Wall clock time and date at job start Wed Apr 1 2020 00:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86798 * 120.00090 * 2 1 4 4 H 1.48494 * 109.47409 * 270.00478 * 3 2 1 5 5 H 1.48508 * 109.46954 * 30.00279 * 3 2 1 6 6 H 1.48497 * 109.47175 * 149.99845 * 3 2 1 7 7 C 1.38796 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99589 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00155 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47311 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99976 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99906 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99700 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.47130 * 324.99787 * 14 13 11 16 16 C 1.53006 * 109.47023 * 84.99299 * 14 13 11 17 17 C 1.53000 * 109.46846 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47345 * 300.00008 * 17 16 14 19 19 H 1.09002 * 109.47493 * 300.00298 * 18 17 16 20 20 C 1.53000 * 109.47345 * 180.02562 * 18 17 16 21 21 N 1.46499 * 109.46840 * 65.00000 * 20 18 17 22 22 C 1.34779 * 119.99872 * 180.02562 * 21 20 18 23 23 O 1.21278 * 120.00071 * 359.97438 * 22 21 20 24 24 C 1.50703 * 119.99944 * 180.02562 * 22 21 20 25 25 C 1.53004 * 117.49678 * 248.74915 * 24 22 21 26 26 C 1.52998 * 117.49715 * 180.08706 * 24 22 21 27 27 C 1.53006 * 109.47155 * 60.00181 * 18 17 16 28 28 C 1.52993 * 109.47015 * 204.99213 * 14 13 11 29 29 H 0.97005 * 120.00248 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47266 * 60.00034 * 10 9 7 31 31 H 1.09000 * 109.47057 * 300.00779 * 10 9 7 32 32 H 0.96996 * 119.99948 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.47241 * 300.00223 * 16 14 13 34 34 H 1.09002 * 109.46824 * 60.00121 * 16 14 13 35 35 H 1.09002 * 109.46642 * 180.02562 * 17 16 14 36 36 H 1.08993 * 109.46977 * 60.00690 * 17 16 14 37 37 H 1.09002 * 109.47398 * 185.00327 * 20 18 17 38 38 H 1.09001 * 109.47194 * 305.00507 * 20 18 17 39 39 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 40 40 H 1.09002 * 115.55038 * 34.41769 * 24 22 21 41 41 H 1.09001 * 117.49735 * 359.97438 * 25 24 22 42 42 H 1.09000 * 117.49966 * 145.02402 * 25 24 22 43 43 H 1.08997 * 117.50033 * 214.97609 * 26 24 22 44 44 H 1.08999 * 117.50073 * 359.97438 * 26 24 22 45 45 H 1.09002 * 109.46824 * 59.99708 * 27 18 17 46 46 H 1.09001 * 109.47241 * 179.97438 * 27 18 17 47 47 H 1.09002 * 109.47179 * 60.00402 * 28 14 13 48 48 H 1.09002 * 109.47493 * 300.00284 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 2.3303 -7.7151 -0.0008 15 1 1.4144 -7.7601 0.5883 16 6 2.0340 -8.1487 -1.4379 17 6 1.4980 -9.5817 -1.4380 18 6 2.5437 -10.5174 -0.8283 19 1 3.4596 -10.4720 -1.4176 20 6 2.0080 -11.9506 -0.8289 21 7 1.8376 -12.4075 -2.2104 22 6 1.3732 -13.6484 -2.4573 23 8 1.0969 -14.3870 -1.5358 24 6 1.1984 -14.1187 -3.8783 25 6 -0.2309 -14.3300 -4.3818 26 6 0.6655 -15.5368 -4.0926 27 6 2.8400 -10.0838 0.6088 28 6 3.3755 -8.6511 0.6091 29 1 -0.4851 0.8401 0.0004 30 1 3.1244 -3.7314 0.8895 31 1 3.1244 -3.7313 -0.8905 32 1 3.8008 -6.1835 -0.0004 33 1 1.2894 -7.4818 -1.8725 34 1 2.9500 -8.1037 -2.0271 35 1 1.2874 -9.8908 -2.4619 36 1 0.5822 -9.6271 -0.8488 37 1 2.7142 -12.6027 -0.3150 38 1 1.0469 -11.9794 -0.3156 39 1 2.0589 -11.8170 -2.9474 40 1 1.9329 -13.7439 -4.5912 41 1 -1.0447 -14.1293 -3.6850 42 1 -0.4366 -14.0947 -5.4260 43 1 1.0490 -16.0948 -4.9468 44 1 0.4418 -16.1297 -3.2059 45 1 1.9241 -10.1292 1.1981 46 1 3.5847 -10.7507 1.0434 47 1 3.5866 -8.3422 1.6329 48 1 4.2915 -8.6061 0.0199 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001060669139.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:35 Heat of formation + Delta-G solvation = -103.264721 kcal Electronic energy + Delta-G solvation = -26183.142839 eV Core-core repulsion = 22362.622462 eV Total energy + Delta-G solvation = -3820.520376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.22725 -40.82427 -39.33861 -37.19848 -36.26157 -34.69409 -34.57683 -32.00953 -31.72104 -30.07568 -27.70070 -26.96509 -24.56908 -23.77147 -23.31406 -22.32694 -21.58380 -21.29724 -20.64518 -19.77567 -18.47003 -17.79088 -17.52120 -17.03290 -16.88012 -16.60469 -16.33387 -15.99930 -15.84970 -15.51491 -15.19996 -14.99093 -14.74877 -14.68141 -14.53823 -13.84871 -13.66118 -13.57847 -13.47176 -13.22270 -13.16495 -13.04366 -12.88597 -12.60253 -12.45603 -12.10096 -12.05988 -11.82948 -11.70260 -11.54680 -11.47695 -11.40399 -11.21393 -11.14206 -10.91867 -10.82515 -10.27200 -10.11333 -10.01361 -8.66778 -8.34714 -6.12912 1.27594 1.42553 1.46793 1.47689 1.58003 1.63943 2.16082 2.26507 2.32008 2.92643 2.99510 3.32298 3.65491 3.67862 3.72421 3.78314 3.89382 3.97174 4.00140 4.05876 4.22463 4.24299 4.32596 4.37949 4.46071 4.46829 4.51529 4.54889 4.67177 4.74020 4.74664 4.84846 4.94459 4.98097 5.03144 5.12893 5.13337 5.21275 5.21896 5.24403 5.36491 5.41650 5.42498 5.50528 5.60730 6.19659 6.53442 6.56391 7.06596 7.22986 7.29680 8.74497 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.001607 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.647674 B =17422.103445 C =18035.892548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.709 5.709 14 C 0.142 3.858 15 H 0.055 0.945 16 C -0.124 4.124 17 C -0.107 4.107 18 C -0.085 4.085 19 H 0.102 0.898 20 C 0.126 3.874 21 N -0.712 5.712 22 C 0.533 3.467 23 O -0.592 6.592 24 C -0.198 4.198 25 C -0.147 4.147 26 C -0.154 4.154 27 C -0.107 4.107 28 C -0.113 4.113 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.416 0.584 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.416 0.584 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.818 -28.152 -8.046 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.362 5.362 14 C 0.037 3.963 15 H 0.074 0.926 16 C -0.163 4.163 17 C -0.145 4.145 18 C -0.103 4.103 19 H 0.120 0.880 20 C 0.002 3.998 21 N -0.364 5.364 22 C 0.321 3.679 23 O -0.473 6.473 24 C -0.219 4.219 25 C -0.185 4.185 26 C -0.192 4.192 27 C -0.145 4.145 28 C -0.151 4.151 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.253 0.747 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.253 0.747 40 H 0.171 0.829 41 H 0.102 0.898 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.511 -28.897 -7.363 31.301 hybrid contribution 1.580 1.812 -0.022 2.404 sum 11.091 -27.085 -7.385 30.185 Atomic orbital electron populations 1.70189 1.08004 1.28597 1.48026 1.26131 0.95951 1.03333 0.93718 0.84948 0.78199 0.75989 0.78808 1.19267 1.20356 1.18161 1.23212 0.95359 0.92019 1.58870 0.89883 1.85592 1.10719 0.99297 1.97051 1.23384 1.03465 0.94524 1.06731 1.20066 0.86316 0.86730 0.74972 1.90688 1.17533 1.86089 1.50226 1.45856 1.10174 1.04978 1.75236 1.21095 0.98025 0.80135 0.97021 0.92627 1.21855 1.01612 0.96533 0.96251 1.21524 0.98078 0.93266 1.01623 1.21351 0.99422 0.91559 0.98000 0.88021 1.21379 1.00668 0.95092 0.82677 1.45888 1.66088 1.14806 1.09610 1.20254 0.75550 0.81425 0.90669 1.90682 1.52599 1.56209 1.47796 1.22318 1.01750 1.03568 0.94251 1.23034 0.90667 1.01461 1.03323 1.23009 1.02473 0.89799 1.03870 1.21445 1.01996 0.95532 0.95557 1.21720 0.97888 0.93669 1.01843 0.92013 0.87316 0.87214 0.74683 0.94581 0.89673 0.90432 0.93229 0.91463 0.93144 0.74678 0.82864 0.89813 0.85217 0.85553 0.89813 0.92334 0.89176 0.90732 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.03 13.22 21.65 0.29 -55.75 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.34 29.55 68.60 2.03 45.36 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 7 C -0.55 -31.13 9.50 67.95 0.65 -30.48 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 10 C -0.13 -5.06 6.16 71.23 0.44 -4.62 16 11 C 0.53 19.28 7.81 87.66 0.68 19.97 16 12 O -0.57 -26.21 15.52 -3.02 -0.05 -26.25 16 13 N -0.71 -16.73 5.08 -442.54 -2.25 -18.97 16 14 C 0.14 2.90 2.46 44.99 0.11 3.01 16 15 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 16 C -0.12 -2.31 5.50 30.60 0.17 -2.14 16 17 C -0.11 -1.52 5.08 30.59 0.16 -1.36 16 18 C -0.08 -0.83 2.22 -10.79 -0.02 -0.86 16 19 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 20 C 0.13 1.66 5.07 86.38 0.44 2.10 16 21 N -0.71 -8.58 5.28 -463.05 -2.45 -11.03 16 22 C 0.53 9.28 7.61 87.66 0.67 9.95 16 23 O -0.59 -15.93 16.26 -3.02 -0.05 -15.98 16 24 C -0.20 -2.12 6.19 -11.54 -0.07 -2.19 16 25 C -0.15 -1.44 10.24 30.62 0.31 -1.13 16 26 C -0.15 -1.71 10.05 30.62 0.31 -1.40 16 27 C -0.11 -1.13 5.20 30.58 0.16 -0.97 16 28 C -0.11 -1.36 5.39 30.58 0.16 -1.19 16 29 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 30 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 31 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 32 H 0.42 6.71 8.60 -92.71 -0.80 5.91 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 0.89 7.18 -2.39 -0.02 0.88 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.42 2.64 7.65 -92.71 -0.71 1.93 16 40 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 45 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -84.36 405.83 0.44 -83.92 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.54 Total: 18.49 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.62 Total: -10.10 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -4.41 Total: -85.75 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.10 Total: -42.23 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -84.36 0.44 -83.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060669139.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.348 kcal (2) G-P(sol) polarization free energy of solvation -84.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds