Wall clock time and date at job start Wed Apr 1 2020 00:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48500 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46961 * 299.99847 * 3 2 1 6 6 H 1.48500 * 109.47135 * 59.99969 * 3 2 1 7 7 C 1.38799 * 119.99487 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99600 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00432 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00075 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46995 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99830 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99760 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99735 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47000 * 185.84564 * 14 13 11 16 16 H 1.09004 * 109.70492 * 53.32421 * 15 14 13 17 17 C 1.53629 * 109.66296 * 173.91737 * 15 14 13 18 18 C 1.53045 * 109.24117 * 174.54991 * 17 15 14 19 19 C 1.53047 * 109.53561 * 298.51191 * 18 17 15 20 20 C 1.53188 * 109.31376 * 61.36727 * 19 18 17 21 21 N 1.46927 * 109.58866 * 292.97102 * 15 14 13 22 22 C 1.34773 * 120.62804 * 6.62473 * 21 15 14 23 23 O 1.21278 * 120.00254 * 354.06509 * 22 21 15 24 24 C 1.50708 * 120.00019 * 174.06754 * 22 21 15 25 25 C 1.53774 * 113.61498 * 180.02562 * 24 22 21 26 26 C 1.53772 * 87.17571 * 270.75839 * 25 24 22 27 27 C 1.53778 * 113.68969 * 82.46503 * 24 22 21 28 28 H 0.97007 * 120.00014 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47005 * 60.00076 * 10 9 7 30 30 H 1.08999 * 109.47049 * 299.99808 * 10 9 7 31 31 H 0.96996 * 120.00541 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.46918 * 65.84895 * 14 13 11 33 33 H 1.09001 * 109.47427 * 305.84979 * 14 13 11 34 34 H 1.08992 * 109.63203 * 54.56085 * 17 15 14 35 35 H 1.08996 * 109.45951 * 294.43140 * 17 15 14 36 36 H 1.08995 * 109.46024 * 178.49140 * 18 17 15 37 37 H 1.09000 * 109.44684 * 58.52071 * 18 17 15 38 38 H 1.08993 * 109.49865 * 301.41176 * 19 18 17 39 39 H 1.09007 * 109.51947 * 181.33103 * 19 18 17 40 40 H 1.09000 * 109.58902 * 185.57647 * 20 19 18 41 41 H 1.08996 * 109.70682 * 65.21883 * 20 19 18 42 42 H 1.09000 * 112.84883 * 311.19628 * 24 22 21 43 43 H 1.09000 * 113.61582 * 25.34880 * 25 24 22 44 44 H 1.09000 * 113.61409 * 156.16193 * 25 24 22 45 45 H 1.09001 * 113.61986 * 89.15677 * 26 25 24 46 46 H 1.08999 * 113.61874 * 220.06072 * 26 25 24 47 47 H 1.08998 * 113.61323 * 203.68069 * 27 24 22 48 48 H 1.08998 * 113.61551 * 334.49264 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0008 14 6 2.3300 -7.7151 -0.0008 15 6 3.4950 -8.6960 0.1466 16 1 4.0890 -8.4322 1.0217 17 6 2.9515 -10.1248 0.2999 18 6 4.1217 -11.1111 0.3099 19 6 4.8765 -11.0231 -1.0186 20 6 5.4383 -9.6082 -1.1894 21 7 4.3384 -8.6433 -1.0553 22 6 4.1109 -7.7238 -2.0140 23 8 3.1400 -7.0006 -1.9424 24 6 5.0630 -7.5943 -3.1750 25 6 4.6639 -6.5008 -4.1799 26 6 3.8432 -7.5773 -4.9094 27 6 4.8079 -8.6115 -4.2997 28 1 -0.4850 0.8401 0.0004 29 1 3.1243 -3.7314 0.8894 30 1 3.1243 -3.7315 -0.8905 31 1 3.8006 -6.1837 -0.0004 32 1 1.8092 -7.9080 -0.9387 33 1 1.6386 -7.8443 0.8319 34 1 2.2882 -10.3556 -0.5336 35 1 2.4001 -10.2050 1.2367 36 1 3.7419 -12.1237 0.4453 37 1 4.7975 -10.8641 1.1286 38 1 4.1951 -11.2455 -1.8396 39 1 5.6956 -11.7424 -1.0204 40 1 5.8910 -9.5114 -2.1762 41 1 6.1887 -9.4157 -0.4226 42 1 6.1060 -7.5406 -2.8631 43 1 4.0553 -5.7084 -3.7442 44 1 5.5007 -6.1187 -4.7646 45 1 2.8197 -7.6673 -4.5455 46 1 3.9029 -7.5104 -5.9957 47 1 5.6838 -8.8074 -4.9181 48 1 4.3169 -9.5236 -3.9604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001061958257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:48 Heat of formation + Delta-G solvation = -23.991902 kcal Electronic energy + Delta-G solvation = -28581.291529 eV Core-core repulsion = 24764.208680 eV Total energy + Delta-G solvation = -3817.082849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32586 -38.96673 -38.30720 -36.95403 -34.30837 -33.20964 -32.33493 -31.77280 -29.16818 -27.30465 -26.05611 -25.84844 -25.36835 -24.58199 -22.60295 -21.56426 -20.53185 -19.97380 -18.47747 -17.72405 -17.21390 -16.43210 -15.94961 -15.93978 -15.48311 -15.35210 -15.13516 -14.86845 -14.72380 -14.47817 -13.95462 -13.89581 -13.59435 -13.24371 -13.09189 -12.93700 -12.72171 -12.61196 -12.46952 -12.38682 -12.19422 -11.62730 -11.49317 -11.37289 -11.10801 -11.08818 -11.00510 -10.95120 -10.91106 -10.66908 -10.61628 -10.57122 -9.69333 -9.28852 -9.04724 -8.98492 -8.94165 -8.13598 -8.07808 -6.36278 -6.12230 -3.80596 2.47142 2.64660 3.22092 3.26975 3.34770 3.43829 3.51879 3.94667 4.12626 4.25962 4.30202 4.34891 4.39127 4.48012 4.48931 4.66307 4.69177 4.80132 4.86098 4.94758 5.05533 5.16771 5.22436 5.30789 5.32981 5.38759 5.44345 5.46389 5.47536 5.50193 5.60705 5.64225 5.70308 5.71915 5.84459 5.90229 5.92608 6.00670 6.09860 6.15544 6.21862 6.33234 6.40172 6.98858 7.18449 7.68874 8.05419 8.10960 8.44966 8.99730 9.32882 10.95297 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.002878 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.251927 B = 9727.737600 C =10794.845661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.071 0.929 9 S -0.061 6.061 10 C -0.148 4.148 11 C 0.538 3.462 12 O -0.529 6.529 13 N -0.704 5.704 14 C 0.137 3.863 15 C 0.136 3.864 16 H 0.078 0.922 17 C -0.128 4.128 18 C -0.118 4.118 19 C -0.135 4.135 20 C 0.110 3.890 21 N -0.615 5.615 22 C 0.512 3.488 23 O -0.487 6.487 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.139 4.139 27 C -0.125 4.125 28 H 0.266 0.734 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.388 0.612 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.363 -26.184 -4.474 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.680 4.680 8 H 0.089 0.911 9 S 0.166 5.834 10 C -0.299 4.299 11 C 0.324 3.676 12 O -0.405 6.405 13 N -0.357 5.357 14 C 0.013 3.987 15 C 0.033 3.967 16 H 0.096 0.904 17 C -0.167 4.167 18 C -0.156 4.156 19 C -0.174 4.174 20 C -0.013 4.013 21 N -0.351 5.351 22 C 0.299 3.701 23 O -0.360 6.360 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.177 4.177 27 C -0.162 4.162 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.221 0.779 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.651 -26.005 -4.446 29.704 hybrid contribution 2.702 1.208 -0.002 2.960 sum 16.353 -24.797 -4.448 30.035 Atomic orbital electron populations 1.70042 1.05915 1.27145 1.47284 1.24986 0.95010 0.98943 0.94754 0.86135 0.79587 0.82049 0.77819 1.19681 1.20627 1.20633 1.22929 0.94908 0.91871 1.58330 0.91069 1.85363 1.05353 0.96107 1.96626 1.23472 1.06106 0.96022 1.04282 1.19991 0.86438 0.85969 0.75230 1.90657 1.15456 1.85611 1.48745 1.45771 1.08980 1.05099 1.75821 1.21316 0.94351 0.80624 1.02458 1.21637 0.92008 0.95817 0.87271 0.90450 1.21965 0.98176 0.93281 1.03234 1.21501 0.97266 0.99444 0.97384 1.21922 1.00580 0.96363 0.98496 1.21713 0.88774 0.88139 1.02723 1.48056 1.32739 1.33787 1.20538 1.20188 0.86885 0.79896 0.83097 1.91004 1.27630 1.42816 1.74521 1.22442 0.99271 1.00472 0.93798 1.22760 1.00184 0.96975 0.96154 1.22892 0.99097 0.95768 0.99920 1.22880 1.00362 0.96774 0.96230 0.92365 0.89961 0.89658 0.77871 0.89918 0.91989 0.91019 0.90309 0.91434 0.91650 0.91405 0.90717 0.89507 0.91478 0.88782 0.89569 0.89677 0.89680 0.91383 0.89376 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.13 13.22 55.49 0.73 -26.39 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.90 9.50 30.94 0.29 -15.61 16 8 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 9 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 10 C -0.15 -3.35 6.16 36.01 0.22 -3.13 16 11 C 0.54 11.51 7.52 -10.99 -0.08 11.42 16 12 O -0.53 -13.47 15.85 5.56 0.09 -13.38 16 13 N -0.70 -11.29 3.13 -60.29 -0.19 -11.48 16 14 C 0.14 1.88 4.30 -4.04 -0.02 1.86 16 15 C 0.14 1.24 2.97 -67.37 -0.20 1.04 16 16 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.13 -0.91 5.40 -26.38 -0.14 -1.06 16 18 C -0.12 -0.61 5.88 -26.68 -0.16 -0.77 16 19 C -0.14 -0.63 6.08 -26.61 -0.16 -0.79 16 20 C 0.11 0.59 6.27 -3.71 -0.02 0.56 16 21 N -0.61 -5.20 2.97 -164.96 -0.49 -5.69 16 22 C 0.51 5.61 6.22 -10.98 -0.07 5.54 16 23 O -0.49 -7.45 9.41 5.56 0.05 -7.40 16 24 C -0.14 -1.18 2.92 -90.96 -0.27 -1.45 16 25 C -0.12 -1.25 7.45 -25.93 -0.19 -1.44 16 26 C -0.14 -1.33 7.75 -25.80 -0.20 -1.53 16 27 C -0.12 -0.89 6.86 -25.80 -0.18 -1.07 16 28 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.08 1.72 8.14 -51.92 -0.42 1.29 16 30 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 31 H 0.39 5.44 7.62 -40.82 -0.31 5.13 16 32 H 0.08 1.35 6.50 -51.93 -0.34 1.01 16 33 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.39 5.52 -51.93 -0.29 0.10 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.64 7.74 -51.93 -0.40 0.24 16 43 H 0.09 1.16 7.43 -51.93 -0.39 0.77 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -37.19 387.87 -10.49 -47.68 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.03 Total: 2.03 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.27 Total: -4.37 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.06 Total: -43.56 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.14 Total: -20.78 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.19 -10.49 -47.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061958257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.690 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds