Wall clock time and date at job start Tue Mar 31 2020 22:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47035 * 300.00132 * 3 2 1 6 6 H 1.48501 * 109.47292 * 59.99670 * 3 2 1 7 7 C 1.38807 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00041 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00321 * 0.02562 * 7 2 1 10 10 C 1.47169 * 125.25142 * 359.17831 * 9 7 2 11 11 C 1.53694 * 107.73652 * 180.36449 * 10 9 7 12 12 H 1.08998 * 113.05305 * 254.94521 * 11 10 9 13 13 C 1.53718 * 109.34201 * 128.68994 * 11 10 9 14 14 N 1.46676 * 107.94420 * 266.25302 * 13 11 10 15 15 C 1.34775 * 125.33760 * 180.28047 * 14 13 11 16 16 O 1.21281 * 119.99999 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00055 * 180.02562 * 15 14 13 18 18 C 1.50696 * 109.47403 * 180.02562 * 17 15 14 19 19 C 1.33997 * 126.90964 * 264.68945 * 18 17 15 20 20 O 1.34450 * 110.15749 * 179.82328 * 19 18 17 21 21 C 1.34815 * 110.88508 * 0.45833 * 20 19 18 22 22 C 1.38941 * 133.49404 * 179.68815 * 21 20 19 23 23 C 1.37850 * 119.81717 * 180.02562 * 22 21 20 24 24 C 1.38748 * 120.68177 * 0.02562 * 23 22 21 25 25 C 1.36728 * 120.41832 * 359.94243 * 24 23 22 26 26 C 1.39403 * 119.72007 * 0.06837 * 25 24 23 27 27 C 1.46773 * 109.31990 * 0.54981 * 14 13 11 28 28 C 1.53964 * 106.62970 * 341.47650 * 27 14 13 29 29 H 1.08993 * 113.01672 * 265.72185 * 28 27 14 30 30 C 1.46737 * 125.33405 * 179.97438 * 9 7 2 31 31 H 0.96998 * 120.00141 * 0.02562 * 1 2 3 32 32 H 1.09005 * 108.95720 * 61.33810 * 10 9 7 33 33 H 1.09001 * 110.83573 * 300.46266 * 10 9 7 34 34 H 1.08995 * 109.77226 * 146.63649 * 13 11 10 35 35 H 1.08998 * 109.77671 * 25.87479 * 13 11 10 36 36 H 1.08998 * 109.47206 * 300.00458 * 17 15 14 37 37 H 1.09003 * 109.47090 * 60.00248 * 17 15 14 38 38 H 1.08003 * 124.91920 * 359.97438 * 19 18 17 39 39 H 1.08003 * 120.09359 * 0.02562 * 22 21 20 40 40 H 1.07993 * 119.65631 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.78539 * 179.97438 * 24 23 22 42 42 H 1.08006 * 120.14207 * 180.02562 * 25 24 23 43 43 H 1.08996 * 110.02744 * 100.77556 * 27 14 13 44 44 H 1.09005 * 110.02115 * 222.18546 * 27 14 13 45 45 H 1.09006 * 110.00877 * 42.37663 * 30 9 7 46 46 H 1.09000 * 110.01274 * 281.01660 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1397 -2.5229 0.0172 11 6 -0.4718 -4.0236 0.0201 12 1 -0.8294 -4.3834 -0.9446 13 6 -1.4540 -4.3255 1.1634 14 7 -0.6721 -4.7377 2.3339 15 6 -1.1851 -5.0887 3.5297 16 8 -2.3858 -5.0793 3.7009 17 6 -0.2669 -5.4930 4.6542 18 6 -1.0850 -5.8357 5.8724 19 6 -1.3854 -5.0232 6.8947 20 8 -2.1370 -5.6749 7.7992 21 6 -2.3550 -6.9485 7.4147 22 6 -3.0460 -8.0131 7.9800 23 6 -3.0887 -9.2266 7.3273 24 6 -2.4474 -9.3981 6.1089 25 6 -1.7626 -8.3629 5.5353 26 6 -1.7081 -7.1285 6.1807 27 6 0.7568 -4.7016 2.0006 28 6 0.8511 -4.7081 0.4638 29 1 0.9785 -5.7079 0.0490 30 6 1.9382 -3.7215 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5485 -2.0567 -0.8793 33 1 -0.5625 -2.0503 0.9038 34 1 -2.1275 -5.1299 0.8680 35 1 -2.0297 -3.4309 1.4009 36 1 0.3163 -6.3629 4.3521 37 1 0.4060 -4.6680 4.8883 38 1 -1.0715 -3.9932 6.9786 39 1 -3.5482 -7.8904 8.9283 40 1 -3.6262 -10.0524 7.7693 41 1 -2.4899 -10.3552 5.6103 42 1 -1.2654 -8.5013 4.5865 43 1 1.2101 -3.7938 2.3986 44 1 1.2576 -5.5794 2.4091 45 1 2.7814 -3.7446 0.6909 46 1 2.2717 -3.9788 -1.0048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049130846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:25 Heat of formation + Delta-G solvation = 9.577234 kcal Electronic energy + Delta-G solvation = -29134.003747 eV Core-core repulsion = 25182.932613 eV Total energy + Delta-G solvation = -3951.071133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.43062 -41.46683 -39.62060 -38.76078 -36.54726 -34.95260 -34.09303 -32.17861 -31.44924 -31.07379 -30.75803 -29.02906 -27.12541 -26.97607 -24.55151 -24.21672 -23.23576 -21.89347 -21.56789 -20.73537 -20.15239 -18.84794 -18.29729 -18.20736 -17.90368 -17.39281 -16.98173 -16.70470 -16.57104 -16.16070 -15.87220 -15.50047 -15.08770 -14.72549 -14.66588 -14.61305 -14.26853 -13.91601 -13.79808 -13.51413 -13.35813 -13.25754 -13.21148 -13.04646 -13.01729 -12.74779 -12.66971 -12.53570 -11.93523 -11.87441 -11.84481 -11.81134 -11.50391 -11.33419 -11.21011 -10.79151 -10.67071 -9.63533 -9.58555 -9.11232 -8.85724 -7.84102 -5.18673 -0.01611 0.41357 1.26084 1.46214 1.46339 1.56721 1.60147 1.86567 2.12100 2.50191 2.79052 3.33685 3.35908 3.49429 3.55761 3.59723 3.77786 3.87205 3.92581 4.00760 4.14228 4.17825 4.29996 4.34853 4.41400 4.46796 4.49282 4.54549 4.60094 4.63002 4.68859 4.77081 4.86870 4.94859 4.98683 5.08597 5.13239 5.27184 5.28174 5.36224 5.43236 5.46511 5.50770 5.53042 5.64742 5.73445 5.78963 6.19255 6.22050 6.54606 7.11719 7.13925 7.81797 8.43353 9.26172 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019589 B = 0.002511 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.054664 B =11146.537748 C =11852.925260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.233 4.233 8 H 0.088 0.912 9 N -0.624 5.624 10 C 0.198 3.802 11 C -0.113 4.113 12 H 0.111 0.889 13 C 0.125 3.875 14 N -0.609 5.609 15 C 0.523 3.477 16 O -0.584 6.584 17 C -0.054 4.054 18 C -0.176 4.176 19 C 0.011 3.989 20 O -0.206 6.206 21 C 0.018 3.982 22 C -0.118 4.118 23 C -0.093 4.093 24 C -0.135 4.135 25 C -0.087 4.087 26 C -0.137 4.137 27 C 0.112 3.888 28 C -0.093 4.093 29 H 0.134 0.866 30 C 0.139 3.861 31 H 0.243 0.757 32 H 0.003 0.997 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.232 0.768 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.157 0.843 42 H 0.133 0.867 43 H 0.054 0.946 44 H 0.114 0.886 45 H 0.051 0.949 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.122 -21.235 12.254 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.224 1.224 6 H -0.225 1.225 7 C -0.362 4.362 8 H 0.106 0.894 9 N -0.351 5.351 10 C 0.073 3.927 11 C -0.132 4.132 12 H 0.129 0.871 13 C 0.002 3.998 14 N -0.342 5.342 15 C 0.313 3.687 16 O -0.464 6.464 17 C -0.093 4.093 18 C -0.177 4.177 19 C -0.054 4.054 20 O -0.108 6.108 21 C -0.029 4.029 22 C -0.137 4.137 23 C -0.111 4.111 24 C -0.153 4.153 25 C -0.105 4.105 26 C -0.138 4.138 27 C -0.010 4.010 28 C -0.112 4.112 29 H 0.152 0.848 30 C 0.014 3.986 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.025 0.975 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.248 0.752 39 H 0.166 0.834 40 H 0.186 0.814 41 H 0.175 0.825 42 H 0.150 0.850 43 H 0.073 0.927 44 H 0.132 0.868 45 H 0.070 0.930 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.646 -20.946 12.654 24.480 hybrid contribution -0.017 1.984 -0.427 2.029 sum -0.664 -18.963 12.227 22.573 Atomic orbital electron populations 1.70211 1.06365 1.24890 1.58819 1.25627 0.96483 1.01057 1.03086 0.85064 0.78482 0.79775 0.76374 1.18502 1.22354 1.22463 1.19499 0.91114 0.83570 1.41997 0.89442 1.44662 1.02033 1.01451 1.86940 1.20835 0.84121 0.90262 0.97455 1.22982 0.95541 0.96535 0.98189 0.87078 1.21628 0.94143 0.98737 0.85274 1.48375 1.08866 1.65723 1.11261 1.20848 0.88885 0.76394 0.82575 1.90687 1.17800 1.55569 1.82393 1.19974 0.95950 1.05299 0.88080 1.20677 1.05819 0.93199 0.98039 1.24299 0.94067 0.98687 0.88311 1.83974 1.59828 1.21627 1.45389 1.20136 1.02118 0.84838 0.95821 1.20344 1.01054 0.90023 1.02236 1.21371 0.98498 0.96398 0.94805 1.21180 0.97956 0.99753 0.96383 1.20549 0.99336 0.90851 0.99769 1.20064 1.01929 0.95524 0.96262 1.22170 0.80353 1.02793 0.95664 1.22956 0.93923 1.00049 0.94312 0.84775 1.21389 0.94921 0.83772 0.98472 0.94766 0.97868 0.97497 0.90874 0.94534 0.85136 0.85689 0.75228 0.83374 0.81409 0.82548 0.84960 0.92737 0.86789 0.93046 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.56 10.25 21.65 0.22 -57.34 16 2 C -0.07 -3.93 5.48 84.86 0.47 -3.46 16 3 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.23 -12.48 10.25 84.03 0.86 -11.62 16 8 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -29.99 3.39 -696.50 -2.36 -32.35 16 10 C 0.20 9.48 4.77 86.49 0.41 9.89 16 11 C -0.11 -3.82 4.01 -9.49 -0.04 -3.86 16 12 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 13 C 0.13 4.28 6.23 86.59 0.54 4.82 16 14 N -0.61 -18.64 3.31 -817.41 -2.71 -21.35 16 15 C 0.52 16.38 7.83 87.66 0.69 17.06 16 16 O -0.58 -23.60 16.34 -3.03 -0.05 -23.65 16 17 C -0.05 -1.19 5.28 29.10 0.15 -1.04 16 18 C -0.18 -4.52 4.85 -18.60 -0.09 -4.61 16 19 C 0.01 0.27 11.89 66.85 0.79 1.06 16 20 O -0.21 -5.62 10.58 -9.00 -0.10 -5.72 16 21 C 0.02 0.46 7.42 22.99 0.17 0.63 16 22 C -0.12 -2.35 10.07 22.35 0.23 -2.12 16 23 C -0.09 -1.43 10.01 22.30 0.22 -1.21 16 24 C -0.13 -2.24 9.98 22.04 0.22 -2.02 16 25 C -0.09 -1.90 10.05 22.20 0.22 -1.67 16 26 C -0.14 -3.63 6.38 -20.21 -0.13 -3.76 16 27 C 0.11 2.88 5.88 86.65 0.51 3.39 16 28 C -0.09 -2.52 4.12 -9.32 -0.04 -2.56 16 29 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 30 C 0.14 4.84 6.42 86.65 0.56 5.40 16 31 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.00 0.17 7.40 -2.38 -0.02 0.15 16 33 H 0.01 0.38 6.58 -2.39 -0.02 0.37 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.04 1.50 7.44 -2.39 -0.02 1.48 16 36 H 0.13 2.11 7.88 -2.39 -0.02 2.09 16 37 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.23 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.05 1.70 7.75 -2.39 -0.02 1.68 16 44 H 0.11 1.90 7.62 -2.38 -0.02 1.88 16 45 H 0.05 1.66 7.98 -2.38 -0.02 1.64 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.25 375.46 3.77 -75.48 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.99 Total: 13.21 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 5.75 Total: 4.32 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -4.85 Total: -111.03 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.14 Total: -29.37 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -79.25 3.77 -75.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049130846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.059 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds