Wall clock time and date at job start Tue Mar 31 2020 23:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48505 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47759 * 300.00350 * 3 2 1 6 6 H 1.48506 * 109.47059 * 60.00530 * 3 2 1 7 7 C 1.38797 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00306 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99936 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46877 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00313 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99759 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.63033 * 359.72119 * 13 11 10 15 15 C 1.53194 * 108.77334 * 233.88527 * 14 13 11 16 16 C 1.53038 * 109.31101 * 305.36035 * 15 14 13 17 17 C 1.53045 * 109.53516 * 61.36880 * 16 15 14 18 18 H 1.09001 * 109.52360 * 58.59815 * 17 16 15 19 19 N 1.46497 * 109.49504 * 178.68100 * 17 16 15 20 20 C 1.34782 * 119.99939 * 204.83681 * 19 17 16 21 21 O 1.21282 * 119.99838 * 0.02562 * 20 19 17 22 22 C 1.50698 * 120.00040 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47157 * 180.02562 * 22 20 19 24 24 C 1.53773 * 113.61345 * 272.49931 * 23 22 20 25 25 C 1.53782 * 87.08187 * 220.01842 * 24 23 22 26 26 C 1.53780 * 113.61388 * 174.99824 * 23 22 20 27 27 C 1.46926 * 120.62918 * 180.02562 * 13 11 10 28 28 H 0.97005 * 119.99936 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47008 * 60.00129 * 10 9 7 30 30 H 1.09001 * 109.47371 * 300.00132 * 10 9 7 31 31 H 1.09004 * 109.58777 * 353.67036 * 14 13 11 32 32 H 1.08994 * 109.58607 * 114.09373 * 14 13 11 33 33 H 1.09005 * 109.49558 * 185.41228 * 15 14 13 34 34 H 1.08996 * 109.52408 * 65.33314 * 15 14 13 35 35 H 1.08994 * 109.46487 * 301.34997 * 16 15 14 36 36 H 1.08999 * 109.45649 * 181.38281 * 16 15 14 37 37 H 0.97002 * 119.99954 * 24.83977 * 19 17 16 38 38 H 1.09004 * 109.46750 * 300.00118 * 22 20 19 39 39 H 1.09000 * 109.47054 * 59.99816 * 22 20 19 40 40 H 1.09001 * 112.84476 * 43.80242 * 23 22 20 41 41 H 1.09005 * 113.61532 * 334.56162 * 24 23 22 42 42 H 1.08994 * 113.61682 * 105.47073 * 24 23 22 43 43 H 1.09005 * 113.61227 * 270.88448 * 25 24 23 44 44 H 1.08993 * 113.69444 * 139.99043 * 25 24 23 45 45 H 1.09003 * 113.61248 * 254.52826 * 26 23 22 46 46 H 1.08991 * 113.61391 * 25.43318 * 26 23 22 47 47 H 1.09001 * 109.58178 * 245.90575 * 27 13 11 48 48 H 1.08998 * 109.58625 * 6.18591 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3966 -1.2123 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9872 -5.3027 -0.0017 12 8 0.7910 -5.5022 0.0000 13 7 2.8440 -6.3432 -0.0022 14 6 4.2958 -6.1174 -0.0093 15 6 4.9092 -6.8901 -1.1813 16 6 4.5025 -8.3623 -1.0851 17 6 2.9792 -8.4793 -1.1738 18 1 2.6348 -8.0479 -2.1138 19 7 2.5929 -9.8912 -1.1133 20 6 1.4263 -10.2945 -1.6545 21 8 0.6966 -9.4887 -2.1921 22 6 1.0287 -11.7467 -1.5917 23 6 -0.3275 -11.9342 -2.2746 24 6 -1.5254 -11.7185 -1.3349 25 6 -2.1886 -12.9176 -2.0331 26 6 -0.7698 -13.4037 -2.3731 27 6 2.3439 -7.7247 -0.0024 28 1 -0.4850 0.8401 0.0004 29 1 3.1250 -3.7317 0.8875 30 1 3.1237 -3.7309 -0.8925 31 1 4.4995 -5.0530 -0.1268 32 1 4.7254 -6.4725 0.9273 33 1 5.9955 -6.8093 -1.1415 34 1 4.5476 -6.4734 -2.1214 35 1 4.8433 -8.7718 -0.1342 36 1 4.9578 -8.9190 -1.9041 37 1 3.1768 -10.5357 -0.6836 38 1 1.7787 -12.3511 -2.1020 39 1 0.9576 -12.0592 -0.5499 40 1 -0.4060 -11.3905 -3.2161 41 1 -1.2945 -11.8978 -0.2848 42 1 -2.0455 -10.7749 -1.4998 43 1 -2.7773 -12.6424 -2.9082 44 1 -2.7253 -13.5786 -1.3527 45 1 -0.6797 -13.8205 -3.3763 46 1 -0.3322 -14.0436 -1.6070 47 1 2.6140 -8.2111 0.9349 48 1 1.2595 -7.7207 -0.1127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070452617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:09 Heat of formation + Delta-G solvation = -90.968043 kcal Electronic energy + Delta-G solvation = -27108.436460 eV Core-core repulsion = 23288.449308 eV Total energy + Delta-G solvation = -3819.987153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55103 -40.76986 -39.35477 -38.32957 -35.74281 -34.60441 -33.40338 -32.28781 -31.25871 -29.66840 -27.71729 -26.46572 -26.24162 -25.10692 -23.63965 -22.18007 -21.39475 -20.42614 -20.24625 -19.50694 -18.31088 -17.98587 -17.27842 -17.14997 -16.89928 -16.69692 -16.31728 -16.13969 -15.74297 -15.45163 -15.35497 -15.07062 -14.75312 -14.52260 -14.34573 -14.23331 -13.90724 -13.61995 -13.50075 -13.29606 -13.18297 -12.92622 -12.81450 -12.67420 -12.61107 -12.31673 -12.09941 -12.00964 -11.71499 -11.66838 -11.52295 -11.27248 -11.17609 -11.07446 -11.01265 -10.74179 -10.37945 -10.27665 -9.62665 -8.71130 -8.36044 -6.15686 1.21495 1.40938 1.42425 1.50358 1.56068 1.67792 1.92714 2.25204 2.34069 2.98057 3.22347 3.56051 3.62035 3.72728 3.74929 3.80150 3.87612 3.93728 3.98809 4.03002 4.10028 4.19250 4.22181 4.38847 4.47455 4.52656 4.55171 4.59700 4.73162 4.75820 4.78336 4.86397 4.89840 4.92430 5.01281 5.04282 5.08345 5.12901 5.17172 5.27818 5.38491 5.39362 5.40133 5.58232 5.63916 6.18347 6.23316 6.59612 7.04573 7.09340 7.33633 8.73718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.002222 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.715261 B =12598.684298 C =13997.130847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.003 2.997 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.086 0.914 9 S -0.162 6.162 10 C -0.118 4.118 11 C 0.527 3.473 12 O -0.571 6.571 13 N -0.605 5.605 14 C 0.093 3.907 15 C -0.129 4.129 16 C -0.113 4.113 17 C 0.138 3.862 18 H 0.050 0.950 19 N -0.710 5.710 20 C 0.501 3.499 21 O -0.590 6.590 22 C -0.120 4.120 23 C -0.104 4.104 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.119 4.119 27 C 0.106 3.894 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.423 0.577 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.999 -30.444 -0.882 33.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.690 4.690 8 H 0.104 0.896 9 S 0.066 5.934 10 C -0.269 4.269 11 C 0.315 3.685 12 O -0.450 6.450 13 N -0.340 5.340 14 C -0.028 4.028 15 C -0.167 4.167 16 C -0.151 4.151 17 C 0.031 3.969 18 H 0.068 0.932 19 N -0.364 5.364 20 C 0.289 3.711 21 O -0.469 6.469 22 C -0.159 4.159 23 C -0.123 4.123 24 C -0.185 4.185 25 C -0.182 4.182 26 C -0.156 4.156 27 C -0.018 4.018 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.261 0.739 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.592 -30.104 -1.256 32.656 hybrid contribution 0.968 1.549 -0.019 1.826 sum 13.560 -28.555 -1.275 31.637 Atomic orbital electron populations 1.70214 1.08129 1.28569 1.48073 1.26210 0.96008 1.03543 0.93713 0.84847 0.78691 0.75984 0.78044 1.17658 1.20027 1.19869 1.23218 0.95371 0.91596 1.58792 0.89600 1.85737 1.10984 0.99685 1.97037 1.23338 1.03242 0.93799 1.06544 1.20311 0.86002 0.87025 0.75149 1.90694 1.17753 1.85844 1.50680 1.48065 1.07896 1.04725 1.73301 1.22215 0.76987 1.02535 1.01055 1.21920 1.02891 0.94502 0.97433 1.21780 0.90564 0.97448 1.05267 1.21099 0.97057 0.81738 0.96981 0.93215 1.45851 1.21923 1.08936 1.59640 1.21644 0.80456 0.92409 0.76565 1.90777 1.53027 1.57314 1.45797 1.21755 0.98789 0.90456 1.04883 1.22320 0.93105 0.98076 0.98832 1.23041 0.97914 0.98027 0.99529 1.22814 0.97281 0.97514 1.00549 1.22926 0.95268 0.94450 1.02972 1.21910 0.98969 0.81141 0.99784 0.92012 0.86891 0.87384 0.89234 0.87982 0.86325 0.93002 0.87949 0.89000 0.73889 0.85441 0.86151 0.91322 0.89174 0.94714 0.91080 0.90240 0.90762 0.87681 0.88885 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.69 13.22 21.65 0.29 -57.40 16 2 C 0.01 0.56 5.49 84.86 0.47 1.03 16 3 Si 1.00 44.29 29.55 68.60 2.03 46.32 16 4 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.66 9.50 67.95 0.65 -31.01 16 8 H 0.09 4.61 7.80 -2.91 -0.02 4.58 16 9 S -0.16 -9.45 20.57 -56.49 -1.16 -10.61 16 10 C -0.12 -4.99 4.50 71.24 0.32 -4.67 16 11 C 0.53 22.00 7.72 87.66 0.68 22.67 16 12 O -0.57 -30.21 15.27 -3.02 -0.05 -30.26 16 13 N -0.61 -17.68 2.97 -818.99 -2.43 -20.11 16 14 C 0.09 1.67 6.34 86.36 0.55 2.22 16 15 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 16 C -0.11 -1.17 5.35 30.62 0.16 -1.00 16 17 C 0.14 2.78 2.60 45.06 0.12 2.90 16 18 H 0.05 1.46 7.58 -2.39 -0.02 1.44 16 19 N -0.71 -10.46 5.08 -442.23 -2.25 -12.70 16 20 C 0.50 10.66 7.80 87.66 0.68 11.34 16 21 O -0.59 -20.60 15.42 -3.04 -0.05 -20.65 16 22 C -0.12 -1.40 5.54 29.85 0.17 -1.24 16 23 C -0.10 -1.77 3.15 -10.27 -0.03 -1.80 16 24 C -0.15 -2.85 7.63 31.12 0.24 -2.61 16 25 C -0.14 -2.11 8.08 31.12 0.25 -1.86 16 26 C -0.12 -1.30 7.64 31.12 0.24 -1.06 16 27 C 0.11 2.83 6.01 86.35 0.52 3.35 16 28 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 29 H 0.11 4.20 7.95 -2.40 -0.02 4.18 16 30 H 0.11 4.13 7.69 -2.39 -0.02 4.11 16 31 H 0.09 1.70 5.93 -2.38 -0.01 1.68 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.42 2.20 8.60 -92.71 -0.80 1.41 16 38 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.12 0.82 7.84 -2.39 -0.02 0.81 16 40 H 0.07 1.60 7.67 -2.39 -0.02 1.58 16 41 H 0.09 1.47 7.90 -2.38 -0.02 1.45 16 42 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.10 0.67 8.10 -2.39 -0.02 0.65 16 47 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.05 1.74 7.00 -2.39 -0.02 1.72 16 Total: -1.00 -93.17 398.80 1.72 -91.45 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.15 Total: 17.17 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.19 Total: -3.21 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -4.40 Total: -90.22 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -0.09 Total: -50.91 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -9.45 SS G_CDS: -1.16 Total: -10.61 kcal Total: -93.17 1.72 -91.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.485 kcal (2) G-P(sol) polarization free energy of solvation -93.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds