Wall clock time and date at job start Tue Mar 31 2020 22:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48507 * 109.46909 * 269.99486 * 3 2 1 5 5 H 1.48501 * 109.47390 * 29.99584 * 3 2 1 6 6 H 1.48495 * 109.47032 * 149.99868 * 3 2 1 7 7 C 1.38799 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99632 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00291 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47229 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00456 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99960 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99943 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.50220 * 35.05779 * 14 13 11 16 16 C 1.53042 * 109.49173 * 274.99540 * 14 13 11 17 17 C 1.53048 * 109.53800 * 178.65129 * 16 14 13 18 18 C 1.53195 * 109.31015 * 61.36266 * 17 16 14 19 19 N 1.46923 * 108.77728 * 305.36662 * 18 17 16 20 20 C 1.34776 * 120.63033 * 233.58185 * 19 18 17 21 21 O 1.21278 * 119.99959 * 4.50964 * 20 19 18 22 22 C 1.50699 * 119.99691 * 184.50412 * 20 19 18 23 23 C 1.54889 * 110.48668 * 86.43756 * 22 20 19 24 24 C 1.55238 * 102.59042 * 156.67254 * 23 22 20 25 25 C 1.54267 * 104.23185 * 322.08658 * 24 23 22 26 26 C 1.53876 * 106.59819 * 23.60632 * 25 24 23 27 27 C 1.46934 * 118.73854 * 53.86196 * 19 18 17 28 28 H 0.97005 * 119.99889 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47078 * 59.99849 * 10 9 7 30 30 H 1.09004 * 109.47067 * 299.99870 * 10 9 7 31 31 H 0.96997 * 120.00032 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.46137 * 58.63303 * 16 14 13 33 33 H 1.08998 * 109.45095 * 298.66611 * 16 14 13 34 34 H 1.09000 * 109.49555 * 301.41446 * 17 16 14 35 35 H 1.08996 * 109.49569 * 181.31343 * 17 16 14 36 36 H 1.09001 * 109.58596 * 185.57621 * 18 17 16 37 37 H 1.09003 * 109.70259 * 65.22583 * 18 17 16 38 38 H 1.09001 * 110.43968 * 323.89109 * 22 20 19 39 39 H 1.08997 * 110.75439 * 275.06725 * 23 22 20 40 40 H 1.08998 * 110.75898 * 38.43544 * 23 22 20 41 41 H 1.08994 * 110.47127 * 203.39375 * 24 23 22 42 42 H 1.09001 * 110.46987 * 80.77193 * 24 23 22 43 43 H 1.08998 * 110.03179 * 264.32721 * 25 24 23 44 44 H 1.09000 * 110.03633 * 142.89161 * 25 24 23 45 45 H 1.09001 * 110.03196 * 240.71420 * 26 25 24 46 46 H 1.09004 * 110.02790 * 119.29079 * 26 25 24 47 47 H 1.09003 * 109.58698 * 65.92368 * 27 19 18 48 48 H 1.08998 * 109.58760 * 186.35102 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4002 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3304 -7.7151 0.0019 15 1 1.4155 -7.7610 -0.5887 16 6 2.0330 -8.1489 1.4390 17 6 1.4647 -9.5700 1.4375 18 6 2.5025 -10.5300 0.8475 19 7 2.9018 -10.0383 -0.4782 20 6 2.8330 -10.8419 -1.5580 21 8 2.3624 -11.9550 -1.4565 22 6 3.3408 -10.3572 -2.8915 23 6 4.8594 -10.6309 -3.0253 24 6 5.0641 -10.6581 -4.5639 25 6 3.8001 -11.3599 -5.1023 26 6 2.7045 -11.1686 -4.0389 27 6 3.3834 -8.6558 -0.6034 28 1 -0.4850 0.8401 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 3.8009 -6.1834 0.0015 32 1 1.3060 -7.4676 1.8810 33 1 2.9533 -8.1265 2.0227 34 1 0.5579 -9.5984 0.8333 35 1 1.2314 -9.8695 2.4592 36 1 2.0675 -11.5249 0.7525 37 1 3.3752 -10.5735 1.4992 38 1 3.1324 -9.2944 -3.0147 39 1 5.4383 -9.8273 -2.5702 40 1 5.1189 -11.5931 -2.5839 41 1 5.9561 -11.2298 -4.8198 42 1 5.1339 -9.6439 -4.9572 43 1 3.9966 -12.4220 -5.2490 44 1 3.4914 -10.9035 -6.0427 45 1 2.3693 -12.1379 -3.6696 46 1 1.8641 -10.6194 -4.4634 47 1 4.3260 -8.5472 -0.0668 48 1 3.5297 -8.4137 -1.6560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070348468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:28 Heat of formation + Delta-G solvation = -114.265589 kcal Electronic energy + Delta-G solvation = -27373.475341 eV Core-core repulsion = 23552.477931 eV Total energy + Delta-G solvation = -3820.997410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.71407 -40.66552 -38.83960 -37.83246 -35.51150 -34.56734 -33.81477 -31.93673 -30.24846 -29.59554 -29.53989 -27.63643 -26.52122 -24.22700 -23.10317 -21.75096 -21.44687 -21.19927 -19.98734 -19.55562 -18.66557 -17.90187 -17.47472 -16.94726 -16.86191 -16.45341 -16.38945 -16.04212 -15.76512 -15.69866 -15.20852 -14.94382 -14.71095 -14.48799 -14.41214 -14.27656 -13.94096 -13.72869 -13.55119 -13.14729 -12.93589 -12.88201 -12.60509 -12.53374 -12.33396 -12.20023 -12.07742 -11.99223 -11.95985 -11.89350 -11.70974 -11.62630 -11.26849 -11.12832 -10.95072 -10.79078 -10.24486 -10.17925 -9.72353 -8.64777 -8.33274 -6.10925 1.26646 1.43690 1.44384 1.51690 1.58485 1.63274 1.83776 2.28460 2.37126 3.01183 3.31697 3.39413 3.59768 3.61727 3.67402 3.75822 3.92453 3.94506 4.03710 4.11969 4.24430 4.33500 4.35298 4.46805 4.47410 4.53076 4.55470 4.58532 4.60767 4.71095 4.78027 4.80073 4.82639 4.93298 4.95400 5.08379 5.14092 5.20591 5.23243 5.27301 5.30601 5.41129 5.43681 5.47777 5.53060 6.21359 6.26907 6.53408 7.07463 7.08407 7.27982 8.75792 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002239 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.531865 B =12504.644013 C =13617.351515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.128 4.128 11 C 0.537 3.463 12 O -0.565 6.565 13 N -0.704 5.704 14 C 0.134 3.866 15 H 0.059 0.941 16 C -0.127 4.127 17 C -0.124 4.124 18 C 0.110 3.890 19 N -0.606 5.606 20 C 0.521 3.479 21 O -0.580 6.580 22 C -0.118 4.118 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.119 4.119 27 C 0.107 3.893 28 H 0.270 0.730 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.421 0.579 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.113 0.887 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.442 -22.373 -3.774 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.323 3.677 12 O -0.443 6.443 13 N -0.358 5.358 14 C 0.028 3.972 15 H 0.077 0.923 16 C -0.166 4.166 17 C -0.163 4.163 18 C -0.012 4.012 19 N -0.339 5.339 20 C 0.311 3.689 21 O -0.460 6.460 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.157 4.157 25 C -0.161 4.161 26 C -0.157 4.157 27 C -0.016 4.016 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.259 0.741 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.131 0.869 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.068 -23.220 -3.716 27.402 hybrid contribution 1.144 1.335 0.168 1.766 sum 15.211 -21.885 -3.548 26.887 Atomic orbital electron populations 1.70191 1.08016 1.28538 1.48173 1.26133 0.95939 1.03372 0.93850 0.84960 0.78239 0.76056 0.78770 1.19335 1.20567 1.18031 1.23203 0.95375 0.91914 1.58596 0.89715 1.85644 1.10829 0.99415 1.97059 1.23365 1.03417 0.94064 1.07073 1.20064 0.86199 0.86658 0.74775 1.90712 1.17642 1.86013 1.49883 1.45581 1.10459 1.04083 1.75707 1.21307 0.97811 0.80728 0.97352 0.92253 1.21899 1.02218 0.96230 0.96256 1.21821 0.97972 0.94155 1.02370 1.21710 0.98764 0.97956 0.82785 1.48086 1.64886 1.12662 1.08229 1.21036 0.76936 0.84463 0.86501 1.90649 1.47153 1.22489 1.85741 1.22321 0.98700 1.02163 0.90673 1.22514 0.91319 1.02548 0.97760 1.22429 0.97713 1.01667 0.93915 1.22134 0.94751 1.01086 0.98101 1.22133 0.98725 1.00135 0.94722 1.22188 0.96655 0.78733 1.04060 0.92088 0.87008 0.86811 0.74127 0.93720 0.88953 0.93552 0.88664 0.90370 0.88677 0.87043 0.88632 0.92011 0.90321 0.90138 0.91830 0.90860 0.92175 0.91703 0.86898 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.50 13.22 21.65 0.29 -55.21 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 42.66 29.55 68.60 2.03 44.69 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.54 -30.13 9.50 67.95 0.65 -29.49 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 9 S -0.16 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.13 -4.65 6.16 71.23 0.44 -4.22 16 11 C 0.54 17.98 7.81 87.65 0.68 18.67 16 12 O -0.56 -24.96 15.53 -3.03 -0.05 -25.01 16 13 N -0.70 -14.33 5.08 -441.48 -2.24 -16.57 16 14 C 0.13 2.58 2.62 45.21 0.12 2.70 16 15 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 16 C -0.13 -2.40 5.46 30.62 0.17 -2.24 16 17 C -0.12 -2.15 6.08 30.68 0.19 -1.96 16 18 C 0.11 1.72 6.44 86.36 0.56 2.28 16 19 N -0.61 -9.88 2.97 -818.06 -2.43 -12.31 16 20 C 0.52 10.66 6.88 87.66 0.60 11.26 16 21 O -0.58 -16.58 14.96 -3.02 -0.05 -16.62 16 22 C -0.12 -1.75 2.43 -10.46 -0.03 -1.77 16 23 C -0.10 -1.09 6.34 32.01 0.20 -0.89 16 24 C -0.12 -1.12 6.84 31.79 0.22 -0.90 16 25 C -0.12 -1.52 6.80 31.32 0.21 -1.31 16 26 C -0.12 -2.02 6.31 31.32 0.20 -1.82 16 27 C 0.11 1.23 5.82 86.51 0.50 1.74 16 28 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 29 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 30 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 31 H 0.42 4.99 8.60 -92.71 -0.80 4.20 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.52 7.00 -2.39 -0.02 1.50 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.37 6.18 -2.39 -0.01 1.35 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.81 8.05 -2.39 -0.02 0.79 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 1.32 6.77 -2.39 -0.02 1.30 16 46 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.11 1.00 5.41 -2.39 -0.01 0.99 16 Total: -1.00 -81.61 393.88 1.72 -79.88 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.16 Total: 17.58 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 5.18 Total: -6.84 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -4.38 Total: -84.09 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.09 Total: -41.63 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -81.61 1.72 -79.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070348468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.382 kcal (2) G-P(sol) polarization free energy of solvation -81.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds