Wall clock time and date at job start Tue Mar 31 2020 22:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99705 * 2 1 4 4 H 1.48498 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47020 * 299.99861 * 3 2 1 6 6 H 1.48504 * 109.47144 * 59.99746 * 3 2 1 7 7 C 1.38813 * 120.00587 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99536 * 359.72407 * 7 2 1 10 10 C 1.50240 * 130.84089 * 0.30310 * 9 7 2 11 11 H 1.08999 * 115.85960 * 359.60564 * 10 9 7 12 12 C 1.55850 * 101.05112 * 233.92907 * 10 9 7 13 13 C 1.55484 * 103.32353 * 326.97682 * 12 10 9 14 14 C 1.50243 * 130.83618 * 179.97438 * 9 7 2 15 15 H 1.08997 * 115.85766 * 359.68395 * 14 9 7 16 16 C 1.56862 * 100.58703 * 234.63143 * 14 9 7 17 17 H 1.09001 * 110.89965 * 85.22764 * 16 14 9 18 18 N 1.46498 * 110.56749 * 208.24242 * 16 14 9 19 19 C 1.34772 * 120.00229 * 269.64867 * 18 16 14 20 20 O 1.21287 * 119.99937 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00043 * 180.02562 * 19 18 16 22 22 C 1.50700 * 109.47107 * 180.02562 * 21 19 18 23 23 C 1.34001 * 126.90601 * 265.02333 * 22 21 19 24 24 O 1.34450 * 110.15348 * 179.97438 * 23 22 21 25 25 C 1.34799 * 110.89104 * 359.97438 * 24 23 22 26 26 C 1.38947 * 133.49529 * 180.02562 * 25 24 23 27 27 C 1.37852 * 119.81596 * 179.33792 * 26 25 24 28 28 C 1.38745 * 120.68430 * 0.55258 * 27 26 25 29 29 C 1.36740 * 120.41700 * 359.64780 * 28 27 26 30 30 C 1.39397 * 119.71568 * 359.97438 * 29 28 27 31 31 C 1.54849 * 103.35382 * 326.66091 * 16 14 9 32 32 H 0.96994 * 120.00505 * 359.97438 * 1 2 3 33 33 H 1.08992 * 110.62463 * 85.55012 * 12 10 9 34 34 H 1.08999 * 110.62690 * 208.57562 * 12 10 9 35 35 H 1.09009 * 110.60620 * 241.58416 * 13 12 10 36 36 H 1.08994 * 110.89569 * 118.55131 * 13 12 10 37 37 H 0.97005 * 119.99818 * 89.65778 * 18 16 14 38 38 H 1.09005 * 109.46879 * 299.99740 * 21 19 18 39 39 H 1.09001 * 109.47591 * 60.00087 * 21 19 18 40 40 H 1.08004 * 124.92126 * 359.93731 * 23 22 21 41 41 H 1.08004 * 120.08841 * 0.02562 * 26 25 24 42 42 H 1.08001 * 119.65541 * 180.18313 * 27 26 25 43 43 H 1.07999 * 119.78640 * 179.66791 * 28 27 26 44 44 H 1.08005 * 120.13619 * 179.97438 * 29 28 27 45 45 H 1.09006 * 110.62411 * 241.77802 * 31 16 14 46 46 H 1.09002 * 110.62509 * 118.76555 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0068 10 6 -0.1498 -2.6706 0.0077 11 1 -0.8013 -1.7967 0.0094 12 6 -0.2743 -3.6045 1.2492 13 6 1.0723 -4.3818 1.2493 14 6 1.8190 -3.8071 0.0083 15 1 2.9015 -3.9342 -0.0017 16 6 1.0648 -4.3757 -1.2442 17 1 1.6209 -4.1708 -2.1590 18 7 0.8313 -5.8142 -1.0951 19 6 1.7440 -6.6957 -1.5494 20 8 2.7589 -6.2980 -2.0813 21 6 1.5034 -8.1755 -1.3966 22 6 2.6655 -8.9363 -1.9813 23 6 2.7555 -9.4412 -3.2193 24 8 3.9403 -10.0550 -3.3842 25 6 4.6813 -9.9795 -2.2607 26 6 5.9464 -10.4397 -1.9166 27 6 6.4490 -10.1867 -0.6582 28 6 5.6997 -9.4857 0.2757 29 6 4.4509 -9.0278 -0.0414 30 6 3.9291 -9.2672 -1.3117 31 6 -0.2762 -3.6014 -1.2361 32 1 -0.4850 0.8400 0.0004 33 1 -0.3819 -3.0180 2.1615 34 1 -1.1132 -4.2904 1.1311 35 1 0.8979 -5.4513 1.1314 36 1 1.6352 -4.1840 2.1615 37 1 0.0197 -6.1323 -0.6695 38 1 1.4047 -8.4202 -0.3390 39 1 0.5880 -8.4509 -1.9203 40 1 1.9874 -9.3664 -3.9749 41 1 6.5388 -10.9844 -2.6369 42 1 7.4339 -10.5430 -0.3945 43 1 6.1056 -9.3003 1.2592 44 1 3.8714 -8.4829 0.6892 45 1 -1.1150 -4.2876 -1.1185 46 1 -0.3852 -3.0128 -2.1469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096242012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:59 Heat of formation + Delta-G solvation = 23.215370 kcal Electronic energy + Delta-G solvation = -29318.106564 eV Core-core repulsion = 25367.626824 eV Total energy + Delta-G solvation = -3950.479740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.38980 -41.34234 -39.72686 -38.74597 -35.41952 -34.85433 -34.17866 -31.58057 -31.06395 -30.96361 -30.59335 -29.55660 -28.19636 -26.07257 -24.24727 -23.23475 -23.03986 -22.26926 -21.34516 -20.73656 -20.11793 -18.93907 -18.28370 -18.02323 -17.97103 -17.00472 -16.81750 -16.74765 -16.49130 -16.37831 -15.93298 -15.49372 -15.06268 -14.83682 -14.67565 -14.16413 -14.07811 -13.82258 -13.60360 -13.47285 -13.20599 -13.17680 -12.98131 -12.86999 -12.80683 -12.57893 -12.48842 -12.34505 -11.99137 -11.89284 -11.79133 -11.54456 -11.21511 -11.09367 -11.03788 -10.78627 -10.63351 -9.93355 -9.57414 -9.07330 -8.85101 -7.80729 -5.19743 0.00827 0.42105 1.32765 1.44441 1.45077 1.54747 1.76810 1.90974 2.35644 2.51788 2.81021 3.32554 3.52741 3.53922 3.62566 3.91327 3.95398 4.02626 4.11691 4.15747 4.17064 4.26848 4.42150 4.45425 4.48747 4.50954 4.60091 4.62721 4.66343 4.71990 4.73813 4.83254 4.99485 5.02693 5.07851 5.16304 5.26993 5.29019 5.34200 5.37945 5.47485 5.50982 5.54189 5.57274 5.74021 5.79258 5.89760 6.22034 6.28181 6.74111 7.05361 7.44118 7.68453 8.54604 9.25989 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.002641 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.868811 B =10600.473892 C =11159.117551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.068 0.932 9 N -0.621 5.621 10 C 0.137 3.863 11 H 0.118 0.882 12 C -0.124 4.124 13 C -0.113 4.113 14 C 0.118 3.882 15 H 0.059 0.941 16 C 0.147 3.853 17 H 0.047 0.953 18 N -0.698 5.698 19 C 0.507 3.493 20 O -0.588 6.588 21 C -0.057 4.057 22 C -0.177 4.177 23 C 0.014 3.986 24 O -0.207 6.207 25 C 0.018 3.982 26 C -0.119 4.119 27 C -0.096 4.096 28 C -0.140 4.140 29 C -0.089 4.089 30 C -0.138 4.138 31 C -0.125 4.125 32 H 0.249 0.751 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.416 0.584 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.241 0.759 41 H 0.149 0.851 42 H 0.166 0.834 43 H 0.151 0.849 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -25.161 -0.596 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.255 4.255 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.353 4.353 8 H 0.086 0.914 9 N -0.343 5.343 10 C 0.031 3.969 11 H 0.135 0.865 12 C -0.163 4.163 13 C -0.152 4.152 14 C 0.010 3.990 15 H 0.077 0.923 16 C 0.040 3.960 17 H 0.065 0.935 18 N -0.351 5.351 19 C 0.295 3.705 20 O -0.467 6.467 21 C -0.097 4.097 22 C -0.179 4.179 23 C -0.050 4.050 24 O -0.109 6.109 25 C -0.029 4.029 26 C -0.137 4.137 27 C -0.114 4.114 28 C -0.157 4.157 29 C -0.107 4.107 30 C -0.139 4.139 31 C -0.164 4.164 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.255 0.745 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.257 0.743 41 H 0.167 0.833 42 H 0.183 0.817 43 H 0.169 0.831 44 H 0.147 0.853 45 H 0.118 0.882 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.077 -24.689 -1.203 24.806 hybrid contribution 0.302 1.557 0.060 1.587 sum 2.379 -23.133 -1.142 23.283 Atomic orbital electron populations 1.69669 1.05791 1.24971 1.58821 1.25385 0.96565 1.00078 1.03509 0.85070 0.77825 0.79973 0.76835 1.20055 1.21875 1.21663 1.19312 0.90385 0.83743 1.41894 0.91427 1.46771 1.03197 0.99500 1.84808 1.23682 0.85748 0.95624 0.91859 0.86452 1.23030 0.96940 0.97945 0.98365 1.22864 0.96346 0.99438 0.96534 1.23519 0.95477 0.84822 0.95219 0.92299 1.22213 0.96926 0.79549 0.97342 0.93467 1.45951 1.23495 1.05026 1.60635 1.21280 0.82543 0.89648 0.77051 1.90727 1.29328 1.81437 1.45223 1.20055 0.97134 0.87198 1.05280 1.20756 0.96239 1.05515 0.95341 1.24415 0.86697 0.95795 0.98107 1.83966 1.26266 1.65247 1.35433 1.20069 0.95391 1.02247 0.85170 1.20324 0.91322 1.03365 0.98669 1.21336 1.00947 0.97581 0.91515 1.21159 0.94112 0.99132 1.01337 1.20540 0.96700 0.99001 0.94467 1.20121 0.95505 1.02063 0.96193 1.23105 0.95587 0.98230 0.99516 0.94126 0.94685 0.89066 0.89051 0.94033 0.74541 0.85541 0.83757 0.74337 0.83348 0.81692 0.83123 0.85277 0.88203 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.94 10.47 21.65 0.23 -54.72 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 3 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.22 -12.88 10.59 84.03 0.89 -11.99 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 9 N -0.62 -31.64 2.97 -613.30 -1.82 -33.46 16 10 C 0.14 6.05 4.67 46.24 0.22 6.26 16 11 H 0.12 6.13 5.52 -2.39 -0.01 6.12 16 12 C -0.12 -4.37 6.49 32.43 0.21 -4.16 16 13 C -0.11 -3.80 6.38 32.42 0.21 -3.59 16 14 C 0.12 4.93 5.35 46.59 0.25 5.18 16 15 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 16 C 0.15 5.32 3.18 46.98 0.15 5.47 16 17 H 0.05 2.06 7.57 -2.39 -0.02 2.04 16 18 N -0.70 -17.36 3.77 -433.20 -1.63 -18.99 16 19 C 0.51 13.59 7.82 87.66 0.69 14.28 16 20 O -0.59 -22.84 15.69 -3.05 -0.05 -22.89 16 21 C -0.06 -0.95 6.25 29.10 0.18 -0.77 16 22 C -0.18 -4.00 4.85 -18.59 -0.09 -4.09 16 23 C 0.01 0.29 11.89 66.85 0.79 1.09 16 24 O -0.21 -5.21 10.58 -8.83 -0.09 -5.31 16 25 C 0.02 0.46 7.42 22.99 0.17 0.63 16 26 C -0.12 -2.43 10.07 22.35 0.23 -2.20 16 27 C -0.10 -1.65 10.01 22.30 0.22 -1.43 16 28 C -0.14 -2.66 9.98 22.04 0.22 -2.44 16 29 C -0.09 -2.08 10.05 22.20 0.22 -1.86 16 30 C -0.14 -3.60 6.38 -20.21 -0.13 -3.73 16 31 C -0.12 -4.48 6.22 32.22 0.20 -4.28 16 32 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 2.40 7.85 -2.39 -0.02 2.38 16 35 H 0.09 2.32 6.51 -2.38 -0.02 2.30 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.42 6.87 7.97 -92.70 -0.74 6.13 16 38 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.24 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 44 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 45 H 0.10 2.64 7.42 -2.38 -0.02 2.63 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -79.79 375.57 4.02 -75.77 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.27 Total: 21.61 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.09 Total: -10.72 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -3.23 Total: -107.16 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.14 Total: -28.19 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -79.79 4.02 -75.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096242012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.981 kcal (2) G-P(sol) polarization free energy of solvation -79.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds