Wall clock time and date at job start Tue Mar 31 2020 23:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48497 * 109.47232 * 270.00193 * 3 2 1 5 5 H 1.48500 * 109.47178 * 30.00228 * 3 2 1 6 6 H 1.48500 * 109.47167 * 150.00116 * 3 2 1 7 7 C 1.38795 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00066 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00282 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00333 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47338 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00109 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.49358 * 35.00753 * 14 13 11 16 16 C 1.53040 * 109.49802 * 274.93827 * 14 13 11 17 17 C 1.53037 * 109.53749 * 178.68384 * 16 14 13 18 18 C 1.53201 * 109.31181 * 61.36306 * 17 16 14 19 19 N 1.46920 * 108.77580 * 305.36785 * 18 17 16 20 20 C 1.34782 * 120.62950 * 233.60750 * 19 18 17 21 21 O 1.21276 * 120.00230 * 179.97438 * 20 19 18 22 22 C 1.50706 * 119.99775 * 359.97438 * 20 19 18 23 23 C 1.53001 * 109.46706 * 179.97438 * 22 20 19 24 24 C 1.53776 * 113.61919 * 272.49663 * 23 22 20 25 25 C 1.53771 * 87.08403 * 220.02151 * 24 23 22 26 26 C 1.53779 * 113.61133 * 175.00038 * 23 22 20 27 27 C 1.46932 * 118.76859 * 53.58821 * 19 18 17 28 28 H 0.97003 * 119.99413 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47169 * 59.99896 * 10 9 7 30 30 H 1.09000 * 109.47035 * 299.99863 * 10 9 7 31 31 H 0.96995 * 120.00018 * 0.27749 * 13 11 10 32 32 H 1.09002 * 109.45905 * 298.70622 * 16 14 13 33 33 H 1.08998 * 109.45915 * 58.66489 * 16 14 13 34 34 H 1.09001 * 109.50261 * 181.31338 * 17 16 14 35 35 H 1.09006 * 109.50059 * 301.41842 * 17 16 14 36 36 H 1.08997 * 109.58268 * 65.15387 * 18 17 16 37 37 H 1.09004 * 109.58549 * 185.43131 * 18 17 16 38 38 H 1.08996 * 109.47034 * 299.99848 * 22 20 19 39 39 H 1.08993 * 109.46911 * 60.00332 * 22 20 19 40 40 H 1.09000 * 112.84905 * 43.81147 * 23 22 20 41 41 H 1.09004 * 113.61504 * 334.57242 * 24 23 22 42 42 H 1.08996 * 113.61568 * 105.46769 * 24 23 22 43 43 H 1.09003 * 113.61846 * 270.88220 * 25 24 23 44 44 H 1.09001 * 113.69149 * 139.99029 * 25 24 23 45 45 H 1.09004 * 113.61293 * 254.53351 * 26 23 22 46 46 H 1.08997 * 113.61509 * 25.34825 * 26 23 22 47 47 H 1.08993 * 109.61716 * 186.64413 * 27 19 18 48 48 H 1.08998 * 109.56417 * 66.20858 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2021 0.0001 10 6 4.0866 -2.9845 -0.0017 11 6 5.5730 -3.2326 -0.0021 12 8 6.3441 -2.2964 -0.0016 13 7 6.0457 -4.4948 -0.0029 14 6 7.4907 -4.7358 -0.0038 15 1 7.9883 -3.9658 0.5858 16 6 8.0142 -4.6967 -1.4413 17 6 9.5288 -4.9158 -1.4406 18 6 9.8411 -6.2943 -0.8495 19 7 9.2164 -6.3928 0.4766 20 6 9.9474 -6.7339 1.5564 21 8 9.4202 -6.8113 2.6458 22 6 11.4200 -7.0192 1.4099 23 6 12.0080 -7.3791 2.7758 24 6 12.4759 -6.1587 3.5860 25 6 13.6862 -7.0054 4.0138 26 6 13.4837 -7.8075 2.7175 27 6 7.7798 -6.1119 0.6042 28 1 -0.4849 0.8401 0.0004 29 1 3.6440 -3.4306 -0.8924 30 1 3.6434 -3.4326 0.8876 31 1 5.4291 -5.2435 -0.0073 32 1 7.5339 -5.4827 -2.0242 33 1 7.7879 -3.7267 -1.8839 34 1 9.9044 -4.8647 -2.4625 35 1 10.0078 -4.1445 -0.8373 36 1 9.4397 -7.0706 -1.5010 37 1 10.9203 -6.4165 -0.7575 38 1 11.5619 -7.8525 0.7218 39 1 11.9241 -6.1354 1.0191 40 1 11.3764 -8.0642 3.3412 41 1 12.7401 -5.3000 2.9687 42 1 11.8107 -5.9003 4.4098 43 1 13.5138 -7.5876 4.9190 44 1 14.6228 -6.4484 4.0408 45 1 13.6321 -8.8804 2.8402 46 1 14.0230 -7.4009 1.8620 47 1 7.4990 -6.1123 1.6574 48 1 7.2103 -6.8736 0.0717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070589333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:57 Heat of formation + Delta-G solvation = -89.152711 kcal Electronic energy + Delta-G solvation = -26929.245612 eV Core-core repulsion = 23109.337178 eV Total energy + Delta-G solvation = -3819.908434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.60234 -40.71458 -39.45467 -38.24884 -35.74433 -34.68572 -33.44131 -32.31410 -31.30713 -29.58299 -27.86162 -26.64563 -26.42268 -24.62310 -23.80062 -22.21846 -21.66356 -20.30301 -20.07351 -19.72843 -18.25810 -17.99390 -17.37283 -17.08329 -17.07608 -16.54433 -16.42275 -16.08122 -15.76007 -15.43157 -15.24894 -15.13023 -14.99728 -14.78791 -14.46165 -14.29273 -13.73601 -13.69247 -13.58336 -13.36090 -13.28166 -13.03002 -12.82756 -12.68162 -12.50059 -12.34041 -12.13401 -11.99408 -11.89163 -11.86353 -11.45243 -11.23409 -11.18489 -11.08636 -11.05618 -10.74181 -10.55744 -10.25115 -9.68887 -9.01530 -8.52933 -6.23953 0.95713 1.29706 1.42976 1.49552 1.52325 1.62300 1.84029 2.23173 2.34580 2.70566 2.85219 3.42862 3.60366 3.74409 3.74583 3.80653 3.83177 3.95328 3.99443 4.03459 4.06257 4.20308 4.21525 4.40775 4.44482 4.48237 4.54024 4.62537 4.67589 4.73326 4.78682 4.86430 4.88601 4.92462 5.02715 5.04127 5.10417 5.16363 5.18128 5.21795 5.36868 5.40411 5.53122 5.64742 5.69386 6.10075 6.35359 6.42276 6.92187 7.13631 7.16560 8.59394 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.001952 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.500742 B =14344.352246 C =14745.524185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.239 1.239 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.176 6.176 10 C -0.111 4.111 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.708 5.708 14 C 0.138 3.862 15 H 0.056 0.944 16 C -0.128 4.128 17 C -0.128 4.128 18 C 0.104 3.896 19 N -0.611 5.611 20 C 0.507 3.493 21 O -0.587 6.587 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.122 4.122 27 C 0.112 3.888 28 H 0.277 0.723 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.418 0.582 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.692 -21.076 -2.918 36.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.163 1.163 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.262 4.262 11 C 0.324 3.676 12 O -0.438 6.438 13 N -0.362 5.362 14 C 0.032 3.968 15 H 0.074 0.926 16 C -0.167 4.167 17 C -0.167 4.167 18 C -0.018 4.018 19 N -0.344 5.344 20 C 0.298 3.702 21 O -0.467 6.467 22 C -0.162 4.162 23 C -0.120 4.120 24 C -0.183 4.183 25 C -0.181 4.181 26 C -0.160 4.160 27 C -0.012 4.012 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.255 0.745 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.092 0.908 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 30.528 -19.503 -2.338 36.301 hybrid contribution -2.066 -0.226 0.346 2.107 sum 28.462 -19.729 -1.992 34.688 Atomic orbital electron populations 1.70019 1.07256 1.29013 1.49084 1.25562 0.95290 1.02240 0.92902 0.85865 0.80596 0.79633 0.80266 1.18517 1.18340 1.16283 1.22456 0.90195 0.96725 1.58299 0.91902 1.84720 1.06506 1.06143 1.97594 1.23269 0.95679 0.99685 1.07566 1.19954 0.89432 0.83266 0.74944 1.90690 1.59294 1.43797 1.50067 1.45672 1.08033 1.07060 1.75435 1.21240 0.80268 0.97302 0.97997 0.92616 1.21914 0.97387 1.02470 0.94915 1.21902 0.94298 0.97326 1.03188 1.22123 1.00367 0.97520 0.81746 1.48198 1.08571 1.68165 1.09478 1.21517 0.90642 0.75183 0.82861 1.90693 1.74183 1.53955 1.27853 1.21807 0.89103 1.05373 0.99871 1.22327 0.96462 0.98272 0.94965 1.23022 0.97945 0.97431 0.99932 1.22808 0.98194 0.98797 0.98308 1.22937 0.94101 1.00631 0.98298 1.21600 0.82660 0.94782 1.02121 0.91357 0.86481 0.86969 0.74481 0.89303 0.93496 0.87618 0.92642 0.88566 0.86495 0.85595 0.86672 0.90696 0.89626 0.94001 0.90732 0.90533 0.90721 0.88075 0.90830 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 13.97 21.65 0.30 -55.70 16 2 C 0.05 2.69 5.50 84.86 0.47 3.16 16 3 Si 0.91 45.36 27.74 68.60 1.90 47.26 16 4 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 7 C -0.53 -30.99 10.04 67.95 0.68 -30.31 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 10 C -0.11 -4.18 6.16 71.23 0.44 -3.75 16 11 C 0.54 18.58 7.81 87.66 0.68 19.26 16 12 O -0.56 -24.17 15.53 -3.04 -0.05 -24.22 16 13 N -0.71 -16.74 5.08 -442.15 -2.25 -18.98 16 14 C 0.14 2.96 2.60 45.07 0.12 3.08 16 15 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 16 C -0.13 -2.18 5.46 30.62 0.17 -2.01 16 17 C -0.13 -1.37 6.08 30.67 0.19 -1.19 16 18 C 0.10 0.70 6.34 86.37 0.55 1.24 16 19 N -0.61 -8.97 2.97 -818.88 -2.43 -11.41 16 20 C 0.51 9.36 7.70 87.66 0.67 10.04 16 21 O -0.59 -16.78 15.17 -3.02 -0.05 -16.83 16 22 C -0.12 -1.19 3.88 29.85 0.12 -1.07 16 23 C -0.10 -1.35 3.15 -10.27 -0.03 -1.38 16 24 C -0.15 -2.22 7.63 31.12 0.24 -1.99 16 25 C -0.14 -1.62 8.08 31.12 0.25 -1.36 16 26 C -0.12 -1.00 7.64 31.12 0.24 -0.76 16 27 C 0.11 1.97 5.91 86.36 0.51 2.48 16 28 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 30 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 31 H 0.42 6.97 8.61 -92.71 -0.80 6.17 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.12 0.16 5.95 -2.38 -0.01 0.15 16 38 H 0.13 0.46 7.94 -2.39 -0.02 0.44 16 39 H 0.12 0.69 7.39 -2.39 -0.02 0.67 16 40 H 0.07 1.38 7.67 -2.39 -0.02 1.36 16 41 H 0.09 1.15 7.90 -2.38 -0.02 1.13 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.10 0.46 8.10 -2.39 -0.02 0.44 16 47 H 0.07 1.71 7.00 -2.39 -0.02 1.70 16 48 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -82.38 396.12 1.79 -80.59 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.12 Total: 13.86 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.29 Total: -4.56 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -4.38 Total: -86.09 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.09 Total: -41.05 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -82.38 1.79 -80.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070589333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.559 kcal (2) G-P(sol) polarization free energy of solvation -82.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds