Wall clock time and date at job start Tue Mar 31 2020 23:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48505 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47759 * 300.00350 * 3 2 1 6 6 H 1.48506 * 109.47059 * 60.00530 * 3 2 1 7 7 C 1.38797 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00306 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99936 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46877 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00313 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99759 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.63033 * 359.72119 * 13 11 10 15 15 C 1.53194 * 108.77334 * 233.88527 * 14 13 11 16 16 C 1.53038 * 109.31101 * 305.36035 * 15 14 13 17 17 C 1.53045 * 109.53516 * 61.36880 * 16 15 14 18 18 H 1.09001 * 109.52360 * 58.59815 * 17 16 15 19 19 N 1.46497 * 109.49504 * 178.68100 * 17 16 15 20 20 C 1.34782 * 119.99939 * 204.83681 * 19 17 16 21 21 O 1.21282 * 119.99838 * 0.02562 * 20 19 17 22 22 C 1.50698 * 120.00040 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47157 * 180.02562 * 22 20 19 24 24 C 1.53773 * 113.61345 * 272.49931 * 23 22 20 25 25 C 1.53782 * 87.08187 * 220.01842 * 24 23 22 26 26 C 1.53780 * 113.61388 * 174.99824 * 23 22 20 27 27 C 1.46926 * 120.62918 * 180.02562 * 13 11 10 28 28 H 0.97005 * 119.99936 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47008 * 60.00129 * 10 9 7 30 30 H 1.09001 * 109.47371 * 300.00132 * 10 9 7 31 31 H 1.09004 * 109.58777 * 353.67036 * 14 13 11 32 32 H 1.08994 * 109.58607 * 114.09373 * 14 13 11 33 33 H 1.09005 * 109.49558 * 185.41228 * 15 14 13 34 34 H 1.08996 * 109.52408 * 65.33314 * 15 14 13 35 35 H 1.08994 * 109.46487 * 301.34997 * 16 15 14 36 36 H 1.08999 * 109.45649 * 181.38281 * 16 15 14 37 37 H 0.97002 * 119.99954 * 24.83977 * 19 17 16 38 38 H 1.09004 * 109.46750 * 300.00118 * 22 20 19 39 39 H 1.09000 * 109.47054 * 59.99816 * 22 20 19 40 40 H 1.09001 * 112.84476 * 43.80242 * 23 22 20 41 41 H 1.09005 * 113.61532 * 334.56162 * 24 23 22 42 42 H 1.08994 * 113.61682 * 105.47073 * 24 23 22 43 43 H 1.09005 * 113.61227 * 270.88448 * 25 24 23 44 44 H 1.08993 * 113.69444 * 139.99043 * 25 24 23 45 45 H 1.09003 * 113.61248 * 254.52826 * 26 23 22 46 46 H 1.08991 * 113.61391 * 25.43318 * 26 23 22 47 47 H 1.09001 * 109.58178 * 245.90575 * 27 13 11 48 48 H 1.08998 * 109.58625 * 6.18591 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3966 -1.2123 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9872 -5.3027 -0.0017 12 8 0.7910 -5.5022 0.0000 13 7 2.8440 -6.3432 -0.0022 14 6 4.2958 -6.1174 -0.0093 15 6 4.9092 -6.8901 -1.1813 16 6 4.5025 -8.3623 -1.0851 17 6 2.9792 -8.4793 -1.1738 18 1 2.6348 -8.0479 -2.1138 19 7 2.5929 -9.8912 -1.1133 20 6 1.4263 -10.2945 -1.6545 21 8 0.6966 -9.4887 -2.1921 22 6 1.0287 -11.7467 -1.5917 23 6 -0.3275 -11.9342 -2.2746 24 6 -1.5254 -11.7185 -1.3349 25 6 -2.1886 -12.9176 -2.0331 26 6 -0.7698 -13.4037 -2.3731 27 6 2.3439 -7.7247 -0.0024 28 1 -0.4850 0.8401 0.0004 29 1 3.1250 -3.7317 0.8875 30 1 3.1237 -3.7309 -0.8925 31 1 4.4995 -5.0530 -0.1268 32 1 4.7254 -6.4725 0.9273 33 1 5.9955 -6.8093 -1.1415 34 1 4.5476 -6.4734 -2.1214 35 1 4.8433 -8.7718 -0.1342 36 1 4.9578 -8.9190 -1.9041 37 1 3.1768 -10.5357 -0.6836 38 1 1.7787 -12.3511 -2.1020 39 1 0.9576 -12.0592 -0.5499 40 1 -0.4060 -11.3905 -3.2161 41 1 -1.2945 -11.8978 -0.2848 42 1 -2.0455 -10.7749 -1.4998 43 1 -2.7773 -12.6424 -2.9082 44 1 -2.7253 -13.5786 -1.3527 45 1 -0.6797 -13.8205 -3.3763 46 1 -0.3322 -14.0436 -1.6070 47 1 2.6140 -8.2111 0.9349 48 1 1.2595 -7.7207 -0.1127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:10 Heat of formation + Delta-G solvation = -64.483370 kcal Electronic energy + Delta-G solvation = -27107.287999 eV Core-core repulsion = 23288.449308 eV Total energy + Delta-G solvation = -3818.838691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55101 -39.67389 -38.51826 -37.16661 -34.69388 -32.43322 -32.37911 -31.39759 -30.12714 -28.50943 -25.84342 -25.57497 -25.10638 -24.31444 -22.85293 -21.18091 -20.54674 -19.61966 -19.03290 -17.70976 -17.26231 -16.76155 -16.32882 -16.00348 -15.67780 -15.21462 -15.10968 -14.78804 -14.70523 -14.57624 -14.09166 -13.92596 -13.69527 -13.30967 -13.16288 -13.04145 -12.77441 -12.70457 -12.50689 -12.14406 -11.93107 -11.82391 -11.67043 -11.29404 -11.23434 -11.05773 -10.99209 -10.91118 -10.82342 -10.72898 -10.57053 -10.44616 -9.92810 -9.78075 -9.49033 -9.27739 -9.05494 -8.45531 -8.18515 -6.47366 -6.19418 -3.89830 2.48280 2.72534 3.08106 3.12380 3.22805 3.28755 3.32966 3.63841 4.21652 4.24004 4.35741 4.41263 4.42643 4.58224 4.61739 4.65917 4.76428 4.83969 5.00248 5.04397 5.11590 5.15552 5.19232 5.24306 5.25318 5.32994 5.42845 5.48728 5.53837 5.56280 5.63476 5.66500 5.67198 5.70109 5.78193 5.89633 5.89802 5.98325 6.00067 6.03027 6.12958 6.20189 6.27840 6.66319 7.27077 7.57613 7.61858 8.07722 8.37333 8.60510 9.25671 10.88031 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.002222 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.715261 B =12598.684298 C =13997.130847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.149 4.149 11 C 0.534 3.466 12 O -0.511 6.511 13 N -0.619 5.619 14 C 0.105 3.895 15 C -0.133 4.133 16 C -0.124 4.124 17 C 0.131 3.869 18 H 0.093 0.907 19 N -0.730 5.730 20 C 0.509 3.491 21 O -0.524 6.524 22 C -0.130 4.130 23 C -0.096 4.096 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.138 4.138 27 C 0.106 3.894 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.197 -28.153 -1.853 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.300 4.300 11 C 0.322 3.678 12 O -0.384 6.384 13 N -0.356 5.356 14 C -0.018 4.018 15 C -0.171 4.171 16 C -0.162 4.162 17 C 0.025 3.975 18 H 0.111 0.889 19 N -0.382 5.382 20 C 0.295 3.705 21 O -0.399 6.399 22 C -0.170 4.170 23 C -0.115 4.115 24 C -0.173 4.173 25 C -0.181 4.181 26 C -0.175 4.175 27 C -0.018 4.018 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.686 -27.735 -2.247 28.868 hybrid contribution 2.437 0.948 0.276 2.629 sum 10.123 -26.788 -1.971 28.704 Atomic orbital electron populations 1.70035 1.05948 1.27316 1.46921 1.25001 0.95030 0.99035 0.94601 0.86116 0.79557 0.81915 0.77885 1.19625 1.20580 1.20587 1.22896 0.94904 0.91632 1.58803 0.90896 1.85468 1.04979 0.96323 1.96673 1.23547 1.06458 0.95302 1.04663 1.20370 0.86245 0.86171 0.75031 1.90712 1.15180 1.85101 1.47417 1.48040 1.06342 1.05385 1.75821 1.21758 0.80094 1.01810 0.98146 1.21901 1.01016 0.94479 0.99751 1.21786 0.94132 0.97656 1.02643 1.21308 0.94537 0.81114 1.00519 0.88912 1.46034 1.22276 1.09441 1.60460 1.20816 0.80752 0.91135 0.77793 1.90784 1.50950 1.55288 1.42851 1.21708 0.99141 0.93117 1.03055 1.22356 0.92245 0.96597 1.00277 1.22952 0.96989 0.98973 0.98416 1.22798 0.96254 0.98184 1.00837 1.22981 0.96868 0.95959 1.01723 1.21810 1.01595 0.81463 0.96977 0.92246 0.89266 0.89240 0.88903 0.91395 0.90048 0.90875 0.91198 0.91064 0.76730 0.88904 0.88861 0.88164 0.90375 0.90952 0.90177 0.91554 0.91512 0.90178 0.92002 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.52 13.22 55.49 0.73 -25.79 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 10 C -0.15 -3.11 4.50 36.01 0.16 -2.95 16 11 C 0.53 10.71 7.72 -10.98 -0.08 10.62 16 12 O -0.51 -12.49 15.27 5.56 0.08 -12.41 16 13 N -0.62 -9.15 2.97 -172.80 -0.51 -9.67 16 14 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 15 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 16 C -0.12 -0.90 5.35 -26.69 -0.14 -1.05 16 17 C 0.13 1.38 2.60 -67.83 -0.18 1.20 16 18 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 19 N -0.73 -6.04 5.08 -53.71 -0.27 -6.31 16 20 C 0.51 5.41 7.80 -10.98 -0.09 5.32 16 21 O -0.52 -8.35 15.42 5.56 0.09 -8.27 16 22 C -0.13 -0.90 5.54 -27.88 -0.15 -1.05 16 23 C -0.10 -0.81 3.15 -89.81 -0.28 -1.09 16 24 C -0.14 -1.23 7.63 -25.92 -0.20 -1.43 16 25 C -0.14 -1.06 8.08 -25.92 -0.21 -1.27 16 26 C -0.14 -0.89 7.64 -25.92 -0.20 -1.09 16 27 C 0.11 1.42 6.01 -3.74 -0.02 1.39 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.09 1.70 7.95 -51.92 -0.41 1.29 16 30 H 0.09 1.72 7.69 -51.92 -0.40 1.32 16 31 H 0.09 1.01 5.93 -51.93 -0.31 0.71 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.40 1.87 8.60 -40.82 -0.35 1.51 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.49 7.84 -51.93 -0.41 0.08 16 40 H 0.10 1.05 7.67 -51.93 -0.40 0.65 16 41 H 0.08 0.64 7.90 -51.93 -0.41 0.23 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.10 1.70 7.00 -51.93 -0.36 1.33 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -37.59 398.80 -10.55 -48.13 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.06 Total: 0.28 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.38 Total: -4.64 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.05 Total: -41.76 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.17 Total: -20.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.59 -10.55 -48.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.350 kcal (2) G-P(sol) polarization free energy of solvation -37.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds