Wall clock time and date at job start Wed Apr 1 2020 00:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 119.99727 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00135 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99983 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00018 * 3 2 1 7 7 C 1.38798 * 119.99922 * 180.27859 * 2 1 3 8 8 H 1.08001 * 119.99840 * 359.71862 * 7 2 1 9 9 S 1.76195 * 119.99970 * 179.72448 * 7 2 1 10 10 C 1.80992 * 100.00161 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47562 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99513 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00419 * 179.97438 * 11 10 9 14 14 C 1.47081 * 120.88269 * 359.72707 * 13 11 10 15 15 C 1.53694 * 108.27507 * 128.75114 * 14 13 11 16 16 N 1.46903 * 109.25839 * 54.08585 * 15 14 13 17 17 C 1.46894 * 110.99829 * 172.60139 * 16 15 14 18 18 C 1.53001 * 109.47717 * 294.30109 * 17 16 15 19 19 H 1.09001 * 115.55824 * 330.62515 * 18 17 16 20 20 C 1.53171 * 117.52078 * 116.38948 * 18 17 16 21 21 C 1.52129 * 117.52294 * 184.76672 * 18 17 16 22 22 C 1.54034 * 121.47014 * 141.71808 * 21 18 17 23 23 C 1.55186 * 101.82605 * 195.70308 * 22 21 18 24 24 O 1.44453 * 103.63327 * 36.32985 * 23 22 21 25 25 C 1.43990 * 107.04877 * 320.42942 * 24 23 22 26 26 C 1.46894 * 111.26714 * 296.75649 * 16 15 14 27 27 C 1.47088 * 120.88316 * 180.02562 * 13 11 10 28 28 H 0.96999 * 120.00112 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00138 * 10 9 7 30 30 H 1.09004 * 109.47321 * 60.00234 * 10 9 7 31 31 H 1.09000 * 109.62819 * 248.52170 * 14 13 11 32 32 H 1.08998 * 109.62418 * 9.10438 * 14 13 11 33 33 H 1.08995 * 109.65032 * 294.08024 * 15 14 13 34 34 H 1.09001 * 109.43713 * 173.96144 * 15 14 13 35 35 H 1.08998 * 109.47225 * 54.30602 * 17 16 15 36 36 H 1.09007 * 109.46852 * 174.30494 * 17 16 15 37 37 H 1.08997 * 117.52753 * 214.85401 * 20 18 17 38 38 H 1.09004 * 117.52235 * 359.95795 * 20 18 17 39 39 H 1.08999 * 110.95749 * 313.83413 * 22 21 18 40 40 H 1.09001 * 110.95766 * 77.56961 * 22 21 18 41 41 H 1.09004 * 110.59451 * 277.79007 * 23 22 21 42 42 H 1.09003 * 110.72201 * 154.92813 * 23 22 21 43 43 H 1.08998 * 109.97305 * 266.94132 * 25 24 23 44 44 H 1.08996 * 109.97294 * 145.66671 * 25 24 23 45 45 H 1.09000 * 109.49371 * 303.14115 * 26 16 15 46 46 H 1.09001 * 109.49145 * 183.06356 * 26 16 15 47 47 H 1.09003 * 109.62490 * 350.89326 * 27 13 11 48 48 H 1.08992 * 109.63092 * 111.28232 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4403 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2020 -0.0058 8 1 1.4703 -2.1373 -0.0058 9 16 3.7722 -1.2020 -0.0132 10 6 4.0866 -2.9844 -0.0181 11 6 5.5730 -3.2324 -0.0254 12 8 6.3439 -2.2962 -0.0267 13 7 6.0456 -4.4946 -0.0295 14 6 5.1283 -5.6443 -0.0209 15 6 5.5314 -6.5909 -1.1626 16 7 6.9543 -6.9314 -1.0303 17 6 7.3391 -7.9696 -1.9956 18 6 6.6124 -9.2734 -1.6593 19 1 6.3730 -9.4202 -0.6061 20 6 5.6222 -9.8187 -2.6929 21 6 6.9630 -10.5055 -2.4800 22 6 7.0574 -11.9011 -1.8350 23 6 7.8162 -12.7043 -2.9247 24 8 8.7523 -11.7457 -3.4644 25 6 8.0639 -10.4837 -3.5470 26 6 7.8025 -5.7405 -1.1717 27 6 7.4925 -4.7589 -0.0361 28 1 -0.4850 0.8400 0.0004 29 1 3.6474 -3.4333 0.8728 30 1 3.6400 -3.4297 -0.9071 31 1 5.2025 -6.1648 0.9339 32 1 4.1062 -5.2982 -0.1741 33 1 5.3622 -6.1014 -2.1217 34 1 4.9331 -7.5005 -1.1079 35 1 7.0656 -7.6501 -3.0011 36 1 8.4160 -8.1307 -1.9458 37 1 4.7320 -10.3249 -2.3196 38 1 5.4882 -9.2480 -3.6120 39 1 7.6300 -11.8644 -0.9083 40 1 6.0655 -12.3188 -1.6626 41 1 7.1282 -13.0456 -3.6983 42 1 8.3445 -13.5494 -2.4832 43 1 7.6213 -10.3651 -4.5361 44 1 8.7582 -9.6672 -3.3491 45 1 7.6017 -5.2627 -2.1306 46 1 8.8513 -6.0332 -1.1232 47 1 8.0342 -3.8272 -0.1994 48 1 7.7899 -5.1928 0.9185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112630330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:44 Heat of formation + Delta-G solvation = -64.637921 kcal Electronic energy + Delta-G solvation = -27050.595938 eV Core-core repulsion = 23231.750545 eV Total energy + Delta-G solvation = -3818.845393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.34319 -40.85933 -39.12670 -37.35967 -35.38830 -34.67564 -32.67750 -31.42893 -30.86543 -29.20221 -28.14986 -27.84261 -25.77062 -24.72985 -23.74760 -22.50809 -21.70521 -20.40968 -20.06935 -19.53591 -18.32174 -17.35614 -17.21772 -17.00284 -16.85015 -16.76843 -16.33317 -16.15630 -15.89479 -15.75280 -15.43565 -15.08312 -14.93623 -14.78584 -14.63499 -14.03169 -13.82584 -13.63180 -13.50550 -13.38122 -13.33648 -13.05491 -13.02503 -12.67736 -12.56617 -12.39538 -12.27769 -12.23356 -12.08769 -11.86959 -11.79008 -11.17826 -10.95686 -10.88499 -10.80375 -10.53180 -10.50719 -9.88275 -9.33551 -9.01294 -8.52058 -6.23185 0.96142 1.30690 1.45106 1.49139 1.52865 2.02555 2.24346 2.57858 2.67652 2.85185 2.86124 2.99510 3.37438 3.49474 3.71910 3.80857 3.88507 3.96793 3.99995 4.09376 4.15120 4.23333 4.26475 4.30943 4.37377 4.41643 4.48450 4.51368 4.54081 4.67267 4.71793 4.74345 4.78499 4.80054 4.84843 4.87045 4.88205 4.94732 5.04639 5.07409 5.11987 5.28579 5.44681 5.70332 5.87510 5.96022 5.98293 6.10837 6.25383 6.93133 7.04702 8.60118 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.001948 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.397761 B =14373.379146 C =15056.094598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.238 1.238 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.177 6.177 10 C -0.105 4.105 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.609 5.609 14 C 0.105 3.895 15 C 0.047 3.953 16 N -0.534 5.534 17 C 0.087 3.913 18 C -0.119 4.119 19 H 0.117 0.883 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.116 4.116 23 C 0.043 3.957 24 O -0.404 6.404 25 C 0.079 3.921 26 C 0.050 3.950 27 C 0.117 3.883 28 H 0.277 0.723 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.110 0.890 35 H 0.036 0.964 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.027 0.973 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.740 -27.546 -4.754 32.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.162 1.162 6 H -0.183 1.183 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.256 4.256 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.343 5.343 14 C -0.017 4.017 15 C -0.082 4.082 16 N -0.259 5.259 17 C -0.040 4.040 18 C -0.138 4.138 19 H 0.135 0.865 20 C -0.193 4.193 21 C -0.163 4.163 22 C -0.153 4.153 23 C -0.033 4.033 24 O -0.324 6.324 25 C 0.002 3.998 26 C -0.079 4.079 27 C -0.006 4.006 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.128 0.872 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.046 0.954 46 H 0.126 0.874 47 H 0.097 0.903 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.999 -26.317 -4.363 31.632 hybrid contribution -1.526 0.197 -0.766 1.719 sum 15.472 -26.121 -5.129 30.789 Atomic orbital electron populations 1.70011 1.07208 1.29003 1.49081 1.25543 0.95280 1.02179 0.92928 0.85883 0.80654 0.79723 0.80211 1.18701 1.16209 1.18296 1.22434 0.90058 0.96736 1.58269 0.91801 1.84742 1.06665 1.06093 1.97558 1.23262 0.95820 0.99544 1.06984 1.20033 0.89575 0.82916 0.75331 1.90671 1.59285 1.43345 1.50987 1.48174 1.08301 1.04844 1.72999 1.22213 0.93367 0.85513 1.00605 1.22557 0.89689 0.99596 0.96317 1.61923 1.03140 1.09439 1.51373 1.21657 1.00132 0.89447 0.92788 1.22189 1.01736 0.91895 0.97952 0.86466 1.23217 0.92655 1.02685 1.00741 1.22270 0.98346 0.94813 1.00891 1.22605 1.02161 0.91995 0.98556 1.23736 0.91870 0.92545 0.95191 1.88900 1.37618 1.20063 1.85785 1.22571 0.93341 0.86731 0.97128 1.22427 0.99031 0.90074 0.96328 1.21770 0.79673 0.99134 0.99991 0.91360 0.86992 0.87165 0.88818 0.88847 0.95241 0.87195 0.94584 0.89679 0.87308 0.88533 0.90064 0.88738 0.91489 0.87823 0.91887 0.89500 0.95421 0.87397 0.90316 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.40 13.97 21.65 0.30 -55.10 16 2 C 0.05 2.71 5.50 84.86 0.47 3.17 16 3 Si 0.91 45.01 27.74 68.60 1.90 46.92 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.24 -11.77 6.73 99.48 0.67 -11.10 16 6 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -30.58 10.04 67.95 0.68 -29.90 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.18 -9.01 18.54 -56.49 -1.05 -10.06 16 10 C -0.11 -4.02 4.52 71.24 0.32 -3.70 16 11 C 0.53 19.04 7.73 87.66 0.68 19.72 16 12 O -0.56 -24.64 15.31 -3.04 -0.05 -24.69 16 13 N -0.61 -15.73 3.00 -816.98 -2.45 -18.18 16 14 C 0.11 1.98 6.53 86.50 0.57 2.55 16 15 C 0.05 0.73 5.49 86.54 0.48 1.20 16 16 N -0.53 -7.85 4.63 -894.27 -4.14 -11.98 16 17 C 0.09 1.03 4.39 86.30 0.38 1.41 16 18 C -0.12 -1.22 4.56 -11.02 -0.05 -1.27 16 19 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 20 C -0.16 -1.42 9.94 30.37 0.30 -1.12 16 21 C -0.16 -1.68 2.44 -52.29 -0.13 -1.80 16 22 C -0.12 -1.03 6.94 31.69 0.22 -0.81 16 23 C 0.04 0.45 7.73 72.73 0.56 1.01 16 24 O -0.40 -6.72 11.53 -148.98 -1.72 -8.44 16 25 C 0.08 1.01 7.19 72.09 0.52 1.53 16 26 C 0.05 0.83 5.62 86.39 0.49 1.32 16 27 C 0.12 2.53 6.60 86.36 0.57 3.10 16 28 H 0.28 15.51 8.31 -92.71 -0.77 14.73 16 29 H 0.11 3.93 7.99 -2.40 -0.02 3.91 16 30 H 0.11 3.88 7.67 -2.39 -0.02 3.86 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.78 6.02 -2.39 -0.01 1.76 16 33 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 1.30 7.06 -2.39 -0.02 1.28 16 35 H 0.04 0.46 7.86 -2.39 -0.02 0.44 16 36 H 0.08 0.96 7.24 -2.38 -0.02 0.94 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.91 8.04 -2.39 -0.02 0.89 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.59 8.13 -2.39 -0.02 0.57 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 1.05 6.79 -2.39 -0.02 1.04 16 45 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.11 1.36 7.99 -2.39 -0.02 1.34 16 47 H 0.08 2.02 7.06 -2.39 -0.02 2.00 16 48 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -73.41 390.49 -0.25 -73.66 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.90 Total: 11.47 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 6.05 Total: -3.60 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -6.29 Total: -85.26 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.76 Total: -33.13 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -73.41 -0.25 -73.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.023 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds