Wall clock time and date at job start Tue Mar 31 2020 22:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99705 * 2 1 4 4 H 1.48498 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47020 * 299.99861 * 3 2 1 6 6 H 1.48504 * 109.47144 * 59.99746 * 3 2 1 7 7 C 1.38813 * 120.00587 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99536 * 359.72407 * 7 2 1 10 10 C 1.50240 * 130.84089 * 0.30310 * 9 7 2 11 11 H 1.08999 * 115.85960 * 359.60564 * 10 9 7 12 12 C 1.55850 * 101.05112 * 233.92907 * 10 9 7 13 13 C 1.55484 * 103.32353 * 326.97682 * 12 10 9 14 14 C 1.50243 * 130.83618 * 179.97438 * 9 7 2 15 15 H 1.08997 * 115.85766 * 359.68395 * 14 9 7 16 16 C 1.56862 * 100.58703 * 234.63143 * 14 9 7 17 17 H 1.09001 * 110.89965 * 85.22764 * 16 14 9 18 18 N 1.46498 * 110.56749 * 208.24242 * 16 14 9 19 19 C 1.34772 * 120.00229 * 269.64867 * 18 16 14 20 20 O 1.21287 * 119.99937 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00043 * 180.02562 * 19 18 16 22 22 C 1.50700 * 109.47107 * 180.02562 * 21 19 18 23 23 C 1.34001 * 126.90601 * 265.02333 * 22 21 19 24 24 O 1.34450 * 110.15348 * 179.97438 * 23 22 21 25 25 C 1.34799 * 110.89104 * 359.97438 * 24 23 22 26 26 C 1.38947 * 133.49529 * 180.02562 * 25 24 23 27 27 C 1.37852 * 119.81596 * 179.33792 * 26 25 24 28 28 C 1.38745 * 120.68430 * 0.55258 * 27 26 25 29 29 C 1.36740 * 120.41700 * 359.64780 * 28 27 26 30 30 C 1.39397 * 119.71568 * 359.97438 * 29 28 27 31 31 C 1.54849 * 103.35382 * 326.66091 * 16 14 9 32 32 H 0.96994 * 120.00505 * 359.97438 * 1 2 3 33 33 H 1.08992 * 110.62463 * 85.55012 * 12 10 9 34 34 H 1.08999 * 110.62690 * 208.57562 * 12 10 9 35 35 H 1.09009 * 110.60620 * 241.58416 * 13 12 10 36 36 H 1.08994 * 110.89569 * 118.55131 * 13 12 10 37 37 H 0.97005 * 119.99818 * 89.65778 * 18 16 14 38 38 H 1.09005 * 109.46879 * 299.99740 * 21 19 18 39 39 H 1.09001 * 109.47591 * 60.00087 * 21 19 18 40 40 H 1.08004 * 124.92126 * 359.93731 * 23 22 21 41 41 H 1.08004 * 120.08841 * 0.02562 * 26 25 24 42 42 H 1.08001 * 119.65541 * 180.18313 * 27 26 25 43 43 H 1.07999 * 119.78640 * 179.66791 * 28 27 26 44 44 H 1.08005 * 120.13619 * 179.97438 * 29 28 27 45 45 H 1.09006 * 110.62411 * 241.77802 * 31 16 14 46 46 H 1.09002 * 110.62509 * 118.76555 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0068 10 6 -0.1498 -2.6706 0.0077 11 1 -0.8013 -1.7967 0.0094 12 6 -0.2743 -3.6045 1.2492 13 6 1.0723 -4.3818 1.2493 14 6 1.8190 -3.8071 0.0083 15 1 2.9015 -3.9342 -0.0017 16 6 1.0648 -4.3757 -1.2442 17 1 1.6209 -4.1708 -2.1590 18 7 0.8313 -5.8142 -1.0951 19 6 1.7440 -6.6957 -1.5494 20 8 2.7589 -6.2980 -2.0813 21 6 1.5034 -8.1755 -1.3966 22 6 2.6655 -8.9363 -1.9813 23 6 2.7555 -9.4412 -3.2193 24 8 3.9403 -10.0550 -3.3842 25 6 4.6813 -9.9795 -2.2607 26 6 5.9464 -10.4397 -1.9166 27 6 6.4490 -10.1867 -0.6582 28 6 5.6997 -9.4857 0.2757 29 6 4.4509 -9.0278 -0.0414 30 6 3.9291 -9.2672 -1.3117 31 6 -0.2762 -3.6014 -1.2361 32 1 -0.4850 0.8400 0.0004 33 1 -0.3819 -3.0180 2.1615 34 1 -1.1132 -4.2904 1.1311 35 1 0.8979 -5.4513 1.1314 36 1 1.6352 -4.1840 2.1615 37 1 0.0197 -6.1323 -0.6695 38 1 1.4047 -8.4202 -0.3390 39 1 0.5880 -8.4509 -1.9203 40 1 1.9874 -9.3664 -3.9749 41 1 6.5388 -10.9844 -2.6369 42 1 7.4339 -10.5430 -0.3945 43 1 6.1056 -9.3003 1.2592 44 1 3.8714 -8.4829 0.6892 45 1 -1.1150 -4.2876 -1.1185 46 1 -0.3852 -3.0128 -2.1469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096242012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:00 Heat of formation + Delta-G solvation = 43.157080 kcal Electronic energy + Delta-G solvation = -29317.241827 eV Core-core repulsion = 25367.626824 eV Total energy + Delta-G solvation = -3949.615002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -42.55774 -39.91345 -38.31613 -37.95758 -34.03426 -33.84561 -32.32471 -30.74271 -30.09994 -29.33791 -29.04793 -28.30486 -26.91646 -24.17218 -23.43478 -22.42192 -21.68483 -20.95809 -19.90450 -19.47713 -18.55878 -17.48912 -17.27717 -17.04839 -16.73902 -16.03796 -15.90788 -15.24683 -15.15855 -14.84811 -14.37670 -14.20504 -13.93215 -13.90734 -13.49725 -13.16864 -12.84013 -12.41337 -12.38487 -12.27639 -12.09858 -11.80447 -11.68706 -11.49173 -11.04294 -10.99756 -10.92194 -10.89367 -10.84577 -10.23650 -10.18808 -10.07088 -9.84376 -9.57937 -9.37604 -9.23813 -8.94785 -8.73771 -8.48623 -8.25523 -6.91314 -5.73154 -3.11059 0.81039 1.25786 2.17779 2.69150 2.88628 3.38972 3.44837 3.47000 3.50692 3.68723 4.31761 4.41518 4.45721 4.71650 4.83122 4.88382 5.08026 5.19085 5.19757 5.25667 5.32822 5.33558 5.38542 5.47752 5.58620 5.76133 5.80230 5.84853 5.94762 6.06741 6.09735 6.10823 6.14442 6.28643 6.30017 6.31603 6.34006 6.51217 6.53470 6.58285 6.69221 6.81046 6.96009 6.99276 7.05074 7.27422 7.52636 7.74656 7.86465 8.16656 8.54130 9.10263 9.72775 10.53047 11.36446 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.002641 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.868811 B =10600.473892 C =11159.117551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.153 3.847 11 H 0.153 0.847 12 C -0.136 4.136 13 C -0.128 4.128 14 C 0.128 3.872 15 H 0.083 0.917 16 C 0.127 3.873 17 H 0.083 0.917 18 N -0.714 5.714 19 C 0.506 3.494 20 O -0.533 6.533 21 C -0.071 4.071 22 C -0.153 4.153 23 C 0.016 3.984 24 O -0.194 6.194 25 C 0.050 3.950 26 C -0.109 4.109 27 C -0.097 4.097 28 C -0.137 4.137 29 C -0.065 4.065 30 C -0.111 4.111 31 C -0.140 4.140 32 H 0.253 0.747 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.394 0.606 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.206 0.794 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.054 0.946 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 -22.525 -1.193 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.312 5.312 10 C 0.046 3.954 11 H 0.170 0.830 12 C -0.175 4.175 13 C -0.168 4.168 14 C 0.019 3.981 15 H 0.101 0.899 16 C 0.021 3.979 17 H 0.101 0.899 18 N -0.365 5.365 19 C 0.291 3.709 20 O -0.409 6.409 21 C -0.111 4.111 22 C -0.155 4.155 23 C -0.049 4.049 24 O -0.095 6.095 25 C 0.003 3.997 26 C -0.128 4.128 27 C -0.115 4.115 28 C -0.155 4.155 29 C -0.083 4.083 30 C -0.112 4.112 31 C -0.180 4.180 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.229 0.771 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.223 0.777 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.072 0.928 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.976 -21.992 -1.822 22.267 hybrid contribution -0.059 0.788 0.267 0.834 sum 2.917 -21.204 -1.556 21.460 Atomic orbital electron populations 1.69443 1.04982 1.24848 1.57950 1.24693 0.95649 0.97495 1.02949 0.85965 0.78707 0.83460 0.77199 1.20539 1.21774 1.21813 1.19115 0.90403 0.81888 1.42262 0.90294 1.46502 1.01620 0.98870 1.84159 1.23746 0.87705 0.95297 0.88609 0.82988 1.23137 0.95005 0.98131 1.01243 1.22962 0.97578 0.97428 0.98788 1.23377 0.96090 0.86110 0.92496 0.89896 1.22849 0.97972 0.76830 1.00233 0.89908 1.46241 1.22510 1.07232 1.60534 1.20448 0.83820 0.87847 0.78759 1.90733 1.26975 1.80274 1.42916 1.20011 0.96287 0.91607 1.03209 1.20423 0.95744 1.04534 0.94796 1.23663 0.86795 0.96964 0.97502 1.83987 1.25535 1.64772 1.35191 1.19599 0.94277 1.00991 0.84871 1.19907 0.91754 1.03473 0.97648 1.20904 0.99800 0.98519 0.92264 1.20773 0.94639 0.99977 1.00126 1.20298 0.95595 0.97975 0.94448 1.19720 0.94493 1.01489 0.95518 1.23281 0.94046 0.98422 1.02276 0.93632 0.92612 0.93634 0.93176 0.93043 0.77142 0.87984 0.87950 0.77744 0.85234 0.84938 0.85399 0.85707 0.92776 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.13 10.47 55.49 0.58 -25.55 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.92 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.21 -5.77 10.59 -15.06 -0.16 -5.93 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.59 -14.67 2.97 -145.20 -0.43 -15.11 16 10 C 0.15 3.40 4.67 -62.78 -0.29 3.10 16 11 H 0.15 3.88 5.52 -51.93 -0.29 3.60 16 12 C -0.14 -2.55 6.49 -23.89 -0.16 -2.71 16 13 C -0.13 -2.30 6.38 -23.91 -0.15 -2.45 16 14 C 0.13 2.68 5.35 -62.24 -0.33 2.34 16 15 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 16 C 0.13 2.35 3.18 -64.87 -0.21 2.14 16 17 H 0.08 1.76 7.57 -51.93 -0.39 1.37 16 18 N -0.71 -9.99 3.77 -50.86 -0.19 -10.18 16 19 C 0.51 7.35 7.82 -10.99 -0.09 7.27 16 20 O -0.53 -10.37 15.69 5.55 0.09 -10.28 16 21 C -0.07 -0.72 6.25 -29.04 -0.18 -0.90 16 22 C -0.15 -1.86 4.85 -102.66 -0.50 -2.36 16 23 C 0.02 0.17 11.89 29.24 0.35 0.52 16 24 O -0.19 -2.47 10.58 3.94 0.04 -2.43 16 25 C 0.05 0.65 7.42 -38.47 -0.29 0.36 16 26 C -0.11 -1.17 10.07 -39.46 -0.40 -1.57 16 27 C -0.10 -0.92 10.01 -39.54 -0.40 -1.31 16 28 C -0.14 -1.40 9.98 -39.94 -0.40 -1.80 16 29 C -0.07 -0.78 10.05 -39.69 -0.40 -1.18 16 30 C -0.11 -1.49 6.38 -105.16 -0.67 -2.16 16 31 C -0.14 -2.62 6.22 -24.23 -0.15 -2.77 16 32 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 35 H 0.05 0.75 6.51 -51.92 -0.34 0.41 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.39 4.34 7.97 -40.82 -0.33 4.01 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.21 1.45 8.06 -52.48 -0.42 1.02 16 41 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 45 H 0.05 0.83 7.42 -51.93 -0.39 0.45 16 46 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -33.72 375.57 -10.12 -43.84 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.33 Total: 6.84 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -4.51 Total: -9.85 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.04 Total: -50.84 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.13 Total: -12.72 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.72 -10.12 -43.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096242012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.994 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds