Wall clock time and date at job start Wed Apr 1 2020 00:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 120.00172 * 2 1 4 4 H 1.48500 * 109.47346 * 240.00329 * 3 2 1 5 5 H 1.48507 * 109.46593 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47327 * 119.99819 * 3 2 1 7 7 C 1.38801 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99699 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00019 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47110 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00193 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99531 * 180.02562 * 11 10 9 14 14 C 1.46895 * 120.56100 * 0.02562 * 13 11 10 15 15 C 1.53252 * 108.92918 * 126.83535 * 14 13 11 16 16 C 1.52990 * 109.14116 * 54.39540 * 15 14 13 17 17 H 1.09002 * 109.47752 * 58.14788 * 16 15 14 18 18 O 1.42899 * 109.89050 * 178.42814 * 16 15 14 19 19 C 1.43079 * 113.56229 * 178.85300 * 18 16 15 20 20 C 1.53075 * 109.40435 * 301.49994 * 19 18 16 21 21 N 1.47070 * 109.39909 * 56.51501 * 20 19 18 22 22 C 1.46896 * 110.99550 * 177.90368 * 21 20 19 23 23 C 1.53003 * 109.47353 * 293.43388 * 22 21 20 24 24 C 1.52999 * 117.50291 * 243.62276 * 23 22 21 25 25 C 1.52999 * 60.00225 * 252.51457 * 24 23 22 26 26 C 1.46901 * 110.59682 * 301.57031 * 21 20 19 27 27 H 1.08993 * 109.72624 * 298.82872 * 26 21 20 28 28 C 1.46991 * 120.55334 * 179.97438 * 13 11 10 29 29 H 0.96996 * 120.00026 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47033 * 59.99536 * 10 9 7 31 31 H 1.09004 * 109.47111 * 300.00011 * 10 9 7 32 32 H 1.09003 * 109.55963 * 246.66922 * 14 13 11 33 33 H 1.08997 * 109.56270 * 7.00330 * 14 13 11 34 34 H 1.09001 * 109.52327 * 174.28870 * 15 14 13 35 35 H 1.08992 * 109.52870 * 294.42180 * 15 14 13 36 36 H 1.08997 * 109.48282 * 61.47339 * 19 18 16 37 37 H 1.08999 * 109.48280 * 181.50427 * 19 18 16 38 38 H 1.08996 * 109.48459 * 176.49836 * 20 19 18 39 39 H 1.08998 * 109.47871 * 296.52509 * 20 19 18 40 40 H 1.08999 * 109.47564 * 53.43998 * 22 21 20 41 41 H 1.09003 * 109.46725 * 173.44001 * 22 21 20 42 42 H 1.09001 * 115.54784 * 29.33588 * 23 22 21 43 43 H 1.08999 * 117.49540 * 0.02562 * 24 23 22 44 44 H 1.09003 * 117.49769 * 145.02144 * 24 23 22 45 45 H 1.09000 * 117.49476 * 252.51129 * 25 24 23 46 46 H 1.08999 * 117.50028 * 107.49072 * 25 24 23 47 47 H 1.08994 * 109.62571 * 113.79041 * 28 13 11 48 48 H 1.09002 * 109.77825 * 353.32314 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9874 -5.3028 -0.0001 12 8 0.7912 -5.5024 0.0000 13 7 2.8442 -6.3431 0.0003 14 6 4.2954 -6.1154 0.0019 15 6 4.9200 -6.8975 1.1625 16 6 4.5098 -8.3675 1.0551 17 1 4.8332 -8.7658 0.0934 18 8 5.1137 -9.1191 2.1098 19 6 4.7602 -10.5055 2.0992 20 6 3.2397 -10.6434 2.2101 21 7 2.6003 -9.8945 1.1177 22 6 1.1396 -10.0442 1.1615 23 6 0.7664 -11.4968 0.8591 24 6 -0.0523 -11.7675 -0.4048 25 6 -0.7092 -11.8853 0.9720 26 6 2.9862 -8.4780 1.1672 27 1 2.6573 -8.0398 2.1094 28 6 2.3422 -7.7246 0.0003 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7313 0.8905 31 1 3.1245 -3.7314 -0.8895 32 1 4.7200 -6.4603 -0.9409 33 1 4.4979 -5.0519 0.1279 34 1 6.0060 -6.8179 1.1127 35 1 4.5677 -6.4881 2.1091 36 1 5.0994 -10.9600 1.1685 37 1 5.2335 -11.0078 2.9428 38 1 2.9640 -11.6956 2.1396 39 1 2.9074 -10.2439 3.1682 40 1 0.7763 -9.7745 2.1531 41 1 0.6850 -9.3899 0.4176 42 1 1.5067 -12.2425 1.1489 43 1 -0.3247 -10.9107 -1.0210 44 1 0.1495 -12.6914 -0.9468 45 1 -0.9396 -12.8866 1.3357 46 1 -1.4141 -11.1059 1.2617 47 1 2.6067 -8.2102 -0.9390 48 1 1.2587 -7.7233 0.1191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176929904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:03 Heat of formation + Delta-G solvation = -39.439341 kcal Electronic energy + Delta-G solvation = -28068.066226 eV Core-core repulsion = 24250.313526 eV Total energy + Delta-G solvation = -3817.752700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84665 -39.16441 -37.91176 -36.36546 -35.53960 -32.44212 -32.30051 -31.11767 -29.57754 -28.60310 -25.93321 -25.41780 -25.01105 -22.95002 -22.63495 -22.29810 -20.65713 -20.36593 -19.22187 -17.77932 -17.11405 -16.80458 -16.22944 -16.03361 -15.81760 -15.39573 -15.25522 -14.97462 -14.81143 -14.43632 -14.12247 -13.99779 -13.85287 -13.76519 -13.21940 -13.00917 -12.77183 -12.63378 -12.46281 -12.17936 -11.92632 -11.78292 -11.70369 -11.51348 -11.32560 -11.05577 -11.04486 -11.01222 -10.79940 -10.72204 -10.56100 -10.24085 -9.83833 -9.77906 -9.41744 -9.06878 -8.71103 -8.62533 -8.24782 -6.51751 -6.22448 -3.93418 2.77905 2.97714 3.20936 3.23003 3.27891 3.33007 3.43594 3.55120 3.70557 4.19245 4.27366 4.42994 4.51930 4.61834 4.66305 4.70333 4.79085 4.86391 4.88997 4.92327 4.98039 5.08117 5.09881 5.12683 5.19769 5.32531 5.35072 5.38116 5.40622 5.47112 5.49265 5.54828 5.57417 5.62155 5.66334 5.74664 5.81494 5.84631 5.87060 5.95055 5.99903 6.08907 6.44570 6.62119 6.71241 6.89919 7.47491 7.58380 8.33978 8.49425 9.22707 10.84944 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.002599 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.933482 B =10771.940266 C =12142.399671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.537 3.463 12 O -0.516 6.516 13 N -0.621 5.621 14 C 0.111 3.889 15 C -0.128 4.128 16 C 0.102 3.898 17 H 0.070 0.930 18 O -0.380 6.380 19 C 0.065 3.935 20 C 0.016 3.984 21 N -0.525 5.525 22 C 0.078 3.922 23 C -0.147 4.147 24 C -0.173 4.173 25 C -0.182 4.182 26 C 0.041 3.959 27 H 0.056 0.944 28 C 0.123 3.877 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.342 -24.815 2.242 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.325 3.675 12 O -0.390 6.390 13 N -0.358 5.358 14 C -0.012 4.012 15 C -0.167 4.167 16 C 0.044 3.956 17 H 0.087 0.913 18 O -0.299 6.299 19 C -0.012 4.012 20 C -0.112 4.112 21 N -0.251 5.251 22 C -0.050 4.050 23 C -0.165 4.165 24 C -0.210 4.210 25 C -0.220 4.220 26 C -0.069 4.069 27 H 0.074 0.926 28 C -0.001 4.001 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.093 0.907 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.669 -25.089 1.927 26.306 hybrid contribution 1.526 1.317 0.670 2.124 sum 9.195 -23.773 2.597 25.621 Atomic orbital electron populations 1.70005 1.05962 1.27586 1.46744 1.24991 0.95026 0.99026 0.94511 0.86226 0.79243 0.81229 0.78816 1.19914 1.20817 1.19921 1.22814 0.94856 0.91596 1.59109 0.90953 1.85409 1.04927 0.96351 1.96713 1.23564 1.06575 0.95199 1.04824 1.20367 0.86168 0.86190 0.74774 1.90687 1.15192 1.85202 1.47885 1.48116 1.06479 1.05486 1.75693 1.21726 0.79798 1.01765 0.97961 1.21945 1.01909 0.92552 1.00265 1.22115 0.90238 0.92337 0.90949 0.91254 1.87990 1.70288 1.20039 1.51590 1.22640 0.93352 0.82832 1.02375 1.22843 0.95655 0.99767 0.92901 1.62178 1.08512 1.09377 1.44993 1.21825 0.87122 0.95117 1.00911 1.22225 0.94042 0.97202 1.03057 1.23012 1.03897 1.03366 0.90769 1.22993 0.95271 1.02725 1.00989 1.22621 0.96635 0.88247 0.99350 0.92575 1.21471 1.00451 0.80914 0.97248 0.92116 0.89139 0.89098 0.90963 0.88290 0.89310 0.90397 0.92261 0.88455 0.89314 0.93851 0.94041 0.89596 0.87606 0.88550 0.88946 0.88835 0.88665 0.90694 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.02 4.50 36.01 0.16 -2.86 16 11 C 0.54 10.11 7.71 -10.99 -0.08 10.03 16 12 O -0.52 -11.66 15.28 5.56 0.08 -11.58 16 13 N -0.62 -8.78 2.98 -172.76 -0.51 -9.29 16 14 C 0.11 1.19 6.33 -3.70 -0.02 1.16 16 15 C -0.13 -1.26 5.76 -26.61 -0.15 -1.42 16 16 C 0.10 1.05 2.62 -26.65 -0.07 0.98 16 17 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 18 O -0.38 -4.11 10.50 -35.23 -0.37 -4.48 16 19 C 0.07 0.53 7.00 37.20 0.26 0.79 16 20 C 0.02 0.14 5.46 -3.69 -0.02 0.12 16 21 N -0.53 -5.16 4.55 -226.29 -1.03 -6.18 16 22 C 0.08 0.76 5.02 -3.82 -0.02 0.74 16 23 C -0.15 -1.20 5.69 -90.62 -0.52 -1.72 16 24 C -0.17 -1.38 10.18 -26.73 -0.27 -1.65 16 25 C -0.18 -1.40 10.25 -26.73 -0.27 -1.67 16 26 C 0.04 0.46 1.97 -67.57 -0.13 0.33 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 C 0.12 1.55 5.27 -3.72 -0.02 1.53 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.67 7.68 -51.92 -0.40 1.27 16 31 H 0.09 1.67 7.95 -51.91 -0.41 1.26 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.05 5.92 -51.93 -0.31 0.75 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.60 6.31 -51.93 -0.33 0.27 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 41 H 0.09 0.92 5.63 -51.93 -0.29 0.63 16 42 H 0.11 0.80 6.40 -51.93 -0.33 0.47 16 43 H 0.10 0.82 8.03 -51.93 -0.42 0.40 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.10 1.40 5.37 -51.93 -0.28 1.12 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -33.61 385.95 -11.28 -44.89 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.81 Total: 0.25 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.96 Total: -6.47 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.81 Total: -40.84 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.28 Total: -16.06 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.61 -11.28 -44.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.450 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds