Wall clock time and date at job start Wed Apr 1 2020 00:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48498 * 109.46716 * 269.99594 * 3 2 1 5 5 H 1.48503 * 109.47047 * 29.99633 * 3 2 1 6 6 H 1.48496 * 109.46969 * 150.00004 * 3 2 1 7 7 C 1.38800 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00205 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99805 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47357 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99738 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00141 * 180.02562 * 11 10 9 14 14 C 1.46922 * 120.62810 * 354.39952 * 13 11 10 15 15 C 1.53190 * 108.77800 * 233.63038 * 14 13 11 16 16 C 1.53038 * 109.31092 * 305.37110 * 15 14 13 17 17 C 1.53039 * 109.54300 * 61.36453 * 16 15 14 18 18 C 1.46988 * 120.61396 * 174.42613 * 13 11 10 19 19 H 1.08999 * 109.58172 * 246.14760 * 18 13 11 20 20 C 1.53003 * 109.63016 * 6.59523 * 18 13 11 21 21 N 1.46499 * 109.47131 * 292.70354 * 20 18 13 22 22 C 1.34780 * 120.00088 * 185.82757 * 21 20 18 23 23 O 1.21286 * 119.99614 * 359.97438 * 22 21 20 24 24 C 1.50693 * 120.00091 * 179.97438 * 22 21 20 25 25 C 1.53005 * 109.47079 * 179.97438 * 24 22 21 26 26 C 1.52996 * 117.49796 * 243.62131 * 25 24 22 27 27 C 1.52998 * 60.00155 * 252.51053 * 26 25 24 28 28 H 0.96995 * 120.00134 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47099 * 59.99516 * 10 9 7 30 30 H 1.08995 * 109.46977 * 299.99524 * 10 9 7 31 31 H 1.09003 * 109.58598 * 113.84570 * 14 13 11 32 32 H 1.08998 * 109.59217 * 353.42017 * 14 13 11 33 33 H 1.09000 * 109.49928 * 185.41733 * 15 14 13 34 34 H 1.08999 * 109.52614 * 65.33220 * 15 14 13 35 35 H 1.09001 * 109.46071 * 301.34086 * 16 15 14 36 36 H 1.08999 * 109.45993 * 181.38384 * 16 15 14 37 37 H 1.08999 * 109.49848 * 58.58419 * 17 16 15 38 38 H 1.08998 * 109.50246 * 178.65282 * 17 16 15 39 39 H 1.08997 * 109.47060 * 52.70523 * 20 18 13 40 40 H 1.09006 * 109.47058 * 172.70174 * 20 18 13 41 41 H 0.96999 * 120.00191 * 5.82317 * 21 20 18 42 42 H 1.09005 * 109.47060 * 299.99959 * 24 22 21 43 43 H 1.08999 * 109.47467 * 59.99956 * 24 22 21 44 44 H 1.08997 * 115.54606 * 29.33288 * 25 24 22 45 45 H 1.09002 * 117.49858 * 0.02562 * 26 25 24 46 46 H 1.09001 * 117.49819 * 145.02486 * 26 25 24 47 47 H 1.08998 * 117.50047 * 252.51311 * 27 26 25 48 48 H 1.09003 * 117.51855 * 107.47813 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2324 0.0026 12 8 6.3442 -2.2961 0.0014 13 7 6.0459 -4.4945 0.0030 14 6 5.1301 -5.6368 0.1268 15 6 5.5973 -6.5199 1.2880 16 6 7.0615 -6.9087 1.0707 17 6 7.9276 -5.6473 1.0444 18 6 7.4874 -4.7540 -0.1197 19 1 7.6885 -5.2593 -1.0644 20 6 8.2540 -3.4309 -0.0692 21 7 7.9490 -2.6437 -1.2665 22 6 8.6024 -1.4877 -1.4975 23 8 9.4424 -1.0989 -0.7138 24 6 8.2891 -0.6784 -2.7294 25 6 9.1632 0.5773 -2.7507 26 6 8.4565 1.9315 -2.6646 27 6 9.0788 1.4760 -3.9860 28 1 -0.4850 0.8400 -0.0004 29 1 3.6440 -3.4321 -0.8873 30 1 3.6435 -3.4308 0.8927 31 1 5.1389 -6.2140 -0.7978 32 1 4.1208 -5.2762 0.3251 33 1 4.9842 -7.4202 1.3300 34 1 5.5020 -5.9707 2.2246 35 1 7.1601 -7.4368 0.1223 36 1 7.3893 -7.5574 1.8830 37 1 7.8104 -5.1058 1.9831 38 1 8.9731 -5.9265 0.9136 39 1 7.9566 -2.8723 0.8183 40 1 9.3246 -3.6324 -0.0297 41 1 7.2770 -2.9545 -1.8931 42 1 8.4902 -1.2767 -3.6181 43 1 7.2383 -0.3889 -2.7165 44 1 10.1329 0.4832 -2.2620 45 1 7.3689 1.9279 -2.5925 46 1 8.9612 2.7288 -2.1191 47 1 9.9929 1.9735 -4.3098 48 1 8.4008 1.1725 -4.7838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062018653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:41 Heat of formation + Delta-G solvation = -25.330880 kcal Electronic energy + Delta-G solvation = -28440.964188 eV Core-core repulsion = 24623.823276 eV Total energy + Delta-G solvation = -3817.140912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79463 -39.14930 -37.33272 -36.93340 -34.67925 -33.05409 -32.47370 -31.86702 -29.47338 -29.14095 -26.46260 -25.63373 -24.54623 -22.43802 -22.29444 -21.37700 -20.77047 -19.88945 -19.16874 -17.71829 -17.14276 -16.47733 -16.17575 -15.99648 -15.36319 -15.23937 -15.01164 -14.85717 -14.58075 -14.30043 -13.98619 -13.85410 -13.57631 -13.41097 -13.19076 -12.97009 -12.81496 -12.70554 -12.36817 -12.18486 -11.91131 -11.45028 -11.42425 -11.34645 -11.29424 -11.22103 -11.04788 -10.93342 -10.85062 -10.62433 -10.28873 -9.92990 -9.88619 -9.50278 -9.04712 -8.96149 -8.87028 -8.52621 -8.21556 -6.95606 -6.32659 -4.04477 2.63382 2.80175 3.08525 3.14463 3.29149 3.47193 3.47874 3.55108 3.90861 4.28881 4.35312 4.52815 4.59453 4.69000 4.76041 4.82226 4.90085 4.95428 4.99545 5.00807 5.06661 5.13190 5.23221 5.24003 5.39888 5.47765 5.56810 5.60222 5.62496 5.66870 5.68710 5.68799 5.71702 5.78590 5.79016 5.81299 5.95346 5.99533 6.03272 6.18371 6.19273 6.39239 6.53841 6.78158 7.39746 7.81691 7.90303 8.37497 8.39897 8.61992 9.13704 10.76608 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006638 B = 0.005402 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4217.203485 B = 5181.549263 C = 8985.271809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.855 3.145 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.087 0.913 9 S -0.140 6.140 10 C -0.122 4.122 11 C 0.517 3.483 12 O -0.490 6.490 13 N -0.618 5.618 14 C 0.109 3.891 15 C -0.137 4.137 16 C -0.117 4.117 17 C -0.128 4.128 18 C 0.138 3.862 19 H 0.075 0.925 20 C 0.135 3.865 21 N -0.694 5.694 22 C 0.524 3.476 23 O -0.554 6.554 24 C -0.111 4.111 25 C -0.135 4.135 26 C -0.177 4.177 27 C -0.184 4.184 28 H 0.271 0.729 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.393 0.607 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.834 -13.013 -4.161 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.680 3.320 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.105 0.895 9 S 0.087 5.913 10 C -0.273 4.273 11 C 0.305 3.695 12 O -0.362 6.362 13 N -0.356 5.356 14 C -0.014 4.014 15 C -0.175 4.175 16 C -0.154 4.154 17 C -0.167 4.167 18 C 0.034 3.966 19 H 0.093 0.907 20 C 0.011 3.989 21 N -0.345 5.345 22 C 0.311 3.689 23 O -0.433 6.433 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.214 4.214 27 C -0.221 4.221 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.227 0.773 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.133 0.867 45 H 0.115 0.885 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.395 -11.231 -3.586 21.014 hybrid contribution -1.473 -0.605 -0.250 1.612 sum 15.922 -11.835 -3.836 20.206 Atomic orbital electron populations 1.69934 1.05925 1.27779 1.48022 1.24698 0.94416 0.98900 0.93162 0.86759 0.81955 0.83379 0.79894 1.19246 1.19945 1.15933 1.22306 0.88359 0.97443 1.58837 0.89502 1.84787 1.09179 0.99951 1.97399 1.23344 0.94414 1.04200 1.05298 1.20351 0.90580 0.82169 0.76435 1.90894 1.56612 1.42425 1.46307 1.48129 1.06304 1.05933 1.75241 1.21733 0.93951 0.87356 0.98397 1.21937 0.96601 0.99863 0.99138 1.21485 0.94866 0.96980 1.02102 1.21893 0.99789 0.96208 0.98807 1.21468 0.80426 0.95980 0.98731 0.90749 1.21377 0.97043 0.89392 0.91082 1.45769 1.40896 1.23255 1.24539 1.20255 0.80675 0.80713 0.87278 1.90628 1.34591 1.69572 1.48502 1.21195 1.01669 0.95723 0.96538 1.21999 1.01327 0.90327 1.01735 1.23039 1.00481 0.97896 1.00000 1.22983 1.02960 1.04410 0.91757 0.91929 0.88887 0.88845 0.91438 0.89126 0.90646 0.91222 0.91772 0.91537 0.90945 0.90609 0.89399 0.92182 0.77294 0.89294 0.88409 0.86720 0.88485 0.88953 0.89007 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.20 13.97 55.49 0.78 -25.43 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.55 27.74 -169.99 -4.72 16.83 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16 8 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 9 S -0.14 -3.37 18.55 -107.50 -1.99 -5.36 16 10 C -0.12 -2.20 4.57 36.01 0.16 -2.04 16 11 C 0.52 8.17 7.00 -10.98 -0.08 8.09 16 12 O -0.49 -9.06 9.52 5.55 0.05 -9.01 16 13 N -0.62 -7.12 2.97 -165.17 -0.49 -7.62 16 14 C 0.11 0.99 6.33 -3.71 -0.02 0.96 16 15 C -0.14 -1.05 6.08 -26.61 -0.16 -1.21 16 16 C -0.12 -0.80 5.88 -26.69 -0.16 -0.95 16 17 C -0.13 -1.05 5.37 -26.61 -0.14 -1.19 16 18 C 0.14 1.38 2.95 -67.56 -0.20 1.18 16 19 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 20 C 0.13 1.77 4.29 -4.04 -0.02 1.75 16 21 N -0.69 -9.68 3.13 -60.29 -0.19 -9.87 16 22 C 0.52 8.36 7.51 -10.99 -0.08 8.28 16 23 O -0.55 -10.80 15.55 5.55 0.09 -10.71 16 24 C -0.11 -1.47 5.98 -27.88 -0.17 -1.64 16 25 C -0.14 -1.80 5.41 -90.62 -0.49 -2.29 16 26 C -0.18 -2.32 10.18 -26.73 -0.27 -2.59 16 27 C -0.18 -2.03 10.25 -26.73 -0.27 -2.30 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.09 1.57 8.12 -51.92 -0.42 1.15 16 30 H 0.09 1.63 7.46 -51.92 -0.39 1.24 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.89 5.96 -51.93 -0.31 0.58 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.47 6.49 -51.93 -0.34 1.13 16 40 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.39 4.98 7.64 -40.82 -0.31 4.67 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 1.36 7.87 -51.93 -0.41 0.95 16 44 H 0.11 1.67 7.30 -51.93 -0.38 1.29 16 45 H 0.10 1.34 8.03 -51.93 -0.42 0.93 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -34.00 390.77 -10.32 -44.32 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.04 Total: 6.54 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.69 Total: -5.58 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.10 Total: -42.91 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.14 Total: -19.72 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.83 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.00 -10.32 -44.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062018653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.989 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds