Wall clock time and date at job start Wed Apr 1 2020 00:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86803 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47283 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46946 * 239.99613 * 3 2 1 6 6 H 1.48500 * 109.46876 * 120.00322 * 3 2 1 7 7 C 1.38803 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99523 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99694 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47174 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99972 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00076 * 179.97438 * 11 10 9 14 14 C 1.46919 * 120.63220 * 354.41888 * 13 11 10 15 15 C 1.53195 * 108.77401 * 126.36429 * 14 13 11 16 16 C 1.53044 * 109.30886 * 54.64146 * 15 14 13 17 17 C 1.53043 * 109.53436 * 298.62973 * 16 15 14 18 18 C 1.46932 * 120.62637 * 174.13992 * 13 11 10 19 19 H 1.08998 * 109.58031 * 113.84748 * 18 13 11 20 20 C 1.52990 * 109.58690 * 353.42058 * 18 13 11 21 21 N 1.46508 * 109.47091 * 181.62314 * 20 18 13 22 22 C 1.34771 * 120.00298 * 184.93828 * 21 20 18 23 23 O 1.21288 * 120.00257 * 0.02562 * 22 21 20 24 24 C 1.50695 * 120.00262 * 180.02562 * 22 21 20 25 25 C 1.52999 * 109.47429 * 180.02562 * 24 22 21 26 26 C 1.53005 * 117.49583 * 243.74707 * 25 24 22 27 27 C 1.53002 * 117.49972 * 175.08720 * 25 24 22 28 28 H 0.96997 * 119.99583 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47432 * 299.99911 * 10 9 7 30 30 H 1.09001 * 109.47547 * 59.99947 * 10 9 7 31 31 H 1.08997 * 109.59175 * 246.15860 * 14 13 11 32 32 H 1.09007 * 109.58559 * 6.44015 * 14 13 11 33 33 H 1.09004 * 109.49713 * 174.58743 * 15 14 13 34 34 H 1.08998 * 109.49869 * 294.65524 * 15 14 13 35 35 H 1.08996 * 109.46402 * 58.65149 * 16 15 14 36 36 H 1.09001 * 109.46026 * 178.62641 * 16 15 14 37 37 H 1.09001 * 109.49718 * 181.31702 * 17 16 15 38 38 H 1.09006 * 109.49969 * 301.38385 * 17 16 15 39 39 H 1.09002 * 109.47489 * 301.62324 * 20 18 13 40 40 H 1.08996 * 109.47731 * 61.62669 * 20 18 13 41 41 H 0.97000 * 119.99448 * 4.94136 * 21 20 18 42 42 H 1.09005 * 109.46824 * 300.00044 * 24 22 21 43 43 H 1.08999 * 109.47320 * 60.00081 * 24 22 21 44 44 H 1.08993 * 115.55025 * 29.41291 * 25 24 22 45 45 H 1.08998 * 117.50007 * 359.97438 * 26 25 24 46 46 H 1.09002 * 117.49668 * 145.02168 * 26 25 24 47 47 H 1.08994 * 117.50029 * 214.97405 * 27 25 24 48 48 H 1.09000 * 117.49896 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8444 -6.3431 0.0008 14 6 4.2914 -6.1211 -0.1232 15 6 4.9993 -6.8226 1.0402 16 6 4.5896 -8.2970 1.0668 17 6 3.0787 -8.4044 1.2854 18 6 2.3494 -7.7204 0.1305 19 1 2.5412 -8.2660 -0.7934 20 6 0.8464 -7.7006 0.4153 21 7 0.3629 -9.0735 0.5826 22 6 -0.9542 -9.3092 0.7437 23 8 -1.7394 -8.3849 0.7498 24 6 -1.4514 -10.7212 0.9163 25 6 -2.9728 -10.7101 1.0778 26 6 -3.5455 -11.2011 2.4089 27 6 -3.6854 -12.0621 1.1510 28 1 -0.4849 -0.8401 0.0004 29 1 3.1246 -3.7313 -0.8895 30 1 3.1246 -3.7313 0.8905 31 1 4.6448 -6.5336 -1.0682 32 1 4.5012 -5.0519 -0.0901 33 1 6.0787 -6.7473 0.9079 34 1 4.7138 -6.3482 1.9790 35 1 4.8534 -8.7644 0.1182 36 1 5.1107 -8.8041 1.8789 37 1 2.7910 -9.4549 1.3276 38 1 2.8110 -7.9159 2.2224 39 1 0.6569 -7.1350 1.3277 40 1 0.3246 -7.2308 -0.4184 41 1 0.9909 -9.8128 0.5774 42 1 -1.1838 -11.3104 0.0391 43 1 -0.9948 -11.1615 1.8027 44 1 -3.4928 -9.8937 0.5768 45 1 -2.8384 -11.5325 3.1694 46 1 -4.4425 -10.7079 2.7834 47 1 -4.6743 -12.1350 0.6985 48 1 -3.0703 -12.9595 1.0837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081896868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:43 Heat of formation + Delta-G solvation = -75.435605 kcal Electronic energy + Delta-G solvation = -27425.216936 eV Core-core repulsion = 23605.903321 eV Total energy + Delta-G solvation = -3819.313615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85328 -40.66310 -38.57303 -37.99751 -36.17718 -34.77126 -34.04992 -32.93752 -30.72514 -30.44028 -27.56095 -27.01508 -25.60499 -23.45122 -23.23283 -22.27088 -22.04554 -21.04467 -20.63992 -19.87636 -18.60842 -17.93666 -17.57217 -17.06812 -16.84053 -16.40240 -16.15310 -15.81190 -15.70443 -15.38507 -15.26885 -15.09523 -14.95534 -14.69953 -14.46949 -14.39993 -14.33491 -13.82710 -13.75242 -13.59344 -13.29598 -12.87468 -12.74959 -12.42564 -12.33671 -12.24366 -12.01979 -11.96978 -11.69481 -11.60718 -11.53297 -11.33672 -11.11637 -11.05066 -10.81714 -10.48624 -10.32981 -10.11551 -9.68036 -8.95021 -8.90834 -6.30616 1.13000 1.41971 1.49251 1.59034 1.66060 1.77387 1.80530 2.29944 2.34568 2.91540 3.00245 3.06941 3.39103 3.66572 3.73709 3.76138 3.78430 3.85217 4.02372 4.03309 4.08976 4.10984 4.15571 4.22689 4.27916 4.43008 4.52915 4.61249 4.63466 4.69369 4.76635 4.78549 4.84523 4.92616 5.00996 5.01535 5.05641 5.13311 5.21296 5.25287 5.30015 5.40864 5.44707 5.55800 5.60961 6.10922 6.16314 6.56939 7.02625 7.04757 7.33064 8.48086 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.002693 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.825572 B =10396.709153 C =12618.254064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.021 4.021 3 Si 1.138 2.862 4 H -0.281 1.281 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.611 4.611 8 H 0.077 0.923 9 S -0.202 6.202 10 C -0.101 4.101 11 C 0.525 3.475 12 O -0.550 6.550 13 N -0.601 5.601 14 C 0.098 3.902 15 C -0.134 4.134 16 C -0.112 4.112 17 C -0.128 4.128 18 C 0.142 3.858 19 H 0.103 0.897 20 C 0.135 3.865 21 N -0.717 5.717 22 C 0.500 3.500 23 O -0.595 6.595 24 C -0.093 4.093 25 C -0.170 4.170 26 C -0.186 4.186 27 C -0.156 4.156 28 H 0.259 0.741 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.059 0.941 41 H 0.416 0.584 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.109 0.891 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.706 -29.745 2.105 32.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.224 4.224 3 Si 0.955 3.045 4 H -0.206 1.206 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.758 4.758 8 H 0.095 0.905 9 S 0.024 5.976 10 C -0.253 4.253 11 C 0.313 3.687 12 O -0.428 6.428 13 N -0.337 5.337 14 C -0.023 4.023 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.166 4.166 18 C 0.039 3.961 19 H 0.121 0.879 20 C 0.012 3.988 21 N -0.373 5.373 22 C 0.289 3.711 23 O -0.475 6.475 24 C -0.132 4.132 25 C -0.188 4.188 26 C -0.223 4.223 27 C -0.193 4.193 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.254 0.746 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.101 0.899 47 H 0.114 0.886 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.227 -27.776 2.099 29.673 hybrid contribution 1.058 -0.863 0.072 1.367 sum 11.285 -28.639 2.172 30.859 Atomic orbital electron populations 1.70919 1.08117 1.29941 1.45962 1.27918 0.96289 1.06544 0.91670 0.82720 0.73933 0.69310 0.78564 1.20617 1.18524 1.18658 1.24010 0.96472 0.92599 1.62760 0.90517 1.85217 1.13415 1.01475 1.97445 1.23234 1.01796 0.93822 1.06422 1.20196 0.86259 0.86675 0.75574 1.90790 1.17267 1.84579 1.50130 1.48107 1.08092 1.04714 1.72751 1.22134 0.76875 1.02454 1.00872 1.21954 1.01524 0.96450 0.97330 1.21513 0.93667 0.95760 1.04004 1.21978 0.96810 1.01520 0.96301 1.21464 0.91454 0.82133 1.01049 0.87910 1.21658 0.94231 0.81883 1.01065 1.46074 1.07974 1.09273 1.73990 1.21522 0.81949 0.92771 0.74895 1.90760 1.56627 1.48352 1.51717 1.21243 0.94067 0.91249 1.06661 1.22019 0.94661 0.99088 1.03066 1.23148 1.03418 1.04165 0.91589 1.23099 1.02135 0.93728 1.00331 0.93011 0.87197 0.87592 0.88494 0.89779 0.87922 0.92966 0.89572 0.89671 0.87713 0.93256 0.95101 0.92278 0.74583 0.85432 0.85763 0.90299 0.87234 0.89852 0.88612 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.00 13.67 21.65 0.30 -59.70 16 2 C -0.02 -1.28 5.49 84.86 0.47 -0.81 16 3 Si 1.14 50.18 29.92 68.60 2.05 52.24 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.61 -36.05 9.50 67.96 0.65 -35.41 16 8 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 9 S -0.20 -11.62 19.60 -56.49 -1.11 -12.73 16 10 C -0.10 -4.17 4.51 71.24 0.32 -3.85 16 11 C 0.53 20.16 7.55 87.66 0.66 20.82 16 12 O -0.55 -26.39 11.43 -3.03 -0.03 -26.42 16 13 N -0.60 -15.54 2.98 -795.83 -2.37 -17.91 16 14 C 0.10 1.68 6.35 86.36 0.55 2.23 16 15 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 16 C -0.11 -0.99 5.89 30.62 0.18 -0.81 16 17 C -0.13 -1.71 5.07 30.53 0.15 -1.55 16 18 C 0.14 2.95 3.09 44.83 0.14 3.08 16 19 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 20 C 0.14 4.14 3.55 86.37 0.31 4.44 16 21 N -0.72 -15.37 5.33 -463.07 -2.47 -17.84 16 22 C 0.50 13.42 7.83 87.66 0.69 14.11 16 23 O -0.59 -24.51 15.56 -3.05 -0.05 -24.56 16 24 C -0.09 -1.41 5.98 29.85 0.18 -1.24 16 25 C -0.17 -3.39 5.41 -10.79 -0.06 -3.45 16 26 C -0.19 -3.11 10.18 30.62 0.31 -2.80 16 27 C -0.16 -2.06 10.26 30.62 0.31 -1.75 16 28 H 0.26 17.81 7.12 -92.71 -0.66 17.15 16 29 H 0.11 4.07 7.71 -2.39 -0.02 4.06 16 30 H 0.11 4.02 7.92 -2.39 -0.02 4.00 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.58 5.93 -2.38 -0.01 1.57 16 33 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.10 0.74 6.88 -2.39 -0.02 0.72 16 38 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.03 1.21 7.26 -2.39 -0.02 1.19 16 40 H 0.06 2.42 6.21 -2.39 -0.01 2.40 16 41 H 0.42 4.47 7.15 -92.71 -0.66 3.80 16 42 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.12 1.12 7.88 -2.39 -0.02 1.10 16 44 H 0.08 2.22 7.31 -2.39 -0.02 2.21 16 45 H 0.11 1.43 8.03 -2.39 -0.02 1.41 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -93.46 393.30 1.77 -91.69 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.40 Total: 23.67 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 5.04 Total: -8.43 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -4.54 Total: -95.46 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.08 Total: -50.98 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.24 kcal Atomic # 16 Polarization: -11.62 SS G_CDS: -1.11 Total: -12.73 kcal Total: -93.46 1.77 -91.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081896868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.259 kcal (2) G-P(sol) polarization free energy of solvation -93.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds