Wall clock time and date at job start Wed Apr 1 2020 00:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86792 * 120.00264 * 2 1 4 4 H 1.48500 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47463 * 300.00119 * 3 2 1 6 6 H 1.48505 * 109.46912 * 60.00521 * 3 2 1 7 7 C 1.38806 * 119.99444 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99257 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00111 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47470 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99805 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99897 * 179.97438 * 11 10 9 14 14 C 1.47016 * 125.65076 * 359.96379 * 13 11 10 15 15 C 1.54331 * 107.27289 * 178.97666 * 14 13 11 16 16 C 1.55156 * 102.93916 * 337.80609 * 15 14 13 17 17 H 1.09003 * 111.03663 * 277.41553 * 16 15 14 18 18 C 1.52996 * 111.00551 * 153.57773 * 16 15 14 19 19 C 1.52992 * 109.47231 * 181.34587 * 18 16 15 20 20 N 1.46506 * 109.47161 * 179.97438 * 19 18 16 21 21 C 1.34773 * 119.99968 * 179.97438 * 20 19 18 22 22 O 1.21283 * 120.00360 * 359.73034 * 21 20 19 23 23 C 1.50706 * 120.00081 * 180.02562 * 21 20 19 24 24 C 1.52998 * 109.47348 * 179.72561 * 23 21 20 25 25 C 1.52999 * 117.49893 * 243.74621 * 24 23 21 26 26 C 1.52997 * 117.49920 * 175.08525 * 24 23 21 27 27 C 1.47425 * 125.64754 * 180.02562 * 13 11 10 28 28 H 0.97008 * 119.99618 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46983 * 59.99509 * 10 9 7 30 30 H 1.09006 * 109.46821 * 300.00368 * 10 9 7 31 31 H 1.09002 * 109.88292 * 298.38841 * 14 13 11 32 32 H 1.08998 * 109.88394 * 59.39955 * 14 13 11 33 33 H 1.09002 * 110.71490 * 219.44216 * 15 14 13 34 34 H 1.08996 * 110.72107 * 96.16646 * 15 14 13 35 35 H 1.09004 * 109.46699 * 61.34786 * 18 16 15 36 36 H 1.08993 * 109.47124 * 301.34937 * 18 16 15 37 37 H 1.09004 * 109.47116 * 60.00455 * 19 18 16 38 38 H 1.08998 * 109.47794 * 300.00366 * 19 18 16 39 39 H 0.96998 * 119.99507 * 0.02562 * 20 19 18 40 40 H 1.09001 * 109.46564 * 299.73030 * 23 21 20 41 41 H 1.08998 * 109.47012 * 59.72084 * 23 21 20 42 42 H 1.09000 * 115.54631 * 29.41929 * 24 23 21 43 43 H 1.08991 * 117.49827 * 0.02562 * 25 24 23 44 44 H 1.09004 * 117.49499 * 145.01987 * 25 24 23 45 45 H 1.09000 * 117.49964 * 214.98202 * 26 24 23 46 46 H 1.09004 * 117.49966 * 359.97438 * 26 24 23 47 47 H 1.09001 * 110.37002 * 85.25202 * 27 13 11 48 48 H 1.09009 * 110.36625 * 322.93464 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5155 -3.8916 -0.0021 11 6 1.9870 -5.3028 -0.0017 12 8 0.7907 -5.5023 -0.0009 13 7 2.8438 -6.3432 -0.0033 14 6 4.3106 -6.2453 -0.0062 15 6 4.8661 -7.6850 0.0193 16 6 3.6852 -8.5026 0.6062 17 1 3.6723 -8.4451 1.6946 18 6 3.7394 -9.9580 0.1374 19 6 2.5433 -10.7224 0.7082 20 7 2.5948 -12.1159 0.2588 21 6 1.6365 -12.9830 0.6409 22 8 0.7341 -12.6111 1.3608 23 6 1.6898 -14.4166 0.1792 24 6 0.4977 -15.1829 0.7559 25 6 0.7962 -16.3271 1.7268 26 6 0.3074 -16.6337 0.3090 27 6 2.4651 -7.7680 -0.0036 28 1 -0.4850 0.8401 0.0004 29 1 3.1249 -3.7319 0.8875 30 1 3.1235 -3.7311 -0.8925 31 1 4.6463 -5.7345 -0.9087 32 1 4.6475 -5.6999 0.8754 33 1 5.7399 -7.7497 0.6676 34 1 5.1062 -8.0235 -0.9886 35 1 4.6642 -10.4177 0.4859 36 1 3.7053 -9.9905 -0.9515 37 1 1.6184 -10.2627 0.3597 38 1 2.5773 -10.6900 1.7971 39 1 3.3191 -12.4145 -0.3131 40 1 1.6504 -14.4492 -0.9096 41 1 2.6171 -14.8748 0.5230 42 1 -0.3990 -14.5902 0.9369 43 1 1.8418 -16.5336 1.9549 44 1 0.0956 -16.4874 2.5463 45 1 -0.7146 -16.9957 0.1963 46 1 1.0312 -17.0422 -0.3963 47 1 2.2848 -8.1124 -1.0219 48 1 1.5803 -7.9255 0.6133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059198156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:05 Heat of formation + Delta-G solvation = -88.896399 kcal Electronic energy + Delta-G solvation = -25794.079708 eV Core-core repulsion = 21974.182389 eV Total energy + Delta-G solvation = -3819.897319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.16016 -40.76038 -38.85817 -37.99711 -36.34004 -34.60708 -34.03511 -31.66211 -30.85441 -30.24757 -28.11576 -27.60725 -25.14153 -23.32106 -23.20374 -22.23436 -21.41508 -20.77846 -20.71918 -19.58357 -18.23414 -18.08479 -17.48685 -17.06160 -16.90401 -16.83924 -16.50115 -16.06379 -15.88162 -15.56537 -15.22192 -14.91949 -14.61142 -14.46082 -14.35219 -14.14116 -13.91996 -13.58762 -13.37198 -13.25993 -13.16207 -13.07806 -12.92292 -12.61579 -12.42084 -12.34932 -12.32220 -12.03353 -11.73828 -11.64150 -11.55280 -11.31291 -11.17465 -11.01579 -10.97721 -10.74584 -10.30435 -10.08362 -9.71407 -8.71233 -8.36417 -6.15912 1.22461 1.40959 1.43989 1.52494 1.56404 1.67176 2.07694 2.21226 2.25566 2.93316 2.97904 3.20791 3.43108 3.62541 3.76806 3.77144 3.84455 3.86656 4.05207 4.13451 4.17983 4.21506 4.27008 4.33032 4.39659 4.44065 4.51307 4.56642 4.65249 4.70028 4.75099 4.80562 4.81157 4.88174 4.93004 5.04908 5.07830 5.09065 5.19655 5.27158 5.33328 5.35034 5.39882 5.44346 5.49701 6.18155 6.37310 6.60582 7.04479 7.08427 7.32095 8.73343 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027322 B = 0.001552 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.554851 B =18033.992743 C =18867.691345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.002 2.998 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.117 4.117 11 C 0.541 3.459 12 O -0.572 6.572 13 N -0.619 5.619 14 C 0.085 3.915 15 C -0.108 4.108 16 C -0.088 4.088 17 H 0.087 0.913 18 C -0.101 4.101 19 C 0.113 3.887 20 N -0.717 5.717 21 C 0.504 3.496 22 O -0.594 6.594 23 C -0.099 4.099 24 C -0.165 4.165 25 C -0.184 4.184 26 C -0.165 4.165 27 C 0.101 3.899 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.420 0.580 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.072 0.928 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.969 -32.920 -2.136 37.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.269 4.269 11 C 0.330 3.670 12 O -0.451 6.451 13 N -0.353 5.353 14 C -0.037 4.037 15 C -0.146 4.146 16 C -0.108 4.108 17 H 0.105 0.895 18 C -0.139 4.139 19 C -0.011 4.011 20 N -0.370 5.370 21 C 0.292 3.708 22 O -0.475 6.475 23 C -0.138 4.138 24 C -0.183 4.183 25 C -0.221 4.221 26 C -0.202 4.202 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.258 0.742 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.134 0.866 47 H 0.090 0.910 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.397 -32.790 -1.637 36.262 hybrid contribution 0.948 1.530 0.039 1.800 sum 16.346 -31.260 -1.599 35.312 Atomic orbital electron populations 1.70204 1.08084 1.28604 1.47979 1.26172 0.95976 1.03416 0.93615 0.84864 0.78636 0.76068 0.78107 1.17834 1.19842 1.19922 1.23220 0.95334 0.91743 1.58978 0.89812 1.85645 1.10712 0.99480 1.97043 1.23288 1.03308 0.93881 1.06374 1.19851 0.85489 0.86225 0.75465 1.90690 1.17311 1.85864 1.51239 1.48492 1.08183 1.05679 1.72979 1.22436 0.77591 1.00662 1.02973 1.22707 0.97564 0.90446 1.03840 1.22279 0.93310 0.94366 1.00842 0.89481 1.21638 0.97970 0.92043 1.02238 1.21359 0.99298 0.81305 0.99155 1.45883 1.28381 1.09907 1.52786 1.21341 0.80855 0.89290 0.79334 1.90716 1.37116 1.80358 1.39279 1.21246 0.99753 0.89259 1.03557 1.22024 0.99912 0.90988 1.05410 1.23139 1.02901 1.02394 0.93631 1.23092 1.03203 0.96193 0.97688 1.22507 0.98958 0.79545 1.01099 0.91961 0.87586 0.87435 0.90353 0.90674 0.86967 0.88278 0.87387 0.89164 0.93986 0.92792 0.74197 0.85990 0.85909 0.89863 0.87282 0.89679 0.88819 0.86557 0.90975 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.99 13.22 21.65 0.29 -56.70 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.96 29.55 68.60 2.03 45.99 16 4 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.69 9.50 67.96 0.65 -31.05 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.16 -9.00 20.57 -56.49 -1.16 -10.16 16 10 C -0.12 -4.95 5.35 71.23 0.38 -4.57 16 11 C 0.54 22.07 7.87 87.66 0.69 22.76 16 12 O -0.57 -29.12 16.12 -3.03 -0.05 -29.17 16 13 N -0.62 -17.66 3.33 -811.76 -2.70 -20.36 16 14 C 0.09 1.51 6.49 86.73 0.56 2.08 16 15 C -0.11 -0.96 6.42 31.79 0.20 -0.76 16 16 C -0.09 -1.10 3.07 -9.40 -0.03 -1.12 16 17 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 18 C -0.10 -0.69 4.84 30.59 0.15 -0.55 16 19 C 0.11 1.61 5.52 86.38 0.48 2.08 16 20 N -0.72 -7.63 5.56 -463.05 -2.57 -10.21 16 21 C 0.50 8.57 7.83 87.66 0.69 9.26 16 22 O -0.59 -17.25 15.56 -3.04 -0.05 -17.30 16 23 C -0.10 -0.87 5.98 29.85 0.18 -0.69 16 24 C -0.16 -2.29 5.41 -10.80 -0.06 -2.35 16 25 C -0.18 -2.07 10.18 30.62 0.31 -1.76 16 26 C -0.16 -1.51 10.25 30.62 0.31 -1.19 16 27 C 0.10 2.36 5.57 86.86 0.48 2.84 16 28 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 29 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 30 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.56 8.04 -2.39 -0.02 0.54 16 35 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.09 0.43 8.10 -2.39 -0.02 0.41 16 37 H 0.04 0.86 7.46 -2.39 -0.02 0.84 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.42 0.92 8.47 -92.71 -0.79 0.13 16 40 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.12 0.39 7.88 -2.39 -0.02 0.37 16 42 H 0.08 1.76 7.31 -2.39 -0.02 1.74 16 43 H 0.11 0.86 8.03 -2.39 -0.02 0.84 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 1.58 8.00 -2.39 -0.02 1.57 16 48 H 0.05 1.43 7.96 -2.38 -0.02 1.41 16 Total: -1.00 -91.11 410.07 1.40 -89.70 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.16 Total: 12.02 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.46 Total: -3.82 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -4.99 Total: -87.26 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.10 Total: -46.46 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.16 kcal Total: -91.11 1.40 -89.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.806 kcal (2) G-P(sol) polarization free energy of solvation -91.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds