Wall clock time and date at job start Wed Apr 1 2020 00:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00095 * 2 1 4 4 H 1.48507 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47428 * 300.00572 * 3 2 1 6 6 H 1.48498 * 109.47293 * 60.00620 * 3 2 1 7 7 C 1.38799 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99992 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47558 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99684 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00461 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00237 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46998 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 17 17 H 1.08997 * 110.88978 * 308.87785 * 16 15 14 18 18 C 1.55156 * 111.00671 * 72.80739 * 16 15 14 19 19 C 1.54318 * 102.94751 * 153.57052 * 18 16 15 20 20 N 1.47022 * 107.27114 * 337.80833 * 19 18 16 21 21 C 1.34779 * 125.64998 * 178.90119 * 20 19 18 22 22 O 1.21273 * 120.00026 * 180.02562 * 21 20 19 23 23 C 1.50699 * 119.99786 * 0.04324 * 21 20 19 24 24 C 1.52997 * 109.46902 * 179.97438 * 23 21 20 25 25 C 1.53007 * 117.50103 * 243.62158 * 24 23 21 26 26 C 1.53000 * 59.99894 * 252.51028 * 25 24 23 27 27 C 1.47429 * 108.70122 * 358.93595 * 20 19 18 28 28 H 0.97009 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47382 * 59.99462 * 10 9 7 30 30 H 1.09004 * 109.47282 * 299.99825 * 10 9 7 31 31 H 0.97010 * 119.99854 * 0.02562 * 13 11 10 32 32 H 1.08993 * 109.47452 * 60.00368 * 14 13 11 33 33 H 1.09000 * 109.47175 * 300.00158 * 14 13 11 34 34 H 1.09000 * 109.47050 * 299.99945 * 15 14 13 35 35 H 1.09001 * 109.46801 * 60.00058 * 15 14 13 36 36 H 1.09001 * 110.72125 * 271.94047 * 18 16 15 37 37 H 1.09005 * 110.71751 * 35.20226 * 18 16 15 38 38 H 1.08994 * 109.88478 * 218.38773 * 19 18 16 39 39 H 1.08997 * 110.01035 * 97.29669 * 19 18 16 40 40 H 1.08994 * 109.47459 * 299.99805 * 23 21 20 41 41 H 1.09007 * 109.47046 * 59.99861 * 23 21 20 42 42 H 1.08997 * 115.55340 * 29.33157 * 24 23 21 43 43 H 1.08997 * 117.49443 * 359.97438 * 25 24 23 44 44 H 1.08997 * 117.49542 * 145.02620 * 25 24 23 45 45 H 1.08999 * 117.50335 * 252.51049 * 26 25 24 46 46 H 1.09001 * 117.49699 * 107.48858 * 26 25 24 47 47 H 1.08992 * 110.36825 * 265.28927 * 27 20 19 48 48 H 1.09005 * 110.36175 * 142.96909 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5156 -3.8914 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7909 -5.5023 0.0010 13 7 2.8438 -6.3432 -0.0003 14 6 2.3301 -7.7151 -0.0003 15 6 3.5022 -8.6986 -0.0001 16 6 2.9655 -10.1314 0.0006 17 1 2.2308 -10.2709 0.7935 18 6 2.3692 -10.5026 -1.3829 19 6 2.5278 -12.0370 -1.4273 20 7 3.5947 -12.3931 -0.4805 21 6 4.0214 -13.6430 -0.2116 22 8 4.9125 -13.8198 0.5918 23 6 3.3914 -14.8207 -0.9095 24 6 4.0540 -16.1130 -0.4281 25 6 4.8219 -16.9404 -1.4609 26 6 3.4736 -17.4353 -0.9335 27 6 4.1200 -11.1566 0.1267 28 1 -0.4850 0.8401 0.0004 29 1 3.1243 -3.7314 0.8894 30 1 3.1243 -3.7314 -0.8906 31 1 3.8007 -6.1836 -0.0006 32 1 1.7212 -7.8752 -0.8900 33 1 1.7217 -7.8753 0.8899 34 1 4.1108 -8.5386 -0.8901 35 1 4.1107 -8.5385 0.8899 36 1 1.3173 -10.2219 -1.4373 37 1 2.9368 -10.0328 -2.1861 38 1 2.8046 -12.3521 -2.4333 39 1 1.5949 -12.5172 -1.1322 40 1 2.3261 -14.8512 -0.6809 41 1 3.5292 -14.7213 -1.9862 42 1 4.4436 -16.0907 0.5896 43 1 4.8546 -16.5643 -2.4834 44 1 5.7169 -17.4626 -1.1227 45 1 3.4816 -18.2830 -0.2484 46 1 2.6197 -17.3846 -1.6091 47 1 4.9973 -10.8091 -0.4189 48 1 4.3660 -11.3238 1.1754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059007049.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:12 Heat of formation + Delta-G solvation = -87.603318 kcal Electronic energy + Delta-G solvation = -25544.257700 eV Core-core repulsion = 21724.416453 eV Total energy + Delta-G solvation = -3819.841247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.22966 -40.56153 -39.10773 -37.81190 -36.34780 -34.57831 -34.00872 -31.63024 -30.64809 -30.36417 -28.33394 -27.61144 -24.57344 -23.70869 -23.23379 -21.89603 -21.76951 -21.10068 -20.13251 -19.78975 -18.22575 -17.82559 -17.30967 -17.09545 -17.02051 -16.87131 -16.72188 -15.90042 -15.77277 -15.44459 -15.24597 -15.00781 -14.71029 -14.48673 -14.40133 -13.96240 -13.76156 -13.67038 -13.41886 -13.20596 -13.14885 -13.00011 -12.90163 -12.59724 -12.47871 -12.39140 -12.33389 -12.05117 -11.69549 -11.62192 -11.53147 -11.32027 -11.15149 -11.03372 -10.92408 -10.77593 -10.25960 -10.07043 -9.68093 -8.65454 -8.34226 -6.11880 1.28608 1.41923 1.48443 1.58689 1.59811 1.64368 1.93947 2.27323 2.35396 2.89765 3.00272 3.33048 3.35262 3.62493 3.69375 3.75216 3.83131 3.99218 4.02658 4.15294 4.22152 4.27977 4.32335 4.34551 4.40646 4.48675 4.53014 4.54022 4.61645 4.68697 4.72145 4.75709 4.79634 4.83859 4.92493 5.02299 5.05604 5.13009 5.22527 5.25810 5.28699 5.34356 5.40731 5.43044 5.49417 6.20816 6.49046 6.54577 7.07565 7.12014 7.28209 8.75270 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.051334 B = 0.001335 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.317962 B =20968.249864 C =21250.066525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.131 4.131 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.714 5.714 14 C 0.121 3.879 15 C -0.107 4.107 16 C -0.090 4.090 17 H 0.086 0.914 18 C -0.128 4.128 19 C 0.096 3.904 20 N -0.622 5.622 21 C 0.521 3.479 22 O -0.590 6.590 23 C -0.096 4.096 24 C -0.162 4.162 25 C -0.183 4.183 26 C -0.165 4.165 27 C 0.108 3.892 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.417 0.583 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.112 0.888 47 H 0.074 0.926 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.012 -32.029 -5.573 34.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.368 5.368 14 C -0.002 4.002 15 C -0.145 4.145 16 C -0.109 4.109 17 H 0.104 0.896 18 C -0.166 4.166 19 C -0.026 4.026 20 N -0.356 5.356 21 C 0.312 3.688 22 O -0.471 6.471 23 C -0.135 4.135 24 C -0.180 4.180 25 C -0.220 4.220 26 C -0.202 4.202 27 C -0.014 4.014 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.254 0.746 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.131 0.869 47 H 0.092 0.908 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.375 -32.479 -5.152 33.935 hybrid contribution 1.986 1.417 0.340 2.464 sum 10.361 -31.062 -4.811 33.096 Atomic orbital electron populations 1.70191 1.07972 1.28526 1.48114 1.26105 0.95933 1.03259 0.93737 0.84918 0.78640 0.76411 0.78061 1.18027 1.19926 1.20000 1.23244 0.95356 0.92052 1.58733 0.89926 1.85564 1.10673 0.99255 1.97046 1.23388 1.03503 0.94529 1.06799 1.20042 0.86264 0.86719 0.75183 1.90690 1.17453 1.86143 1.50258 1.45767 1.10324 1.05298 1.75396 1.21396 0.97275 0.79681 1.01871 1.21618 0.96672 0.91659 1.04547 1.22195 0.96789 0.92987 0.98973 0.89572 1.22810 1.03229 0.93745 0.96832 1.22293 0.90381 0.96539 0.93343 1.48657 1.38093 1.05430 1.43389 1.20918 0.82205 0.83874 0.81785 1.90679 1.33120 1.85535 1.37721 1.21214 1.01438 0.89279 1.01572 1.22003 1.05123 0.91542 0.99359 1.23127 0.96036 1.03845 0.98964 1.23083 0.97322 0.96184 1.03570 1.22257 0.97005 0.83650 0.98536 0.92004 0.87319 0.87132 0.74632 0.91735 0.92774 0.89151 0.89917 0.88877 0.89333 0.89382 0.89732 0.86535 0.86668 0.89305 0.87676 0.89254 0.88438 0.86932 0.90823 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.65 13.22 21.65 0.29 -55.36 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -30.90 9.50 67.95 0.65 -30.26 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 11 C 0.53 18.75 7.85 87.66 0.69 19.44 16 12 O -0.57 -25.49 15.86 -3.04 -0.05 -25.54 16 13 N -0.71 -16.05 5.56 -463.06 -2.57 -18.62 16 14 C 0.12 2.21 5.58 86.38 0.48 2.69 16 15 C -0.11 -1.10 4.84 30.60 0.15 -0.95 16 16 C -0.09 -0.91 3.01 -9.40 -0.03 -0.93 16 17 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 18 C -0.13 -0.95 5.90 31.78 0.19 -0.76 16 19 C 0.10 0.66 6.49 86.73 0.56 1.22 16 20 N -0.62 -8.41 3.33 -811.81 -2.70 -11.11 16 21 C 0.52 9.25 7.85 87.66 0.69 9.94 16 22 O -0.59 -16.07 15.82 -3.01 -0.05 -16.11 16 23 C -0.10 -0.97 5.17 29.85 0.15 -0.81 16 24 C -0.16 -2.13 5.41 -10.79 -0.06 -2.19 16 25 C -0.18 -1.94 10.18 30.60 0.31 -1.63 16 26 C -0.16 -1.41 10.25 30.59 0.31 -1.09 16 27 C 0.11 1.46 6.38 86.86 0.55 2.01 16 28 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 29 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 30 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.42 6.42 8.47 -92.70 -0.79 5.64 16 32 H 0.06 1.26 7.75 -2.39 -0.02 1.24 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 0.72 7.97 -2.39 -0.02 0.70 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.57 7.92 -2.38 -0.02 0.55 16 38 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.12 0.66 7.87 -2.38 -0.02 0.64 16 42 H 0.09 1.69 7.30 -2.39 -0.02 1.68 16 43 H 0.10 0.85 8.03 -2.39 -0.02 0.83 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.07 0.94 8.03 -2.39 -0.02 0.92 16 48 H 0.06 1.06 8.04 -2.38 -0.02 1.04 16 Total: -1.00 -83.69 410.48 1.49 -82.20 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.16 Total: 15.48 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.55 Total: -6.64 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -4.99 Total: -85.10 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.10 Total: -41.65 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -83.69 1.49 -82.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059007049.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.407 kcal (2) G-P(sol) polarization free energy of solvation -83.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds