.24 16 14 N -0.61 -9.06 3.30 -172.27 -0.57 -9.63 16 15 C 0.53 8.11 7.83 -10.98 -0.09 8.02 16 16 O -0.53 -10.61 16.34 5.56 0.09 -10.52 16 17 C -0.06 -0.69 5.23 -29.04 -0.15 -0.85 16 18 C 0.06 0.79 5.72 -35.80 -0.20 0.58 16 19 C -0.19 -2.49 11.01 -37.62 -0.41 -2.91 16 20 C -0.13 -1.65 6.40 -105.16 -0.67 -2.32 16 21 C -0.07 -0.75 10.05 -39.69 -0.40 -1.15 16 22 C -0.14 -1.23 9.98 -39.94 -0.40 -1.63 16 23 C -0.10 -0.85 10.01 -39.54 -0.40 -1.24 16 24 C -0.11 -1.13 10.07 -39.47 -0.40 -1.53 16 25 C 0.06 0.75 7.42 -38.47 -0.29 0.46 16 26 O -0.19 -2.72 10.58 3.89 0.04 -2.68 16 27 C 0.12 2.06 6.21 -3.61 -0.02 2.04 16 28 C -0.12 -2.10 4.01 -88.60 -0.36 -2.46 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 C 0.19 4.31 4.77 -3.57 -0.02 4.29 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.72 7.43 -51.93 -0.39 0.34 16 36 H 0.13 1.03 7.88 -51.93 -0.41 0.63 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.08 1.58 7.29 -51.93 -0.38 1.20 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 1.29 6.73 -51.93 -0.35 0.94 16 46 H 0.05 1.26 7.37 -51.93 -0.38 0.87 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -34.63 375.32 -10.78 -45.41 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.50 Total: -0.26 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -4.46 Total: -3.45 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.58 Total: -51.05 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.13 Total: -13.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.63 -10.78 -45.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048971100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.545 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds