Wall clock time and date at job start Tue Mar 31 2020 22:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00259 * 2 1 4 4 H 1.48503 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46888 * 299.99796 * 3 2 1 6 6 H 1.48500 * 109.46724 * 59.99863 * 3 2 1 7 7 C 1.38806 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99670 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99895 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99625 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46546 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00306 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00274 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47384 * 174.96124 * 14 13 11 16 16 N 1.46504 * 112.90716 * 311.25471 * 15 14 13 17 17 C 1.34779 * 119.99808 * 285.05924 * 16 15 14 18 18 O 1.21278 * 119.99864 * 4.69669 * 17 16 15 19 19 C 1.50695 * 119.99950 * 184.70194 * 17 16 15 20 20 C 1.54270 * 110.03172 * 297.16522 * 19 17 16 21 21 C 1.54894 * 104.19390 * 217.10644 * 20 19 17 22 22 C 1.54893 * 102.75188 * 37.93742 * 21 20 19 23 23 C 1.53873 * 110.03452 * 179.97438 * 19 17 16 24 24 C 1.53778 * 113.61625 * 180.02562 * 15 14 13 25 25 C 1.53780 * 87.08016 * 220.01670 * 24 15 14 26 26 C 1.53777 * 113.61534 * 82.50619 * 15 14 13 27 27 H 0.97001 * 120.00316 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47128 * 60.00679 * 10 9 7 29 29 H 1.09000 * 109.46837 * 300.00031 * 10 9 7 30 30 H 0.97003 * 120.00213 * 0.02562 * 13 11 10 31 31 H 1.08995 * 109.47633 * 54.95590 * 14 13 11 32 32 H 1.09006 * 109.46868 * 294.95741 * 14 13 11 33 33 H 0.96997 * 120.00264 * 105.05023 * 16 15 14 34 34 H 1.09006 * 110.02066 * 58.60398 * 19 17 16 35 35 H 1.09004 * 110.48407 * 335.78087 * 20 19 17 36 36 H 1.08995 * 110.48914 * 98.42624 * 20 19 17 37 37 H 1.09006 * 110.75464 * 279.62592 * 21 20 19 38 38 H 1.08996 * 110.91417 * 156.32898 * 21 20 19 39 39 H 1.08992 * 110.49039 * 203.38055 * 22 21 20 40 40 H 1.08998 * 110.59564 * 80.78962 * 22 21 20 41 41 H 1.08991 * 110.03364 * 238.56891 * 23 19 17 42 42 H 1.08997 * 110.03120 * 0.02562 * 23 19 17 43 43 H 1.08995 * 113.61421 * 105.46497 * 24 15 14 44 44 H 1.09005 * 113.68772 * 334.57309 * 24 15 14 45 45 H 1.09008 * 113.61318 * 139.97818 * 25 24 15 46 46 H 1.08998 * 113.61563 * 270.88277 * 25 24 15 47 47 H 1.09000 * 113.61790 * 25.42817 * 26 15 14 48 48 H 1.09005 * 113.61701 * 254.52967 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0013 11 6 1.9872 -5.3027 0.0030 12 8 0.7910 -5.5023 0.0040 13 7 2.8439 -6.3432 0.0035 14 6 2.3302 -7.7151 0.0045 15 6 3.4970 -8.6968 -0.1219 16 7 4.4190 -8.3500 -1.2063 17 6 4.0677 -8.5760 -2.4877 18 8 2.9567 -8.9866 -2.7484 19 6 5.0554 -8.3187 -3.5964 20 6 5.4259 -6.8218 -3.6371 21 6 5.5637 -6.5056 -5.1472 22 6 4.4246 -7.3448 -5.7775 23 6 4.4189 -8.6518 -4.9571 24 6 3.0627 -10.1719 -0.1311 25 6 4.2902 -10.4572 0.7501 26 6 4.2000 -8.9933 1.2133 27 1 -0.4850 0.8400 -0.0004 28 1 3.1250 -3.7311 0.8908 29 1 3.1237 -3.7317 -0.8892 30 1 3.8008 -6.1836 0.0031 31 1 1.6500 -7.8491 -0.8365 32 1 1.7970 -7.9027 0.9366 33 1 5.2823 -7.9577 -1.0021 34 1 5.9509 -8.9218 -3.4458 35 1 4.6331 -6.2203 -3.1922 36 1 6.3714 -6.6486 -3.1233 37 1 6.5347 -6.8288 -5.5225 38 1 5.4117 -5.4432 -5.3377 39 1 4.6393 -7.5533 -6.8255 40 1 3.4693 -6.8290 -5.6801 41 1 5.0061 -9.4154 -5.4670 42 1 3.3955 -8.9991 -4.8157 43 1 3.1148 -10.6362 -1.1159 44 1 2.1127 -10.3519 0.3721 45 1 4.0994 -11.1791 1.5442 46 1 5.1933 -10.6803 0.1820 47 1 3.5610 -8.8495 2.0846 48 1 5.1700 -8.5063 1.3136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062579224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:47 Heat of formation + Delta-G solvation = -70.694482 kcal Electronic energy + Delta-G solvation = -27887.320623 eV Core-core repulsion = 24068.212598 eV Total energy + Delta-G solvation = -3819.108025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.11631 -39.30340 -38.59890 -36.95918 -34.22618 -33.42744 -32.42230 -30.07207 -29.38573 -28.88309 -27.20282 -26.13435 -25.45949 -23.35788 -22.16906 -20.97481 -20.34491 -19.72544 -19.44759 -17.92736 -17.66188 -16.63895 -16.32482 -16.07465 -15.55507 -15.32125 -15.15232 -14.90855 -14.80109 -14.60067 -13.92981 -13.81403 -13.74273 -13.46801 -13.24581 -12.88886 -12.66945 -12.59347 -12.09402 -11.94481 -11.71333 -11.63084 -11.35054 -11.34795 -11.25411 -11.17818 -11.07006 -11.03430 -11.01160 -10.75266 -10.74184 -10.65450 -9.80492 -9.80205 -9.42537 -9.21666 -9.07112 -8.80082 -8.21123 -6.48559 -6.20944 -3.91204 2.45535 2.76146 3.08063 3.16031 3.21582 3.28679 3.33511 3.72671 4.06331 4.17916 4.20868 4.25096 4.34615 4.42433 4.48167 4.53849 4.86653 5.04867 5.07670 5.14158 5.19009 5.20793 5.24202 5.32406 5.34164 5.40788 5.42729 5.50706 5.53604 5.55430 5.63842 5.71028 5.73536 5.75604 5.86023 5.88510 5.89061 5.90685 5.99841 6.08661 6.13685 6.14347 6.36419 6.67688 7.22826 7.60164 7.75279 8.03451 8.35868 8.67280 9.24286 10.86533 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.002995 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.869498 B = 9346.754393 C =11049.882187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.530 3.470 12 O -0.516 6.516 13 N -0.732 5.732 14 C 0.125 3.875 15 C 0.139 3.861 16 N -0.711 5.711 17 C 0.524 3.476 18 O -0.524 6.524 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.136 4.136 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.393 0.607 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.401 0.599 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.954 -21.404 -3.979 27.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.390 6.390 13 N -0.386 5.386 14 C -0.001 4.001 15 C 0.052 3.948 16 N -0.364 5.364 17 C 0.310 3.690 18 O -0.399 6.399 19 C -0.134 4.134 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.156 4.156 24 C -0.170 4.170 25 C -0.177 4.177 26 C -0.174 4.174 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.226 0.774 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.959 -21.963 -4.170 26.355 hybrid contribution 2.923 1.590 0.143 3.331 sum 16.882 -20.372 -4.027 26.763 Atomic orbital electron populations 1.70027 1.05951 1.27327 1.46925 1.24994 0.95016 0.99015 0.94577 0.86124 0.79561 0.81935 0.77907 1.19639 1.20570 1.20564 1.22906 0.94903 0.91689 1.58826 0.90941 1.85441 1.04921 0.96259 1.96681 1.23512 1.06505 0.95539 1.04666 1.20293 0.86571 0.86236 0.75310 1.90708 1.15367 1.85557 1.47417 1.45816 1.09551 1.05370 1.77886 1.21566 0.95325 0.80406 1.02784 1.21580 0.90494 0.95068 0.87624 1.45632 1.20185 1.65414 1.05147 1.20599 0.88592 0.76547 0.83241 1.90692 1.21617 1.44690 1.82919 1.21971 0.98022 0.98841 0.94541 1.22387 1.01842 0.93346 0.97950 1.22484 0.98782 1.00436 0.94402 1.22380 0.99199 0.95758 0.98978 1.22170 1.02951 0.97901 0.92621 1.23136 0.98667 0.93763 1.01407 1.22848 0.98669 0.96549 0.99630 1.23280 1.01223 0.96823 0.96048 0.92240 0.89379 0.89481 0.77397 0.90375 0.91023 0.76446 0.88609 0.90723 0.90911 0.91399 0.91031 0.91565 0.91240 0.91628 0.89176 0.90087 0.88857 0.90980 0.90264 0.88282 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 10.22 7.85 -10.98 -0.09 10.14 16 12 O -0.52 -12.28 15.86 5.56 0.09 -12.19 16 13 N -0.73 -10.07 5.38 -60.29 -0.32 -10.39 16 14 C 0.12 1.61 5.09 -4.04 -0.02 1.58 16 15 C 0.14 1.25 0.64 -131.01 -0.08 1.17 16 16 N -0.71 -5.64 4.47 -46.86 -0.21 -5.85 16 17 C 0.52 5.41 6.51 -10.99 -0.07 5.34 16 18 O -0.52 -7.55 13.22 5.56 0.07 -7.48 16 19 C -0.11 -0.89 3.30 -90.65 -0.30 -1.19 16 20 C -0.12 -0.90 6.26 -25.07 -0.16 -1.06 16 21 C -0.12 -0.96 6.91 -24.73 -0.17 -1.13 16 22 C -0.13 -1.10 6.83 -25.05 -0.17 -1.27 16 23 C -0.12 -1.07 6.40 -25.59 -0.16 -1.23 16 24 C -0.13 -1.16 6.88 -25.92 -0.18 -1.33 16 25 C -0.14 -0.90 7.99 -25.90 -0.21 -1.10 16 26 C -0.14 -0.90 7.39 -25.91 -0.19 -1.09 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 30 H 0.39 4.17 8.12 -40.82 -0.33 3.84 16 31 H 0.08 1.28 7.63 -51.93 -0.40 0.88 16 32 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 33 H 0.40 2.08 8.69 -40.82 -0.35 1.73 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 1.04 6.39 -51.93 -0.33 0.71 16 43 H 0.08 0.85 6.75 -51.93 -0.35 0.50 16 44 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 45 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.67 7.96 -51.93 -0.41 0.26 16 48 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -36.40 400.04 -10.26 -46.67 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.04 Total: 3.31 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -1.38 Total: -7.07 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.20 Total: -41.82 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.16 Total: -19.67 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.40 -10.26 -46.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062579224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.028 kcal (2) G-P(sol) polarization free energy of solvation -36.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds