Wall clock time and date at job start Wed Apr 1 2020 00:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00095 * 2 1 4 4 H 1.48507 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47428 * 300.00572 * 3 2 1 6 6 H 1.48498 * 109.47293 * 60.00620 * 3 2 1 7 7 C 1.38799 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99992 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47558 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99684 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00461 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00237 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46998 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 17 17 H 1.08997 * 110.88978 * 308.87785 * 16 15 14 18 18 C 1.55156 * 111.00671 * 72.80739 * 16 15 14 19 19 C 1.54318 * 102.94751 * 153.57052 * 18 16 15 20 20 N 1.47022 * 107.27114 * 337.80833 * 19 18 16 21 21 C 1.34779 * 125.64998 * 178.90119 * 20 19 18 22 22 O 1.21273 * 120.00026 * 180.02562 * 21 20 19 23 23 C 1.50699 * 119.99786 * 0.04324 * 21 20 19 24 24 C 1.52997 * 109.46902 * 179.97438 * 23 21 20 25 25 C 1.53007 * 117.50103 * 243.62158 * 24 23 21 26 26 C 1.53000 * 59.99894 * 252.51028 * 25 24 23 27 27 C 1.47429 * 108.70122 * 358.93595 * 20 19 18 28 28 H 0.97009 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47382 * 59.99462 * 10 9 7 30 30 H 1.09004 * 109.47282 * 299.99825 * 10 9 7 31 31 H 0.97010 * 119.99854 * 0.02562 * 13 11 10 32 32 H 1.08993 * 109.47452 * 60.00368 * 14 13 11 33 33 H 1.09000 * 109.47175 * 300.00158 * 14 13 11 34 34 H 1.09000 * 109.47050 * 299.99945 * 15 14 13 35 35 H 1.09001 * 109.46801 * 60.00058 * 15 14 13 36 36 H 1.09001 * 110.72125 * 271.94047 * 18 16 15 37 37 H 1.09005 * 110.71751 * 35.20226 * 18 16 15 38 38 H 1.08994 * 109.88478 * 218.38773 * 19 18 16 39 39 H 1.08997 * 110.01035 * 97.29669 * 19 18 16 40 40 H 1.08994 * 109.47459 * 299.99805 * 23 21 20 41 41 H 1.09007 * 109.47046 * 59.99861 * 23 21 20 42 42 H 1.08997 * 115.55340 * 29.33157 * 24 23 21 43 43 H 1.08997 * 117.49443 * 359.97438 * 25 24 23 44 44 H 1.08997 * 117.49542 * 145.02620 * 25 24 23 45 45 H 1.08999 * 117.50335 * 252.51049 * 26 25 24 46 46 H 1.09001 * 117.49699 * 107.48858 * 26 25 24 47 47 H 1.08992 * 110.36825 * 265.28927 * 27 20 19 48 48 H 1.09005 * 110.36175 * 142.96909 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5156 -3.8914 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7909 -5.5023 0.0010 13 7 2.8438 -6.3432 -0.0003 14 6 2.3301 -7.7151 -0.0003 15 6 3.5022 -8.6986 -0.0001 16 6 2.9655 -10.1314 0.0006 17 1 2.2308 -10.2709 0.7935 18 6 2.3692 -10.5026 -1.3829 19 6 2.5278 -12.0370 -1.4273 20 7 3.5947 -12.3931 -0.4805 21 6 4.0214 -13.6430 -0.2116 22 8 4.9125 -13.8198 0.5918 23 6 3.3914 -14.8207 -0.9095 24 6 4.0540 -16.1130 -0.4281 25 6 4.8219 -16.9404 -1.4609 26 6 3.4736 -17.4353 -0.9335 27 6 4.1200 -11.1566 0.1267 28 1 -0.4850 0.8401 0.0004 29 1 3.1243 -3.7314 0.8894 30 1 3.1243 -3.7314 -0.8906 31 1 3.8007 -6.1836 -0.0006 32 1 1.7212 -7.8752 -0.8900 33 1 1.7217 -7.8753 0.8899 34 1 4.1108 -8.5386 -0.8901 35 1 4.1107 -8.5385 0.8899 36 1 1.3173 -10.2219 -1.4373 37 1 2.9368 -10.0328 -2.1861 38 1 2.8046 -12.3521 -2.4333 39 1 1.5949 -12.5172 -1.1322 40 1 2.3261 -14.8512 -0.6809 41 1 3.5292 -14.7213 -1.9862 42 1 4.4436 -16.0907 0.5896 43 1 4.8546 -16.5643 -2.4834 44 1 5.7169 -17.4626 -1.1227 45 1 3.4816 -18.2830 -0.2484 46 1 2.6197 -17.3846 -1.6091 47 1 4.9973 -10.8091 -0.4189 48 1 4.3660 -11.3238 1.1754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059007049.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:13 Heat of formation + Delta-G solvation = -63.358865 kcal Electronic energy + Delta-G solvation = -25543.206382 eV Core-core repulsion = 21724.416453 eV Total energy + Delta-G solvation = -3818.789929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62155 -39.25744 -38.47836 -37.26262 -35.34519 -33.12839 -32.43941 -30.66968 -30.17915 -29.34755 -27.47199 -25.49726 -23.91367 -23.06699 -22.83571 -21.27486 -20.93067 -20.16604 -19.56690 -17.86229 -17.65259 -16.80753 -16.47150 -16.16963 -15.99191 -15.67208 -15.07296 -14.91084 -14.81546 -14.62767 -14.37014 -14.03007 -13.80086 -13.52625 -13.22555 -13.12199 -12.96253 -12.61905 -12.54361 -12.45704 -12.06815 -11.98945 -11.95161 -11.66634 -11.45966 -11.14942 -11.08146 -11.03056 -10.99262 -10.83432 -10.76325 -10.51806 -10.17921 -9.81706 -9.42658 -9.09485 -9.08931 -8.90947 -8.24530 -6.51267 -6.23037 -3.93517 2.23676 2.48199 3.02520 3.08282 3.20716 3.27530 3.32068 3.32918 3.68146 3.86386 4.08438 4.18566 4.19297 4.24036 4.33376 4.44352 4.61681 4.66720 4.80718 4.84189 4.91785 4.93469 5.02858 5.05946 5.12405 5.13960 5.17762 5.19461 5.21498 5.33545 5.35761 5.42949 5.44773 5.52259 5.60125 5.64662 5.71154 5.81041 5.84176 5.87501 5.89954 5.94677 6.12746 6.59264 7.06317 7.58792 7.68380 7.75573 8.34287 8.59463 9.22596 10.84478 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.051334 B = 0.001335 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.317962 B =20968.249864 C =21250.066525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.740 5.740 14 C 0.122 3.878 15 C -0.120 4.120 16 C -0.097 4.097 17 H 0.091 0.909 18 C -0.131 4.131 19 C 0.099 3.901 20 N -0.622 5.622 21 C 0.531 3.469 22 O -0.538 6.538 23 C -0.105 4.105 24 C -0.143 4.143 25 C -0.178 4.178 26 C -0.179 4.179 27 C 0.110 3.890 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 -31.527 -4.189 32.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.159 4.159 16 C -0.117 4.117 17 H 0.109 0.891 18 C -0.168 4.168 19 C -0.024 4.024 20 N -0.357 5.357 21 C 0.320 3.680 22 O -0.415 6.415 23 C -0.145 4.145 24 C -0.161 4.161 25 C -0.215 4.215 26 C -0.216 4.216 27 C -0.012 4.012 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.959 -31.951 -3.748 32.914 hybrid contribution 2.367 1.387 -0.107 2.745 sum 9.326 -30.564 -3.855 32.187 Atomic orbital electron populations 1.70031 1.05960 1.27348 1.46957 1.24989 0.95019 0.99031 0.94519 0.86118 0.79594 0.81880 0.77911 1.19611 1.20565 1.20556 1.22911 0.94948 0.91646 1.58846 0.90873 1.85393 1.04976 0.96366 1.96715 1.23535 1.06563 0.95425 1.04930 1.20309 0.86527 0.86314 0.75122 1.90701 1.15387 1.85641 1.47504 1.46004 1.09956 1.05550 1.78009 1.21244 0.95868 0.80619 1.02470 1.21720 0.98091 0.92666 1.03374 1.22305 0.97393 0.93741 0.98234 0.89083 1.22788 1.02965 0.93521 0.97563 1.22095 0.90642 0.96608 0.93056 1.48534 1.37916 1.05819 1.43423 1.20287 0.82730 0.82747 0.82269 1.90706 1.30701 1.84729 1.35350 1.21199 1.00955 0.91421 1.00917 1.22067 1.03657 0.90029 1.00377 1.23040 0.95707 1.04029 0.98732 1.23004 0.97253 0.97435 1.03949 1.22271 0.96339 0.83145 0.99445 0.92233 0.89222 0.89226 0.76821 0.91521 0.91632 0.90730 0.90638 0.89280 0.90009 0.91226 0.91095 0.88447 0.88822 0.86394 0.88844 0.88686 0.88591 0.88711 0.91193 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.61 7.85 -10.99 -0.09 9.53 16 12 O -0.52 -11.52 15.86 5.56 0.09 -11.44 16 13 N -0.74 -9.15 5.56 -60.29 -0.33 -9.49 16 14 C 0.12 1.23 5.58 -4.04 -0.02 1.20 16 15 C -0.12 -0.77 4.84 -26.73 -0.13 -0.90 16 16 C -0.10 -0.58 3.01 -88.47 -0.27 -0.84 16 17 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 18 C -0.13 -0.65 5.90 -24.90 -0.15 -0.80 16 19 C 0.10 0.47 6.49 -3.07 -0.02 0.45 16 20 N -0.62 -4.61 3.33 -170.52 -0.57 -5.18 16 21 C 0.53 4.81 7.85 -10.98 -0.09 4.73 16 22 O -0.54 -7.01 15.82 5.56 0.09 -6.93 16 23 C -0.11 -0.61 5.17 -27.89 -0.14 -0.76 16 24 C -0.14 -0.97 5.41 -90.62 -0.49 -1.46 16 25 C -0.18 -1.03 10.18 -26.73 -0.27 -1.30 16 26 C -0.18 -0.90 10.25 -26.73 -0.27 -1.18 16 27 C 0.11 0.80 6.38 -2.52 -0.02 0.78 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 31 H 0.40 3.73 8.47 -40.82 -0.35 3.38 16 32 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.43 7.97 -51.93 -0.41 0.01 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.39 7.92 -51.93 -0.41 -0.02 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.41 7.87 -51.92 -0.41 0.00 16 42 H 0.12 1.03 7.30 -51.93 -0.38 0.65 16 43 H 0.09 0.46 8.03 -51.93 -0.42 0.05 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 48 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 LS Contribution 410.48 15.07 6.19 6.19 Total: -1.00 -36.74 410.48 -10.81 -47.55 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.23 Total: -1.58 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.53 Total: -6.23 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: -0.17 Total: -39.96 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.36 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.74 -10.81 -47.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059007049.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.809 kcal (2) G-P(sol) polarization free energy of solvation -36.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds