Wall clock time and date at job start Wed Apr 1 2020 00:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48498 * 109.46716 * 269.99594 * 3 2 1 5 5 H 1.48503 * 109.47047 * 29.99633 * 3 2 1 6 6 H 1.48496 * 109.46969 * 150.00004 * 3 2 1 7 7 C 1.38800 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00205 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99805 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47357 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99738 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00141 * 180.02562 * 11 10 9 14 14 C 1.46922 * 120.62810 * 354.39952 * 13 11 10 15 15 C 1.53190 * 108.77800 * 233.63038 * 14 13 11 16 16 C 1.53038 * 109.31092 * 305.37110 * 15 14 13 17 17 C 1.53039 * 109.54300 * 61.36453 * 16 15 14 18 18 C 1.46988 * 120.61396 * 174.42613 * 13 11 10 19 19 H 1.08999 * 109.58172 * 246.14760 * 18 13 11 20 20 C 1.53003 * 109.63016 * 6.59523 * 18 13 11 21 21 N 1.46499 * 109.47131 * 292.70354 * 20 18 13 22 22 C 1.34780 * 120.00088 * 185.82757 * 21 20 18 23 23 O 1.21286 * 119.99614 * 359.97438 * 22 21 20 24 24 C 1.50693 * 120.00091 * 179.97438 * 22 21 20 25 25 C 1.53005 * 109.47079 * 179.97438 * 24 22 21 26 26 C 1.52996 * 117.49796 * 243.62131 * 25 24 22 27 27 C 1.52998 * 60.00155 * 252.51053 * 26 25 24 28 28 H 0.96995 * 120.00134 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47099 * 59.99516 * 10 9 7 30 30 H 1.08995 * 109.46977 * 299.99524 * 10 9 7 31 31 H 1.09003 * 109.58598 * 113.84570 * 14 13 11 32 32 H 1.08998 * 109.59217 * 353.42017 * 14 13 11 33 33 H 1.09000 * 109.49928 * 185.41733 * 15 14 13 34 34 H 1.08999 * 109.52614 * 65.33220 * 15 14 13 35 35 H 1.09001 * 109.46071 * 301.34086 * 16 15 14 36 36 H 1.08999 * 109.45993 * 181.38384 * 16 15 14 37 37 H 1.08999 * 109.49848 * 58.58419 * 17 16 15 38 38 H 1.08998 * 109.50246 * 178.65282 * 17 16 15 39 39 H 1.08997 * 109.47060 * 52.70523 * 20 18 13 40 40 H 1.09006 * 109.47058 * 172.70174 * 20 18 13 41 41 H 0.96999 * 120.00191 * 5.82317 * 21 20 18 42 42 H 1.09005 * 109.47060 * 299.99959 * 24 22 21 43 43 H 1.08999 * 109.47467 * 59.99956 * 24 22 21 44 44 H 1.08997 * 115.54606 * 29.33288 * 25 24 22 45 45 H 1.09002 * 117.49858 * 0.02562 * 26 25 24 46 46 H 1.09001 * 117.49819 * 145.02486 * 26 25 24 47 47 H 1.08998 * 117.50047 * 252.51311 * 27 26 25 48 48 H 1.09003 * 117.51855 * 107.47813 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2324 0.0026 12 8 6.3442 -2.2961 0.0014 13 7 6.0459 -4.4945 0.0030 14 6 5.1301 -5.6368 0.1268 15 6 5.5973 -6.5199 1.2880 16 6 7.0615 -6.9087 1.0707 17 6 7.9276 -5.6473 1.0444 18 6 7.4874 -4.7540 -0.1197 19 1 7.6885 -5.2593 -1.0644 20 6 8.2540 -3.4309 -0.0692 21 7 7.9490 -2.6437 -1.2665 22 6 8.6024 -1.4877 -1.4975 23 8 9.4424 -1.0989 -0.7138 24 6 8.2891 -0.6784 -2.7294 25 6 9.1632 0.5773 -2.7507 26 6 8.4565 1.9315 -2.6646 27 6 9.0788 1.4760 -3.9860 28 1 -0.4850 0.8400 -0.0004 29 1 3.6440 -3.4321 -0.8873 30 1 3.6435 -3.4308 0.8927 31 1 5.1389 -6.2140 -0.7978 32 1 4.1208 -5.2762 0.3251 33 1 4.9842 -7.4202 1.3300 34 1 5.5020 -5.9707 2.2246 35 1 7.1601 -7.4368 0.1223 36 1 7.3893 -7.5574 1.8830 37 1 7.8104 -5.1058 1.9831 38 1 8.9731 -5.9265 0.9136 39 1 7.9566 -2.8723 0.8183 40 1 9.3246 -3.6324 -0.0297 41 1 7.2770 -2.9545 -1.8931 42 1 8.4902 -1.2767 -3.6181 43 1 7.2383 -0.3889 -2.7165 44 1 10.1329 0.4832 -2.2620 45 1 7.3689 1.9279 -2.5925 46 1 8.9612 2.7288 -2.1191 47 1 9.9929 1.9735 -4.3098 48 1 8.4008 1.1725 -4.7838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062018653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:40 Heat of formation + Delta-G solvation = -46.225209 kcal Electronic energy + Delta-G solvation = -28441.870234 eV Core-core repulsion = 24623.823276 eV Total energy + Delta-G solvation = -3818.046958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.88350 -40.33080 -38.33980 -37.96136 -35.82399 -34.68263 -33.98865 -32.81691 -30.50450 -30.45055 -27.88422 -27.36239 -25.38904 -23.35720 -23.23954 -22.36757 -21.70361 -21.00519 -20.40922 -19.45580 -18.40405 -17.58779 -17.28162 -17.12692 -17.06863 -16.49585 -16.36503 -15.92446 -15.71405 -15.37018 -15.03279 -14.98682 -14.88156 -14.72253 -14.32066 -14.26048 -14.01334 -13.75033 -13.43647 -13.36401 -13.19750 -13.07812 -13.02920 -12.60310 -12.41814 -12.32694 -12.17107 -11.89992 -11.89594 -11.60988 -11.52539 -11.29772 -11.18431 -10.96094 -10.71045 -10.48721 -10.20732 -9.94988 -9.32279 -8.97515 -8.52885 -6.21745 0.98804 1.27629 1.44698 1.52630 1.54943 1.87819 2.07253 2.22251 2.41585 2.69760 2.85916 2.92806 3.44460 3.77541 3.82000 3.83899 3.85747 3.99381 4.04199 4.12435 4.19660 4.20861 4.22577 4.27484 4.44225 4.48576 4.58187 4.62590 4.70890 4.73879 4.76881 4.78398 4.85074 4.95480 5.01500 5.05008 5.07600 5.20672 5.24584 5.25061 5.34693 5.48160 5.59212 5.69311 5.70077 6.10552 6.30614 6.67964 6.93220 7.18743 7.43748 8.59700 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006638 B = 0.005402 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4217.203485 B = 5181.549263 C = 8985.271809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.049 3.951 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.242 1.242 7 C -0.527 4.527 8 H 0.061 0.939 9 S -0.170 6.170 10 C -0.106 4.106 11 C 0.520 3.480 12 O -0.523 6.523 13 N -0.605 5.605 14 C 0.101 3.899 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.125 4.125 18 C 0.144 3.856 19 H 0.105 0.895 20 C 0.137 3.863 21 N -0.684 5.684 22 C 0.513 3.487 23 O -0.599 6.599 24 C -0.105 4.105 25 C -0.151 4.151 26 C -0.197 4.197 27 C -0.154 4.154 28 H 0.276 0.724 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.401 0.599 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.127 -15.119 -5.634 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.156 4.156 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.166 1.166 7 C -0.675 4.675 8 H 0.079 0.921 9 S 0.057 5.943 10 C -0.257 4.257 11 C 0.307 3.693 12 O -0.399 6.399 13 N -0.341 5.341 14 C -0.021 4.021 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.164 4.164 18 C 0.041 3.959 19 H 0.123 0.877 20 C 0.013 3.987 21 N -0.333 5.333 22 C 0.301 3.699 23 O -0.481 6.481 24 C -0.144 4.144 25 C -0.170 4.170 26 C -0.234 4.234 27 C -0.190 4.190 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.236 0.764 42 H 0.140 0.860 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.127 0.873 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.664 -13.406 -5.068 23.532 hybrid contribution -1.860 -0.135 0.254 1.882 sum 16.805 -13.541 -4.814 22.112 Atomic orbital electron populations 1.70009 1.07259 1.28909 1.49350 1.25485 0.95154 1.01955 0.93022 0.85919 0.80520 0.79991 0.80236 1.18438 1.18690 1.16588 1.22476 0.90586 0.96479 1.57918 0.92099 1.84709 1.05973 1.06107 1.97508 1.23308 0.96828 0.99224 1.06343 1.19951 0.89121 0.83414 0.76842 1.90915 1.56778 1.43850 1.48364 1.48096 1.07600 1.05036 1.73342 1.22019 0.92877 0.86681 1.00488 1.21932 0.97821 1.00062 0.97438 1.21481 0.93518 0.96223 1.03636 1.21906 1.01373 0.96292 0.96831 1.21627 0.78627 0.94583 1.01083 0.87726 1.21323 0.97837 0.90308 0.89221 1.45744 1.40215 1.22742 1.24570 1.20810 0.80197 0.81156 0.87708 1.90599 1.36673 1.70695 1.50119 1.21196 1.00940 0.95770 0.96513 1.21961 1.00622 0.90559 1.03829 1.23078 0.99880 0.98072 1.02416 1.23078 1.03343 1.01858 0.90764 0.91441 0.87389 0.88268 0.88626 0.90097 0.88533 0.93073 0.89872 0.90334 0.92938 0.88669 0.93439 0.91625 0.76414 0.86028 0.89237 0.88396 0.89659 0.88928 0.87269 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.43 13.97 21.65 0.30 -55.13 16 2 C 0.05 2.86 5.50 84.86 0.47 3.33 16 3 Si 0.91 45.02 27.74 68.60 1.90 46.92 16 4 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.24 -12.11 6.74 99.48 0.67 -11.44 16 7 C -0.53 -30.10 10.04 67.95 0.68 -29.42 16 8 H 0.06 3.68 8.03 -2.91 -0.02 3.65 16 9 S -0.17 -8.27 18.55 -56.49 -1.05 -9.31 16 10 C -0.11 -3.78 4.57 71.24 0.33 -3.45 16 11 C 0.52 16.06 7.00 87.66 0.61 16.67 16 12 O -0.52 -19.53 9.52 -3.05 -0.03 -19.56 16 13 N -0.60 -12.70 2.97 -794.87 -2.36 -15.06 16 14 C 0.10 1.53 6.33 86.36 0.55 2.08 16 15 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 16 C -0.11 -1.07 5.88 30.62 0.18 -0.89 16 17 C -0.13 -1.71 5.37 30.67 0.16 -1.55 16 18 C 0.14 2.51 2.95 44.97 0.13 2.64 16 19 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 20 C 0.14 3.53 4.29 86.38 0.37 3.90 16 21 N -0.68 -18.68 3.13 -463.05 -1.45 -20.13 16 22 C 0.51 16.52 7.51 87.65 0.66 17.18 16 23 O -0.60 -24.13 15.55 -3.05 -0.05 -24.18 16 24 C -0.10 -2.69 5.98 29.85 0.18 -2.52 16 25 C -0.15 -3.99 5.41 -10.79 -0.06 -4.05 16 26 C -0.20 -5.17 10.18 30.59 0.31 -4.86 16 27 C -0.15 -3.10 10.25 30.59 0.31 -2.79 16 28 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.11 3.52 8.12 -2.39 -0.02 3.51 16 30 H 0.10 3.42 7.46 -2.40 -0.02 3.41 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.41 5.96 -2.39 -0.01 1.40 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 1.64 6.49 -2.39 -0.02 1.63 16 40 H 0.07 1.62 8.12 -2.38 -0.02 1.60 16 41 H 0.40 9.56 7.64 -92.71 -0.71 8.86 16 42 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.09 2.47 7.87 -2.39 -0.02 2.45 16 44 H 0.10 2.92 7.30 -2.39 -0.02 2.91 16 45 H 0.08 2.41 8.03 -2.39 -0.02 2.39 16 46 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -77.18 390.77 2.55 -74.64 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.21 Total: 26.99 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.07 Total: -5.17 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.51 Total: -90.31 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.08 Total: -43.74 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.05 Total: -9.31 kcal Total: -77.18 2.55 -74.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062018653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.411 kcal (2) G-P(sol) polarization free energy of solvation -77.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds