Wall clock time and date at job start Wed Apr 1 2020 00:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48500 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46961 * 299.99847 * 3 2 1 6 6 H 1.48500 * 109.47135 * 59.99969 * 3 2 1 7 7 C 1.38799 * 119.99487 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99600 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00432 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00075 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46995 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99830 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99760 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99735 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47000 * 185.84564 * 14 13 11 16 16 H 1.09004 * 109.70492 * 53.32421 * 15 14 13 17 17 C 1.53629 * 109.66296 * 173.91737 * 15 14 13 18 18 C 1.53045 * 109.24117 * 174.54991 * 17 15 14 19 19 C 1.53047 * 109.53561 * 298.51191 * 18 17 15 20 20 C 1.53188 * 109.31376 * 61.36727 * 19 18 17 21 21 N 1.46927 * 109.58866 * 292.97102 * 15 14 13 22 22 C 1.34773 * 120.62804 * 6.62473 * 21 15 14 23 23 O 1.21278 * 120.00254 * 354.06509 * 22 21 15 24 24 C 1.50708 * 120.00019 * 174.06754 * 22 21 15 25 25 C 1.53774 * 113.61498 * 180.02562 * 24 22 21 26 26 C 1.53772 * 87.17571 * 270.75839 * 25 24 22 27 27 C 1.53778 * 113.68969 * 82.46503 * 24 22 21 28 28 H 0.97007 * 120.00014 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47005 * 60.00076 * 10 9 7 30 30 H 1.08999 * 109.47049 * 299.99808 * 10 9 7 31 31 H 0.96996 * 120.00541 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.46918 * 65.84895 * 14 13 11 33 33 H 1.09001 * 109.47427 * 305.84979 * 14 13 11 34 34 H 1.08992 * 109.63203 * 54.56085 * 17 15 14 35 35 H 1.08996 * 109.45951 * 294.43140 * 17 15 14 36 36 H 1.08995 * 109.46024 * 178.49140 * 18 17 15 37 37 H 1.09000 * 109.44684 * 58.52071 * 18 17 15 38 38 H 1.08993 * 109.49865 * 301.41176 * 19 18 17 39 39 H 1.09007 * 109.51947 * 181.33103 * 19 18 17 40 40 H 1.09000 * 109.58902 * 185.57647 * 20 19 18 41 41 H 1.08996 * 109.70682 * 65.21883 * 20 19 18 42 42 H 1.09000 * 112.84883 * 311.19628 * 24 22 21 43 43 H 1.09000 * 113.61582 * 25.34880 * 25 24 22 44 44 H 1.09000 * 113.61409 * 156.16193 * 25 24 22 45 45 H 1.09001 * 113.61986 * 89.15677 * 26 25 24 46 46 H 1.08999 * 113.61874 * 220.06072 * 26 25 24 47 47 H 1.08998 * 113.61323 * 203.68069 * 27 24 22 48 48 H 1.08998 * 113.61551 * 334.49264 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0008 14 6 2.3300 -7.7151 -0.0008 15 6 3.4950 -8.6960 0.1466 16 1 4.0890 -8.4322 1.0217 17 6 2.9515 -10.1248 0.2999 18 6 4.1217 -11.1111 0.3099 19 6 4.8765 -11.0231 -1.0186 20 6 5.4383 -9.6082 -1.1894 21 7 4.3384 -8.6433 -1.0553 22 6 4.1109 -7.7238 -2.0140 23 8 3.1400 -7.0006 -1.9424 24 6 5.0630 -7.5943 -3.1750 25 6 4.6639 -6.5008 -4.1799 26 6 3.8432 -7.5773 -4.9094 27 6 4.8079 -8.6115 -4.2997 28 1 -0.4850 0.8401 0.0004 29 1 3.1243 -3.7314 0.8894 30 1 3.1243 -3.7315 -0.8905 31 1 3.8006 -6.1837 -0.0004 32 1 1.8092 -7.9080 -0.9387 33 1 1.6386 -7.8443 0.8319 34 1 2.2882 -10.3556 -0.5336 35 1 2.4001 -10.2050 1.2367 36 1 3.7419 -12.1237 0.4453 37 1 4.7975 -10.8641 1.1286 38 1 4.1951 -11.2455 -1.8396 39 1 5.6956 -11.7424 -1.0204 40 1 5.8910 -9.5114 -2.1762 41 1 6.1887 -9.4157 -0.4226 42 1 6.1060 -7.5406 -2.8631 43 1 4.0553 -5.7084 -3.7442 44 1 5.5007 -6.1187 -4.7646 45 1 2.8197 -7.6673 -4.5455 46 1 3.9029 -7.5104 -5.9957 47 1 5.6838 -8.8074 -4.9181 48 1 4.3169 -9.5236 -3.9604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001061958257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:47 Heat of formation + Delta-G solvation = -48.578503 kcal Electronic energy + Delta-G solvation = -28582.357684 eV Core-core repulsion = 24764.208680 eV Total energy + Delta-G solvation = -3818.149004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17133 -40.32655 -39.24384 -37.80281 -35.60606 -34.60340 -33.85359 -32.81151 -30.73480 -28.13682 -27.70072 -26.88886 -26.53722 -25.29801 -23.38826 -22.26935 -21.75270 -20.99677 -19.90873 -19.11620 -18.19229 -17.52794 -17.25312 -17.15094 -16.90048 -16.56875 -16.31853 -15.90533 -15.81640 -15.67862 -15.26036 -14.76205 -14.60663 -14.50339 -14.33115 -14.13401 -13.91178 -13.59307 -13.30364 -13.27467 -13.17913 -13.17165 -12.92177 -12.89509 -12.60064 -12.18275 -11.93080 -11.83248 -11.73453 -11.58363 -11.49046 -11.32929 -11.29920 -11.17232 -10.88444 -10.29461 -10.11459 -9.97496 -9.33263 -8.68542 -8.35884 -6.14663 1.25902 1.40162 1.45587 1.56447 1.60555 1.82885 1.94578 2.25826 2.42131 2.97530 3.32300 3.40110 3.57427 3.66584 3.76777 3.87536 3.91432 3.94377 4.05020 4.15403 4.20171 4.22982 4.25851 4.30336 4.44432 4.50532 4.64806 4.66844 4.73659 4.81071 4.82380 4.87776 4.95823 4.99403 5.01878 5.09202 5.13874 5.18758 5.20159 5.25165 5.39189 5.45800 5.48546 5.55729 5.67242 6.18295 6.45648 6.57400 7.04304 7.29728 7.37134 8.74025 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.002878 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.251927 B = 9727.737600 C =10794.845661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.003 2.997 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.080 0.920 9 S -0.151 6.151 10 C -0.121 4.121 11 C 0.534 3.466 12 O -0.580 6.580 13 N -0.673 5.673 14 C 0.139 3.861 15 C 0.143 3.857 16 H 0.096 0.904 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.132 4.132 20 C 0.104 3.896 21 N -0.608 5.608 22 C 0.506 3.494 23 O -0.545 6.545 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.149 4.149 27 C -0.103 4.103 28 H 0.272 0.728 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.401 0.599 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.041 0.959 44 H 0.108 0.892 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.121 0.879 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.897 -27.789 -4.401 35.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.824 3.176 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.694 4.694 8 H 0.098 0.902 9 S 0.077 5.923 10 C -0.273 4.273 11 C 0.320 3.680 12 O -0.460 6.460 13 N -0.324 5.324 14 C 0.016 3.984 15 C 0.040 3.960 16 H 0.114 0.886 17 C -0.163 4.163 18 C -0.152 4.152 19 C -0.170 4.170 20 C -0.018 4.018 21 N -0.343 5.343 22 C 0.295 3.705 23 O -0.422 6.422 24 C -0.153 4.153 25 C -0.167 4.167 26 C -0.186 4.186 27 C -0.140 4.140 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.237 0.763 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.143 0.857 43 H 0.060 0.940 44 H 0.126 0.874 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.139 0.861 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.267 -27.694 -4.363 33.462 hybrid contribution 1.302 1.563 -0.061 2.035 sum 19.569 -26.132 -4.424 32.945 Atomic orbital electron populations 1.70207 1.08040 1.28589 1.48000 1.26194 0.96043 1.03432 0.93645 0.84849 0.78491 0.75984 0.78231 1.18067 1.19778 1.19581 1.23223 0.95230 0.92007 1.58957 0.90210 1.85557 1.10660 0.99156 1.96976 1.23279 1.03290 0.95106 1.05594 1.19834 0.86204 0.86516 0.75433 1.90632 1.17522 1.86152 1.51719 1.45523 1.08959 1.04993 1.72933 1.21354 0.96396 0.80193 1.00495 1.21580 0.90640 0.95559 0.88248 0.88578 1.21955 0.99101 0.92405 1.02869 1.21500 0.96404 0.99013 0.98252 1.21921 1.01073 0.96353 0.97658 1.22040 0.87863 0.87486 1.04383 1.48167 1.33072 1.33603 1.19445 1.20731 0.86430 0.79524 0.83855 1.90995 1.29981 1.45240 1.75998 1.22417 0.99922 1.00076 0.92912 1.22805 1.00447 0.96272 0.97219 1.22868 0.97863 0.97311 1.00605 1.22847 1.00421 0.95604 0.95153 0.91934 0.87786 0.88809 0.76344 0.92861 0.92893 0.92581 0.89855 0.90527 0.90445 0.92428 0.88238 0.87991 0.89535 0.85707 0.93966 0.87410 0.93275 0.90256 0.86122 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.48 13.22 21.65 0.29 -58.20 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 45.51 29.55 68.60 2.03 47.54 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -33.28 9.50 67.95 0.65 -32.64 16 8 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 9 S -0.15 -9.16 20.57 -56.49 -1.16 -10.32 16 10 C -0.12 -5.65 6.16 71.24 0.44 -5.21 16 11 C 0.53 23.93 7.52 87.66 0.66 24.59 16 12 O -0.58 -31.51 15.85 -3.02 -0.05 -31.56 16 13 N -0.67 -22.15 3.13 -463.06 -1.45 -23.60 16 14 C 0.14 3.99 4.30 86.38 0.37 4.36 16 15 C 0.14 2.43 2.97 45.12 0.13 2.57 16 16 H 0.10 1.35 8.14 -2.38 -0.02 1.34 16 17 C -0.12 -1.61 5.40 30.82 0.17 -1.44 16 18 C -0.11 -0.80 5.88 30.62 0.18 -0.62 16 19 C -0.13 -0.71 6.08 30.67 0.19 -0.52 16 20 C 0.10 0.68 6.27 86.36 0.54 1.22 16 21 N -0.61 -9.06 2.97 -794.21 -2.36 -11.42 16 22 C 0.51 10.77 6.22 87.66 0.55 11.31 16 23 O -0.55 -17.57 9.41 -3.02 -0.03 -17.60 16 24 C -0.13 -1.99 2.92 -11.01 -0.03 -2.02 16 25 C -0.13 -2.60 7.45 31.12 0.23 -2.37 16 26 C -0.15 -2.85 7.75 31.20 0.24 -2.61 16 27 C -0.10 -1.19 6.86 31.20 0.21 -0.97 16 28 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 29 H 0.10 4.34 8.14 -2.40 -0.02 4.32 16 30 H 0.09 4.18 8.14 -2.40 -0.02 4.16 16 31 H 0.40 11.06 7.62 -92.71 -0.71 10.36 16 32 H 0.05 1.89 6.50 -2.39 -0.02 1.87 16 33 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 36 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.10 0.41 5.52 -2.39 -0.01 0.40 16 41 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.13 1.15 7.74 -2.39 -0.02 1.14 16 43 H 0.04 1.22 7.43 -2.39 -0.02 1.20 16 44 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.05 1.28 8.09 -2.39 -0.02 1.26 16 46 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.12 0.70 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.81 8.10 -2.39 -0.02 0.80 16 Total: -1.00 -88.03 387.87 2.51 -85.52 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.25 Total: 22.83 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.99 Total: -3.20 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -3.52 Total: -93.21 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.08 Total: -49.16 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.16 Total: -10.32 kcal Total: -88.03 2.51 -85.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061958257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.940 kcal (2) G-P(sol) polarization free energy of solvation -88.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds