Wall clock time and date at job start Tue Mar 31 2020 22:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48501 * 109.47043 * 239.99778 * 3 2 1 5 5 H 1.48493 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47233 * 120.00218 * 3 2 1 7 7 C 1.38816 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99663 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00453 * 359.97438 * 7 2 1 10 10 C 1.46770 * 125.34224 * 180.02562 * 9 7 2 11 11 C 1.53964 * 106.62892 * 161.48403 * 10 9 7 12 12 H 1.09007 * 113.01468 * 265.71746 * 11 10 9 13 13 C 1.54106 * 109.46024 * 138.17563 * 11 10 9 14 14 N 1.46747 * 106.62584 * 278.65644 * 13 11 10 15 15 C 1.34784 * 125.32642 * 161.56296 * 14 13 11 16 16 O 1.21283 * 119.99649 * 179.69173 * 15 14 13 17 17 C 1.50697 * 119.99774 * 359.42069 * 15 14 13 18 18 C 1.50700 * 109.46617 * 180.02562 * 17 15 14 19 19 C 1.33994 * 124.92717 * 89.99906 * 18 17 15 20 20 C 1.46784 * 106.18898 * 179.97438 * 19 18 17 21 21 C 1.39407 * 134.37533 * 180.02562 * 20 19 18 22 22 C 1.36739 * 119.71659 * 179.97438 * 21 20 19 23 23 C 1.38744 * 120.41629 * 0.02562 * 22 21 20 24 24 C 1.37844 * 120.68858 * 359.97438 * 23 22 21 25 25 C 1.38937 * 119.81559 * 359.97438 * 24 23 22 26 26 O 1.34454 * 124.92123 * 269.68930 * 18 17 15 27 27 C 1.46641 * 109.34328 * 341.29787 * 14 13 11 28 28 C 1.53688 * 108.00477 * 1.07993 * 27 14 13 29 29 H 1.09002 * 112.55775 * 254.08616 * 28 27 14 30 30 C 1.46675 * 125.33244 * 0.02562 * 9 7 2 31 31 H 0.97004 * 119.99425 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.02877 * 42.18991 * 10 9 7 33 33 H 1.09001 * 110.02555 * 280.77401 * 10 9 7 34 34 H 1.08994 * 110.15260 * 159.31679 * 13 11 10 35 35 H 1.08997 * 109.95484 * 37.88526 * 13 11 10 36 36 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 37 37 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 38 38 H 1.08003 * 126.90799 * 359.95570 * 19 18 17 39 39 H 1.07995 * 120.14369 * 359.96002 * 21 20 19 40 40 H 1.07994 * 119.78857 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.65369 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.09312 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.76055 * 120.72144 * 27 14 13 44 44 H 1.09001 * 109.75492 * 241.44185 * 27 14 13 45 45 H 1.08995 * 109.77024 * 60.92909 * 30 9 7 46 46 H 1.08993 * 109.77168 * 300.16550 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9378 -3.7220 -0.0005 11 6 0.8503 -4.7060 0.4680 12 1 0.8865 -4.9026 1.5395 13 6 0.9079 -5.9829 -0.3930 14 7 0.1868 -5.6842 -1.6357 15 6 0.2935 -6.3799 -2.7852 16 8 -0.3543 -6.0500 -3.7560 17 6 1.2223 -7.5639 -2.8658 18 6 1.1566 -8.1605 -4.2481 19 6 1.9382 -7.8027 -5.2760 20 6 1.5283 -8.6373 -6.4118 21 6 1.9423 -8.7505 -7.7381 22 6 1.3348 -9.6563 -8.5629 23 6 0.3098 -10.4618 -8.0879 24 6 -0.1130 -10.3640 -6.7796 25 6 0.4916 -9.4509 -5.9246 26 8 0.3092 -9.1331 -4.6272 27 6 -0.6728 -4.5143 -1.4293 28 6 -0.4704 -4.0246 0.0134 29 1 -1.3139 -4.2675 0.6596 30 6 -0.1349 -2.5245 -0.0005 31 1 -0.4849 0.8401 -0.0004 32 1 2.7832 -3.7447 0.6872 33 1 2.2676 -3.9814 -1.0066 34 1 0.4257 -6.8095 0.1286 35 1 1.9447 -6.2354 -0.6150 36 1 2.2423 -7.2403 -2.6583 37 1 0.9220 -8.3119 -2.1322 38 1 2.7138 -7.0511 -5.2702 39 1 2.7392 -8.1253 -8.1127 40 1 1.6549 -9.7452 -9.5905 41 1 -0.1616 -11.1727 -8.7502 42 1 -0.9119 -10.9955 -6.4201 43 1 -0.3957 -3.7254 -2.1285 44 1 -1.7158 -4.7920 -1.5813 45 1 -0.5483 -2.0625 -0.8970 46 1 -0.5499 -2.0455 0.8862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048971100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:21 Heat of formation + Delta-G solvation = 9.976676 kcal Electronic energy + Delta-G solvation = -28763.139346 eV Core-core repulsion = 24812.085534 eV Total energy + Delta-G solvation = -3951.053812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.48108 -41.54471 -39.69440 -38.77674 -36.64033 -34.44639 -34.04983 -32.66140 -31.59287 -31.35917 -31.25243 -28.72886 -27.20947 -26.87439 -24.61274 -23.89980 -22.85025 -22.20527 -21.91673 -20.84952 -20.43666 -18.93520 -18.36179 -18.26604 -17.77208 -17.37409 -17.07388 -16.76995 -16.46463 -16.00112 -15.92707 -15.50776 -15.09754 -14.74477 -14.66870 -14.60477 -14.14005 -14.06907 -13.80505 -13.60557 -13.44702 -13.28439 -13.25444 -13.16642 -13.06223 -12.75876 -12.68098 -12.62987 -12.06766 -11.87194 -11.86512 -11.66136 -11.57679 -11.43094 -11.24983 -10.98108 -10.69952 -9.67525 -9.60500 -9.14085 -8.88312 -7.86128 -5.21053 -0.09195 0.38671 1.21297 1.44332 1.47513 1.50773 1.53686 1.65832 2.08162 2.48764 2.76241 3.26906 3.31604 3.39561 3.50001 3.68369 3.71860 3.88957 3.95067 4.03932 4.10608 4.14464 4.20180 4.23929 4.32192 4.35007 4.45624 4.54180 4.57589 4.64226 4.74351 4.79911 4.84940 4.92477 4.96229 5.04211 5.13538 5.21595 5.25148 5.32881 5.40123 5.45350 5.47555 5.49831 5.60905 5.74182 5.77677 6.17399 6.20906 6.47866 7.04171 7.10855 7.80228 8.41316 9.23801 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002258 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.307663 B =12397.162521 C =13093.110093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.242 4.242 8 H 0.083 0.917 9 N -0.626 5.626 10 C 0.136 3.864 11 C -0.094 4.094 12 H 0.131 0.869 13 C 0.109 3.891 14 N -0.607 5.607 15 C 0.522 3.478 16 O -0.590 6.590 17 C -0.051 4.051 18 C 0.041 3.959 19 C -0.207 4.207 20 C -0.156 4.156 21 C -0.086 4.086 22 C -0.135 4.135 23 C -0.090 4.090 24 C -0.121 4.121 25 C 0.023 3.977 26 O -0.207 6.207 27 C 0.127 3.873 28 C -0.110 4.110 29 H 0.117 0.883 30 C 0.196 3.804 31 H 0.246 0.754 32 H 0.048 0.952 33 H 0.012 0.988 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.142 0.858 40 H 0.160 0.840 41 H 0.170 0.830 42 H 0.147 0.853 43 H 0.028 0.972 44 H 0.063 0.937 45 H 0.002 0.998 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -25.290 -7.724 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.101 0.899 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.114 4.114 12 H 0.148 0.852 13 C -0.013 4.013 14 N -0.339 5.339 15 C 0.312 3.688 16 O -0.471 6.471 17 C -0.090 4.090 18 C -0.007 4.007 19 C -0.226 4.226 20 C -0.156 4.156 21 C -0.104 4.104 22 C -0.153 4.153 23 C -0.108 4.108 24 C -0.140 4.140 25 C -0.024 4.024 26 O -0.110 6.110 27 C 0.004 3.996 28 C -0.130 4.130 29 H 0.135 0.865 30 C 0.071 3.929 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.179 0.821 37 H 0.167 0.833 38 H 0.186 0.814 39 H 0.159 0.841 40 H 0.178 0.822 41 H 0.187 0.813 42 H 0.165 0.835 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.020 0.980 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 3.328 -25.073 -8.121 26.565 hybrid contribution 0.056 1.996 -0.182 2.005 sum 3.384 -23.078 -8.302 24.758 Atomic orbital electron populations 1.70182 1.06284 1.25267 1.58354 1.25660 0.96615 1.01117 1.02735 0.85168 0.77139 0.78892 0.78245 1.20713 1.22269 1.19801 1.19412 0.91027 0.83785 1.42844 0.89886 1.44547 1.02277 1.01433 1.86929 1.21508 0.95590 0.84430 0.97336 1.23007 0.93216 0.93713 1.01442 0.85155 1.22336 0.98703 0.97251 0.82982 1.48313 1.43972 1.29423 1.12228 1.20661 0.82999 0.84293 0.80876 1.90738 1.48556 1.70518 1.37248 1.20352 1.02822 0.94762 0.91020 1.21839 0.90807 0.90656 0.97375 1.22520 1.05137 1.03639 0.91299 1.20304 0.99359 0.99438 0.96536 1.20651 1.00251 0.98936 0.90564 1.21219 0.96897 0.95945 1.01241 1.21399 0.96428 0.99280 0.93667 1.20358 1.02115 0.98728 0.92766 1.20151 0.99098 1.00345 0.82804 1.83868 1.53382 1.48185 1.25524 1.21659 0.94272 0.87082 0.96635 1.22969 0.99653 0.95861 0.94496 0.86459 1.20723 0.84046 0.90404 0.97726 0.94492 0.93419 0.97007 0.87104 0.87568 0.82072 0.83253 0.81355 0.84061 0.82218 0.81300 0.83547 0.95313 0.91848 0.98025 0.96691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.85 10.25 21.65 0.22 -57.63 16 2 C -0.07 -3.92 5.48 84.86 0.47 -3.45 16 3 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.24 -13.46 10.25 84.03 0.86 -12.59 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -31.33 3.38 -697.57 -2.36 -33.69 16 10 C 0.14 5.01 6.49 86.65 0.56 5.57 16 11 C -0.09 -2.51 4.16 -9.27 -0.04 -2.55 16 12 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 13 C 0.11 2.04 5.77 86.71 0.50 2.54 16 14 N -0.61 -16.97 3.30 -817.34 -2.70 -19.67 16 15 C 0.52 15.53 7.83 87.65 0.69 16.21 16 16 O -0.59 -24.24 16.34 -3.04 -0.05 -24.29 16 17 C -0.05 -0.97 5.23 29.10 0.15 -0.82 16 18 C 0.04 1.06 5.72 24.72 0.14 1.20 16 19 C -0.21 -5.40 11.01 23.54 0.26 -5.14 16 20 C -0.16 -4.09 6.40 -20.21 -0.13 -4.22 16 21 C -0.09 -1.75 10.05 22.20 0.22 -1.53 16 22 C -0.14 -2.08 9.98 22.04 0.22 -1.86 16 23 C -0.09 -1.34 10.01 22.30 0.22 -1.12 16 24 C -0.12 -2.44 10.07 22.34 0.23 -2.22 16 25 C 0.02 0.62 7.42 22.99 0.17 0.79 16 26 O -0.21 -5.99 10.58 -8.99 -0.10 -6.09 16 27 C 0.13 4.45 6.21 86.58 0.54 4.99 16 28 C -0.11 -3.70 4.01 -9.49 -0.04 -3.74 16 29 H 0.12 3.32 8.14 -2.39 -0.02 3.31 16 30 C 0.20 9.49 4.77 86.59 0.41 9.91 16 31 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.01 0.46 7.72 -2.39 -0.02 0.44 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.42 7.43 -2.39 -0.02 1.40 16 36 H 0.16 1.96 7.88 -2.39 -0.02 1.94 16 37 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 39 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 41 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.03 1.27 7.29 -2.39 -0.02 1.25 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.00 0.09 6.73 -2.39 -0.02 0.07 16 46 H 0.01 0.81 7.37 -2.39 -0.02 0.79 16 Total: -1.00 -84.06 375.32 3.47 -80.59 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.99 Total: 10.65 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.44 Total: 1.97 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.84 Total: -110.98 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.14 Total: -30.38 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -84.06 3.47 -80.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048971100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.563 kcal (2) G-P(sol) polarization free energy of solvation -84.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds