Wall clock time and date at job start Wed Apr 1 2020 00:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86789 * 120.00185 * 2 1 4 4 H 1.48501 * 109.47120 * 239.99727 * 3 2 1 5 5 H 1.48504 * 109.47359 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47137 * 119.99888 * 3 2 1 7 7 C 1.37882 * 119.99336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99153 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00588 * 359.73334 * 7 2 1 10 10 H 1.09005 * 109.50054 * 60.26518 * 9 7 2 11 11 C 1.53038 * 109.49967 * 180.33678 * 9 7 2 12 12 C 1.53043 * 109.53541 * 181.31215 * 11 9 7 13 13 C 1.53187 * 109.31386 * 298.63229 * 12 11 9 14 14 N 1.46927 * 108.77359 * 54.64186 * 13 12 11 15 15 C 1.34773 * 120.63140 * 126.43484 * 14 13 12 16 16 O 1.21350 * 120.00182 * 172.86927 * 15 14 13 17 17 C 1.49452 * 120.00141 * 352.86695 * 15 14 13 18 18 O 1.21348 * 119.99803 * 353.63671 * 17 15 14 19 19 N 1.34773 * 119.99863 * 173.63907 * 17 15 14 20 20 C 1.46507 * 119.99944 * 179.97438 * 19 17 15 21 21 C 1.52999 * 109.47124 * 179.97438 * 20 19 17 22 22 H 1.08999 * 109.57257 * 299.99842 * 21 20 19 23 23 C 1.53101 * 109.57561 * 179.74449 * 21 20 19 24 24 C 1.52580 * 109.95702 * 177.16592 * 23 21 20 25 25 C 1.52586 * 110.72210 * 70.67260 * 24 23 21 26 26 C 1.53090 * 109.95859 * 289.32547 * 25 24 23 27 27 S 1.81749 * 109.57589 * 60.25753 * 21 20 19 28 28 C 1.46931 * 118.75982 * 306.40399 * 14 13 12 29 29 H 0.97002 * 119.99990 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.45823 * 301.33376 * 11 9 7 31 31 H 1.09000 * 109.46053 * 61.29932 * 11 9 7 32 32 H 1.09001 * 109.49628 * 58.59057 * 12 11 9 33 33 H 1.09010 * 109.49403 * 178.68120 * 12 11 9 34 34 H 1.09005 * 109.58375 * 174.42333 * 13 12 11 35 35 H 1.08995 * 109.58978 * 294.84742 * 13 12 11 36 36 H 0.97002 * 120.00410 * 359.97438 * 19 17 15 37 37 H 1.08997 * 109.46918 * 300.00187 * 20 19 17 38 38 H 1.08997 * 109.46601 * 60.00062 * 20 19 17 39 39 H 1.08999 * 109.38521 * 297.31934 * 23 21 20 40 40 H 1.08997 * 109.38784 * 57.01404 * 23 21 20 41 41 H 1.08992 * 109.22509 * 190.99503 * 24 23 21 42 42 H 1.08998 * 109.22418 * 310.35857 * 24 23 21 43 43 H 1.08997 * 109.38959 * 49.47627 * 25 24 23 44 44 H 1.09003 * 109.38651 * 169.17236 * 25 24 23 45 45 H 1.09004 * 109.57579 * 182.83528 * 26 25 24 46 46 H 1.09000 * 109.57493 * 303.21682 * 26 25 24 47 47 H 1.08993 * 109.56454 * 293.79034 * 28 14 13 48 48 H 1.09008 * 109.61218 * 173.36317 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0072 10 1 0.6241 -2.5620 -0.8823 11 6 2.2449 -3.6629 0.0149 12 6 1.4808 -4.9887 -0.0114 13 6 0.6043 -5.0932 1.2406 14 7 -0.2544 -3.9034 1.3174 15 6 -1.5907 -4.0278 1.4397 16 8 -2.2765 -3.0453 1.6320 17 6 -2.2282 -5.3758 1.3385 18 8 -1.5601 -6.3414 1.0321 19 7 -3.5450 -5.5189 1.5875 20 6 -4.1700 -6.8402 1.4877 21 6 -5.6595 -6.7260 1.8180 22 1 -5.7806 -6.3434 2.8315 23 6 -6.3164 -8.1045 1.7083 24 6 -7.7872 -8.0136 2.1040 25 6 -8.5859 -7.2603 1.0444 26 6 -8.2169 -5.7747 1.0699 27 16 -6.4594 -5.5957 0.6408 28 6 0.3712 -2.5752 1.2590 29 1 -0.4850 0.8401 -0.0004 30 1 2.8880 -3.5969 -0.8627 31 1 2.8550 -3.6133 0.9167 32 1 0.8515 -5.0283 -0.9005 33 1 2.1896 -5.8167 -0.0295 34 1 -0.0155 -5.9878 1.1791 35 1 1.2372 -5.1449 2.1265 36 1 -4.0789 -4.7471 1.8327 37 1 -4.0504 -7.2230 0.4742 38 1 -3.6932 -7.5216 2.1922 39 1 -6.2393 -8.4613 0.6812 40 1 -5.8057 -8.8026 2.3715 41 1 -8.1928 -9.0195 2.2115 42 1 -7.8709 -7.4898 3.0563 43 1 -8.3606 -7.6722 0.0607 44 1 -9.6511 -7.3722 1.2467 45 1 -8.8267 -5.2344 0.3458 46 1 -8.3899 -5.3726 2.0681 47 1 0.9847 -2.4214 2.1467 48 1 -0.4021 -1.8085 1.2093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118638699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:10 Heat of formation + Delta-G solvation = -72.748766 kcal Electronic energy + Delta-G solvation = -27845.563009 eV Core-core repulsion = 24026.365904 eV Total energy + Delta-G solvation = -3819.197105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47884 -38.42470 -37.50602 -36.80863 -35.32384 -33.23903 -32.12854 -31.65486 -29.70310 -28.75851 -26.24472 -25.07578 -24.74435 -22.73301 -22.01499 -21.75280 -21.16025 -20.07126 -18.76856 -17.48589 -17.19278 -16.59337 -16.15617 -15.83326 -15.50510 -15.34537 -15.01315 -14.56194 -14.53709 -14.25400 -14.10706 -13.77329 -13.63578 -13.30211 -13.06177 -12.93457 -12.77337 -12.55150 -12.43492 -12.03363 -11.81584 -11.76600 -11.71438 -11.40709 -11.33014 -10.94066 -10.84030 -10.68593 -10.43933 -10.24182 -10.04483 -9.95754 -9.84311 -9.25869 -9.18156 -9.07919 -8.49280 -8.37931 -7.94755 -7.78097 -5.98773 -4.07081 1.35562 1.82991 2.18276 2.70364 3.33623 3.39145 3.40777 3.68992 3.94884 4.13276 4.22463 4.33239 4.44153 4.49076 4.63145 4.71255 4.78241 4.93157 5.12806 5.16535 5.26668 5.31493 5.37512 5.40959 5.51644 5.54582 5.57906 5.67944 5.73206 5.78750 5.90055 6.08977 6.29229 6.42810 6.63424 6.65938 6.78571 6.90609 7.03056 7.08619 7.21806 7.27339 7.62674 7.86498 7.98853 8.02395 8.20641 8.38753 8.62471 8.96721 9.58185 11.06783 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.002514 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.553657 B =11134.810895 C =12321.445991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.128 4.128 13 C 0.050 3.950 14 N -0.567 5.567 15 C 0.495 3.505 16 O -0.522 6.522 17 C 0.514 3.486 18 O -0.516 6.516 19 N -0.702 5.702 20 C 0.137 3.863 21 C -0.069 4.069 22 H 0.097 0.903 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.089 4.089 27 S -0.240 6.240 28 C 0.109 3.891 29 H 0.264 0.736 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.144 0.856 35 H 0.054 0.946 36 H 0.417 0.583 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.047 0.953 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.009 -18.236 5.310 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.166 4.166 13 C -0.072 4.072 14 N -0.299 5.299 15 C 0.276 3.724 16 O -0.399 6.399 17 C 0.296 3.704 18 O -0.393 6.393 19 N -0.357 5.357 20 C 0.013 3.987 21 C -0.198 4.198 22 H 0.115 0.885 23 C -0.154 4.154 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.237 4.237 27 S -0.013 6.013 28 C -0.011 4.011 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.072 0.928 36 H 0.255 0.745 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.102 0.898 47 H 0.066 0.934 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.580 -17.585 4.413 23.905 hybrid contribution -0.258 0.663 1.024 1.247 sum -15.838 -16.922 5.437 23.807 Atomic orbital electron populations 1.69865 1.05763 1.26988 1.49362 1.25064 0.94910 0.99291 0.94818 0.86627 0.79551 0.83059 0.78583 1.20276 1.21254 1.20243 1.21055 0.92924 0.90056 1.51772 0.92317 1.18970 0.92683 0.92497 0.93706 0.95259 1.21665 0.98534 0.94428 1.00450 1.21857 0.98399 0.98477 0.97837 1.23074 0.95276 0.91047 0.97760 1.48433 1.04314 1.10165 1.67013 1.19720 0.83944 0.88239 0.80536 1.90765 1.62054 1.38782 1.48296 1.20792 0.82468 0.90230 0.76870 1.90296 1.60271 1.41500 1.47274 1.45861 1.09111 1.11490 1.69195 1.21236 0.88835 0.85233 1.03428 1.23551 0.96796 0.98290 1.01188 0.88512 1.21719 0.95444 0.94559 1.03698 1.21515 0.94732 1.01381 0.98956 1.21728 1.00358 0.93525 1.00525 1.23502 0.95036 0.99800 1.05378 1.87513 1.04522 1.58925 1.50370 1.22488 0.98826 0.80751 0.99057 0.92566 0.93102 0.93275 0.92335 0.92323 0.84020 0.92787 0.74505 0.89923 0.89575 0.90055 0.90311 0.90794 0.91655 0.90469 0.90838 0.87651 0.89822 0.93423 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 11.38 55.43 0.63 -25.18 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.28 8.57 -34.44 -0.30 -14.57 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.04 1.03 2.25 -91.65 -0.21 0.83 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.38 5.11 -26.69 -0.14 -2.52 16 12 C -0.13 -2.33 6.08 -26.61 -0.16 -2.50 16 13 C 0.05 0.92 6.27 -3.71 -0.02 0.89 16 14 N -0.57 -12.17 2.97 -173.27 -0.52 -12.68 16 15 C 0.49 10.31 7.74 -11.59 -0.09 10.22 16 16 O -0.52 -12.25 15.94 5.50 0.09 -12.17 16 17 C 0.51 8.72 7.78 -11.59 -0.09 8.63 16 18 O -0.52 -8.93 13.10 5.50 0.07 -8.86 16 19 N -0.70 -9.49 5.27 -60.73 -0.32 -9.81 16 20 C 0.14 1.38 5.13 -4.04 -0.02 1.36 16 21 C -0.07 -0.55 2.65 -26.68 -0.07 -0.62 16 22 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 23 C -0.11 -0.67 5.04 -26.89 -0.14 -0.81 16 24 C -0.13 -0.64 5.61 -27.16 -0.15 -0.79 16 25 C -0.12 -0.66 5.75 -26.90 -0.15 -0.81 16 26 C -0.09 -0.61 6.45 37.20 0.24 -0.37 16 27 S -0.24 -2.42 20.94 -107.50 -2.25 -4.68 16 28 C 0.11 2.70 5.38 -3.71 -0.02 2.68 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.14 2.51 3.78 -56.75 -0.21 2.29 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.42 5.71 7.48 -40.82 -0.31 5.40 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 43 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.12 3.50 5.17 -51.92 -0.27 3.23 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -31.34 384.38 -10.86 -42.20 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.93 Total: 5.74 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.41 Total: 3.23 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.20 Total: -47.67 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.16 Total: -21.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.25 Total: -4.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.34 -10.86 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118638699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.547 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds