Wall clock time and date at job start Tue Mar 31 2020 22:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48507 * 109.46909 * 269.99486 * 3 2 1 5 5 H 1.48501 * 109.47390 * 29.99584 * 3 2 1 6 6 H 1.48495 * 109.47032 * 149.99868 * 3 2 1 7 7 C 1.38799 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99632 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00291 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47229 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00456 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99960 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99943 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.50220 * 35.05779 * 14 13 11 16 16 C 1.53042 * 109.49173 * 274.99540 * 14 13 11 17 17 C 1.53048 * 109.53800 * 178.65129 * 16 14 13 18 18 C 1.53195 * 109.31015 * 61.36266 * 17 16 14 19 19 N 1.46923 * 108.77728 * 305.36662 * 18 17 16 20 20 C 1.34776 * 120.63033 * 233.58185 * 19 18 17 21 21 O 1.21278 * 119.99959 * 4.50964 * 20 19 18 22 22 C 1.50699 * 119.99691 * 184.50412 * 20 19 18 23 23 C 1.54889 * 110.48668 * 86.43756 * 22 20 19 24 24 C 1.55238 * 102.59042 * 156.67254 * 23 22 20 25 25 C 1.54267 * 104.23185 * 322.08658 * 24 23 22 26 26 C 1.53876 * 106.59819 * 23.60632 * 25 24 23 27 27 C 1.46934 * 118.73854 * 53.86196 * 19 18 17 28 28 H 0.97005 * 119.99889 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47078 * 59.99849 * 10 9 7 30 30 H 1.09004 * 109.47067 * 299.99870 * 10 9 7 31 31 H 0.96997 * 120.00032 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.46137 * 58.63303 * 16 14 13 33 33 H 1.08998 * 109.45095 * 298.66611 * 16 14 13 34 34 H 1.09000 * 109.49555 * 301.41446 * 17 16 14 35 35 H 1.08996 * 109.49569 * 181.31343 * 17 16 14 36 36 H 1.09001 * 109.58596 * 185.57621 * 18 17 16 37 37 H 1.09003 * 109.70259 * 65.22583 * 18 17 16 38 38 H 1.09001 * 110.43968 * 323.89109 * 22 20 19 39 39 H 1.08997 * 110.75439 * 275.06725 * 23 22 20 40 40 H 1.08998 * 110.75898 * 38.43544 * 23 22 20 41 41 H 1.08994 * 110.47127 * 203.39375 * 24 23 22 42 42 H 1.09001 * 110.46987 * 80.77193 * 24 23 22 43 43 H 1.08998 * 110.03179 * 264.32721 * 25 24 23 44 44 H 1.09000 * 110.03633 * 142.89161 * 25 24 23 45 45 H 1.09001 * 110.03196 * 240.71420 * 26 25 24 46 46 H 1.09004 * 110.02790 * 119.29079 * 26 25 24 47 47 H 1.09003 * 109.58698 * 65.92368 * 27 19 18 48 48 H 1.08998 * 109.58760 * 186.35102 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4002 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3304 -7.7151 0.0019 15 1 1.4155 -7.7610 -0.5887 16 6 2.0330 -8.1489 1.4390 17 6 1.4647 -9.5700 1.4375 18 6 2.5025 -10.5300 0.8475 19 7 2.9018 -10.0383 -0.4782 20 6 2.8330 -10.8419 -1.5580 21 8 2.3624 -11.9550 -1.4565 22 6 3.3408 -10.3572 -2.8915 23 6 4.8594 -10.6309 -3.0253 24 6 5.0641 -10.6581 -4.5639 25 6 3.8001 -11.3599 -5.1023 26 6 2.7045 -11.1686 -4.0389 27 6 3.3834 -8.6558 -0.6034 28 1 -0.4850 0.8401 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 3.8009 -6.1834 0.0015 32 1 1.3060 -7.4676 1.8810 33 1 2.9533 -8.1265 2.0227 34 1 0.5579 -9.5984 0.8333 35 1 1.2314 -9.8695 2.4592 36 1 2.0675 -11.5249 0.7525 37 1 3.3752 -10.5735 1.4992 38 1 3.1324 -9.2944 -3.0147 39 1 5.4383 -9.8273 -2.5702 40 1 5.1189 -11.5931 -2.5839 41 1 5.9561 -11.2298 -4.8198 42 1 5.1339 -9.6439 -4.9572 43 1 3.9966 -12.4220 -5.2490 44 1 3.4914 -10.9035 -6.0427 45 1 2.3693 -12.1379 -3.6696 46 1 1.8641 -10.6194 -4.4634 47 1 4.3260 -8.5472 -0.0668 48 1 3.5297 -8.4137 -1.6560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070348468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:29 Heat of formation + Delta-G solvation = -91.096878 kcal Electronic energy + Delta-G solvation = -27372.470670 eV Core-core repulsion = 23552.477931 eV Total energy + Delta-G solvation = -3819.992739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90371 -39.48201 -37.99933 -37.02599 -34.40380 -32.99909 -32.46050 -30.79184 -29.54157 -29.03470 -28.36896 -25.77511 -25.51888 -23.42057 -22.26463 -20.94673 -20.50977 -20.45112 -18.94914 -17.92385 -17.90995 -16.66507 -16.33898 -16.11692 -15.70566 -15.20729 -15.09819 -14.96156 -14.83323 -14.35780 -14.10658 -14.00603 -13.79043 -13.62306 -13.26913 -13.17572 -13.03166 -12.59753 -12.25751 -12.14972 -11.74627 -11.63899 -11.52582 -11.48191 -11.42677 -11.12427 -11.10651 -11.08645 -11.05953 -11.05339 -10.78963 -10.66758 -9.97741 -9.85407 -9.48765 -9.16624 -9.09201 -8.86107 -8.27783 -6.53972 -6.24883 -3.95837 2.28745 2.51763 2.99596 3.03451 3.19923 3.25759 3.29489 3.63914 4.04706 4.17163 4.19662 4.27450 4.36101 4.46370 4.65373 4.71446 4.80400 4.89581 4.93816 5.05168 5.08714 5.10175 5.10450 5.16969 5.18854 5.25341 5.32692 5.40626 5.42940 5.53388 5.56375 5.58228 5.60121 5.72745 5.78255 5.80005 5.83154 5.93174 6.00685 6.02694 6.07529 6.09766 6.16361 6.52751 7.02754 7.56119 7.60068 7.86414 8.31816 8.52656 9.20508 10.82495 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002239 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.531865 B =12504.644013 C =13617.351515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.513 6.513 13 N -0.735 5.735 14 C 0.134 3.866 15 H 0.093 0.907 16 C -0.132 4.132 17 C -0.131 4.131 18 C 0.108 3.892 19 N -0.608 5.608 20 C 0.526 3.474 21 O -0.539 6.539 22 C -0.119 4.119 23 C -0.109 4.109 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.115 4.115 27 C 0.100 3.900 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.389 -22.742 -3.740 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.387 6.387 13 N -0.389 5.389 14 C 0.027 3.973 15 H 0.111 0.889 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.014 4.014 19 N -0.342 5.342 20 C 0.315 3.685 21 O -0.416 6.416 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.153 4.153 27 C -0.024 4.024 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.945 -23.571 -3.688 25.848 hybrid contribution 2.419 1.594 0.137 2.900 sum 12.364 -21.977 -3.551 25.465 Atomic orbital electron populations 1.70017 1.05959 1.27496 1.46779 1.24997 0.95032 0.99055 0.94515 0.86166 0.79401 0.81555 0.78362 1.20255 1.20743 1.19697 1.22857 0.94887 0.91620 1.59044 0.90920 1.85422 1.04828 0.96358 1.96726 1.23532 1.06649 0.95248 1.04972 1.20330 0.86529 0.86217 0.74866 1.90714 1.15342 1.85482 1.47144 1.45967 1.09966 1.04880 1.78124 1.21260 0.97826 0.80997 0.97175 0.88909 1.21953 1.01947 0.96589 0.96571 1.21883 0.98798 0.94519 1.01789 1.21680 0.98056 0.99056 0.82563 1.48004 1.65509 1.12270 1.08371 1.20570 0.77566 0.84867 0.85506 1.90665 1.45237 1.20566 1.85092 1.22258 0.97491 1.01843 0.92417 1.22500 0.92695 1.02307 0.97162 1.22418 0.98059 1.01084 0.94524 1.22129 0.94780 1.00831 0.98398 1.22132 0.97972 1.01352 0.93849 1.22093 0.96819 0.80699 1.02773 0.92154 0.89175 0.89163 0.76792 0.90433 0.91566 0.91099 0.90237 0.88823 0.91369 0.88310 0.90858 0.90914 0.91307 0.91166 0.91654 0.91570 0.89696 0.91388 0.90550 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 11 C 0.53 9.20 7.81 -10.99 -0.09 9.12 16 12 O -0.51 -11.04 15.53 5.56 0.09 -10.95 16 13 N -0.73 -8.47 5.08 -53.47 -0.27 -8.75 16 14 C 0.13 1.40 2.62 -67.58 -0.18 1.23 16 15 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 16 C -0.13 -1.34 5.46 -26.68 -0.15 -1.48 16 17 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 18 C 0.11 0.94 6.44 -3.71 -0.02 0.91 16 19 N -0.61 -5.53 2.97 -172.50 -0.51 -6.04 16 20 C 0.53 5.58 6.88 -10.99 -0.08 5.51 16 21 O -0.54 -7.50 14.96 5.56 0.08 -7.42 16 22 C -0.12 -0.98 2.43 -90.11 -0.22 -1.19 16 23 C -0.11 -0.72 6.34 -24.55 -0.16 -0.88 16 24 C -0.12 -0.74 6.84 -24.88 -0.17 -0.91 16 25 C -0.12 -0.84 6.80 -25.61 -0.17 -1.01 16 26 C -0.12 -0.98 6.31 -25.61 -0.16 -1.14 16 27 C 0.10 0.76 5.82 -3.48 -0.02 0.74 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 30 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 31 H 0.40 3.29 8.60 -40.82 -0.35 2.94 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.92 7.00 -51.93 -0.36 0.56 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.73 6.18 -51.93 -0.32 0.41 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.88 6.77 -51.93 -0.35 0.53 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.62 5.41 -51.93 -0.28 0.34 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -35.09 393.88 -10.27 -45.36 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.94 Total: 0.54 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.15 Total: -5.82 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.05 Total: -39.88 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.17 Total: -18.37 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.09 -10.27 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070348468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.735 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds