Wall clock time and date at job start Wed Apr 1 2020 00:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86789 * 120.00185 * 2 1 4 4 H 1.48501 * 109.47120 * 239.99727 * 3 2 1 5 5 H 1.48504 * 109.47359 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47137 * 119.99888 * 3 2 1 7 7 C 1.37882 * 119.99336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99153 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00588 * 359.73334 * 7 2 1 10 10 H 1.09005 * 109.50054 * 60.26518 * 9 7 2 11 11 C 1.53038 * 109.49967 * 180.33678 * 9 7 2 12 12 C 1.53043 * 109.53541 * 181.31215 * 11 9 7 13 13 C 1.53187 * 109.31386 * 298.63229 * 12 11 9 14 14 N 1.46927 * 108.77359 * 54.64186 * 13 12 11 15 15 C 1.34773 * 120.63140 * 126.43484 * 14 13 12 16 16 O 1.21350 * 120.00182 * 172.86927 * 15 14 13 17 17 C 1.49452 * 120.00141 * 352.86695 * 15 14 13 18 18 O 1.21348 * 119.99803 * 353.63671 * 17 15 14 19 19 N 1.34773 * 119.99863 * 173.63907 * 17 15 14 20 20 C 1.46507 * 119.99944 * 179.97438 * 19 17 15 21 21 C 1.52999 * 109.47124 * 179.97438 * 20 19 17 22 22 H 1.08999 * 109.57257 * 299.99842 * 21 20 19 23 23 C 1.53101 * 109.57561 * 179.74449 * 21 20 19 24 24 C 1.52580 * 109.95702 * 177.16592 * 23 21 20 25 25 C 1.52586 * 110.72210 * 70.67260 * 24 23 21 26 26 C 1.53090 * 109.95859 * 289.32547 * 25 24 23 27 27 S 1.81749 * 109.57589 * 60.25753 * 21 20 19 28 28 C 1.46931 * 118.75982 * 306.40399 * 14 13 12 29 29 H 0.97002 * 119.99990 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.45823 * 301.33376 * 11 9 7 31 31 H 1.09000 * 109.46053 * 61.29932 * 11 9 7 32 32 H 1.09001 * 109.49628 * 58.59057 * 12 11 9 33 33 H 1.09010 * 109.49403 * 178.68120 * 12 11 9 34 34 H 1.09005 * 109.58375 * 174.42333 * 13 12 11 35 35 H 1.08995 * 109.58978 * 294.84742 * 13 12 11 36 36 H 0.97002 * 120.00410 * 359.97438 * 19 17 15 37 37 H 1.08997 * 109.46918 * 300.00187 * 20 19 17 38 38 H 1.08997 * 109.46601 * 60.00062 * 20 19 17 39 39 H 1.08999 * 109.38521 * 297.31934 * 23 21 20 40 40 H 1.08997 * 109.38784 * 57.01404 * 23 21 20 41 41 H 1.08992 * 109.22509 * 190.99503 * 24 23 21 42 42 H 1.08998 * 109.22418 * 310.35857 * 24 23 21 43 43 H 1.08997 * 109.38959 * 49.47627 * 25 24 23 44 44 H 1.09003 * 109.38651 * 169.17236 * 25 24 23 45 45 H 1.09004 * 109.57579 * 182.83528 * 26 25 24 46 46 H 1.09000 * 109.57493 * 303.21682 * 26 25 24 47 47 H 1.08993 * 109.56454 * 293.79034 * 28 14 13 48 48 H 1.09008 * 109.61218 * 173.36317 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0072 10 1 0.6241 -2.5620 -0.8823 11 6 2.2449 -3.6629 0.0149 12 6 1.4808 -4.9887 -0.0114 13 6 0.6043 -5.0932 1.2406 14 7 -0.2544 -3.9034 1.3174 15 6 -1.5907 -4.0278 1.4397 16 8 -2.2765 -3.0453 1.6320 17 6 -2.2282 -5.3758 1.3385 18 8 -1.5601 -6.3414 1.0321 19 7 -3.5450 -5.5189 1.5875 20 6 -4.1700 -6.8402 1.4877 21 6 -5.6595 -6.7260 1.8180 22 1 -5.7806 -6.3434 2.8315 23 6 -6.3164 -8.1045 1.7083 24 6 -7.7872 -8.0136 2.1040 25 6 -8.5859 -7.2603 1.0444 26 6 -8.2169 -5.7747 1.0699 27 16 -6.4594 -5.5957 0.6408 28 6 0.3712 -2.5752 1.2590 29 1 -0.4850 0.8401 -0.0004 30 1 2.8880 -3.5969 -0.8627 31 1 2.8550 -3.6133 0.9167 32 1 0.8515 -5.0283 -0.9005 33 1 2.1896 -5.8167 -0.0295 34 1 -0.0155 -5.9878 1.1791 35 1 1.2372 -5.1449 2.1265 36 1 -4.0789 -4.7471 1.8327 37 1 -4.0504 -7.2230 0.4742 38 1 -3.6932 -7.5216 2.1922 39 1 -6.2393 -8.4613 0.6812 40 1 -5.8057 -8.8026 2.3715 41 1 -8.1928 -9.0195 2.2115 42 1 -7.8709 -7.4898 3.0563 43 1 -8.3606 -7.6722 0.0607 44 1 -9.6511 -7.3722 1.2467 45 1 -8.8267 -5.2344 0.3458 46 1 -8.3899 -5.3726 2.0681 47 1 0.9847 -2.4214 2.1467 48 1 -0.4021 -1.8085 1.2093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118638699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:09 Heat of formation + Delta-G solvation = -92.095019 kcal Electronic energy + Delta-G solvation = -27846.401926 eV Core-core repulsion = 24026.365904 eV Total energy + Delta-G solvation = -3820.036022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96109 -39.89041 -38.54594 -38.15325 -36.35329 -35.16424 -33.48644 -32.86466 -31.57146 -29.46946 -27.69063 -26.87756 -25.86607 -23.92407 -23.47679 -22.94707 -21.83917 -21.37911 -20.43991 -18.93867 -18.24692 -18.07860 -17.87679 -17.03517 -16.88160 -16.50499 -16.24698 -16.00830 -15.66235 -15.44271 -15.23661 -14.80801 -14.74956 -14.64704 -14.48241 -14.44594 -13.85790 -13.73823 -13.56994 -13.45561 -13.15265 -13.00632 -12.85110 -12.51947 -12.33907 -12.29784 -12.27834 -12.17419 -11.81026 -11.71841 -11.62291 -11.33753 -11.17096 -10.98530 -10.64835 -10.54816 -10.35243 -9.99912 -9.54776 -8.73357 -8.12103 -6.29040 0.33662 0.68837 1.33830 1.41883 1.44276 1.51724 1.55380 2.14480 2.41186 2.56363 3.15753 3.29835 3.44441 3.70908 3.87057 3.95636 4.10293 4.15898 4.18974 4.19486 4.34378 4.39705 4.49240 4.57943 4.64806 4.66535 4.70745 4.75460 4.81804 4.82671 4.98164 5.04368 5.05421 5.14121 5.15049 5.16919 5.23819 5.27153 5.37559 5.38843 5.52060 5.56533 5.83375 5.92819 5.95797 6.28885 6.43621 6.71086 6.82669 6.97843 7.40782 8.91770 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.002514 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.553657 B =11134.810895 C =12321.445991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.010 3.990 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.038 3.962 10 H -0.013 1.013 11 C -0.106 4.106 12 C -0.121 4.121 13 C 0.049 3.951 14 N -0.574 5.574 15 C 0.484 3.516 16 O -0.559 6.559 17 C 0.523 3.477 18 O -0.518 6.518 19 N -0.687 5.687 20 C 0.135 3.865 21 C -0.049 4.049 22 H 0.105 0.895 23 C -0.111 4.111 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.073 4.073 27 S -0.321 6.321 28 C 0.121 3.879 29 H 0.261 0.739 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.157 0.843 35 H 0.072 0.928 36 H 0.417 0.583 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.013 -20.601 6.395 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.019 3.981 10 H 0.005 0.995 11 C -0.144 4.144 12 C -0.159 4.159 13 C -0.071 4.071 14 N -0.306 5.306 15 C 0.267 3.733 16 O -0.438 6.438 17 C 0.304 3.696 18 O -0.396 6.396 19 N -0.339 5.339 20 C 0.011 3.989 21 C -0.178 4.178 22 H 0.123 0.877 23 C -0.151 4.151 24 C -0.163 4.163 25 C -0.159 4.159 26 C -0.221 4.221 27 S -0.095 6.095 28 C 0.000 4.000 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.173 0.827 35 H 0.091 0.909 36 H 0.254 0.746 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.124 0.876 46 H 0.109 0.891 47 H 0.063 0.937 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.593 -20.002 5.500 25.951 hybrid contribution -0.343 1.376 0.674 1.570 sum -15.936 -18.626 6.174 25.279 Atomic orbital electron populations 1.70056 1.07427 1.27496 1.50447 1.25913 0.95627 1.02979 0.94438 0.85570 0.78247 0.78536 0.79080 1.19404 1.21330 1.19134 1.21457 0.93342 0.91246 1.51390 0.91822 1.18913 0.93110 0.94019 0.92045 0.99499 1.21560 0.97705 0.94127 1.01018 1.21828 0.98665 0.98141 0.97233 1.23331 0.95321 0.89898 0.98543 1.48468 1.05180 1.09865 1.67050 1.20488 0.83679 0.89795 0.79383 1.90736 1.62804 1.40589 1.49698 1.19904 0.83588 0.88178 0.77935 1.90269 1.60589 1.40637 1.48154 1.45878 1.07708 1.13096 1.67218 1.21527 0.90164 0.83333 1.03836 1.23522 0.95000 0.98940 1.00337 0.87663 1.21732 0.96177 0.93145 1.04003 1.21517 0.93879 1.02229 0.98712 1.21725 1.01467 0.92154 1.00514 1.23544 0.91665 1.01274 1.05575 1.87781 1.08721 1.60715 1.52274 1.21952 0.97544 0.81981 0.98567 0.92962 0.92801 0.92312 0.93711 0.88250 0.82742 0.90947 0.74588 0.90414 0.87444 0.90508 0.88427 0.89202 0.91320 0.91120 0.89068 0.87558 0.89147 0.93704 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.90 11.38 21.45 0.24 -55.65 16 2 C 0.01 0.56 5.30 84.66 0.45 1.01 16 3 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.54 -30.05 8.57 25.60 0.22 -29.83 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 10 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 11 C -0.11 -4.42 5.11 30.62 0.16 -4.26 16 12 C -0.12 -4.21 6.08 30.67 0.19 -4.02 16 13 C 0.05 1.73 6.27 86.36 0.54 2.27 16 14 N -0.57 -25.05 2.97 -820.47 -2.44 -27.49 16 15 C 0.48 20.72 7.74 87.27 0.68 21.40 16 16 O -0.56 -27.58 15.94 -3.25 -0.05 -27.63 16 17 C 0.52 17.55 7.78 87.27 0.68 18.23 16 18 O -0.52 -17.15 13.10 -3.24 -0.04 -17.19 16 19 N -0.69 -18.21 5.27 -464.41 -2.45 -20.66 16 20 C 0.13 2.48 5.13 86.38 0.44 2.93 16 21 C -0.05 -0.71 2.65 30.63 0.08 -0.62 16 22 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 23 C -0.11 -1.02 5.04 30.49 0.15 -0.86 16 24 C -0.13 -0.90 5.61 30.32 0.17 -0.73 16 25 C -0.12 -1.04 5.75 30.49 0.18 -0.86 16 26 C -0.07 -0.93 6.45 72.01 0.46 -0.46 16 27 S -0.32 -6.47 20.94 -56.49 -1.18 -7.65 16 28 C 0.12 6.25 5.38 86.36 0.46 6.72 16 29 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 34 H 0.16 5.15 3.78 -78.80 -0.30 4.85 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.42 11.51 7.48 -92.71 -0.69 10.82 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 0.81 8.06 -2.39 -0.02 0.79 16 40 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 43 H 0.07 0.73 8.06 -2.39 -0.02 0.71 16 44 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.08 5.03 5.17 -2.38 -0.01 5.02 16 Total: -1.00 -71.38 384.38 0.92 -70.46 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.03 Total: 26.31 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 4.83 Total: 12.88 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -4.64 Total: -103.80 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -0.09 Total: -44.83 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -1.18 Total: -7.65 kcal Total: -71.38 0.92 -70.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118638699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.635 kcal (2) G-P(sol) polarization free energy of solvation -71.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds