Wall clock time and date at job start Wed Apr 1 2020 00:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 120.00172 * 2 1 4 4 H 1.48500 * 109.47346 * 240.00329 * 3 2 1 5 5 H 1.48507 * 109.46593 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47327 * 119.99819 * 3 2 1 7 7 C 1.38801 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99699 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00019 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47110 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00193 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99531 * 180.02562 * 11 10 9 14 14 C 1.46895 * 120.56100 * 0.02562 * 13 11 10 15 15 C 1.53252 * 108.92918 * 126.83535 * 14 13 11 16 16 C 1.52990 * 109.14116 * 54.39540 * 15 14 13 17 17 H 1.09002 * 109.47752 * 58.14788 * 16 15 14 18 18 O 1.42899 * 109.89050 * 178.42814 * 16 15 14 19 19 C 1.43079 * 113.56229 * 178.85300 * 18 16 15 20 20 C 1.53075 * 109.40435 * 301.49994 * 19 18 16 21 21 N 1.47070 * 109.39909 * 56.51501 * 20 19 18 22 22 C 1.46896 * 110.99550 * 177.90368 * 21 20 19 23 23 C 1.53003 * 109.47353 * 293.43388 * 22 21 20 24 24 C 1.52999 * 117.50291 * 243.62276 * 23 22 21 25 25 C 1.52999 * 60.00225 * 252.51457 * 24 23 22 26 26 C 1.46901 * 110.59682 * 301.57031 * 21 20 19 27 27 H 1.08993 * 109.72624 * 298.82872 * 26 21 20 28 28 C 1.46991 * 120.55334 * 179.97438 * 13 11 10 29 29 H 0.96996 * 120.00026 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47033 * 59.99536 * 10 9 7 31 31 H 1.09004 * 109.47111 * 300.00011 * 10 9 7 32 32 H 1.09003 * 109.55963 * 246.66922 * 14 13 11 33 33 H 1.08997 * 109.56270 * 7.00330 * 14 13 11 34 34 H 1.09001 * 109.52327 * 174.28870 * 15 14 13 35 35 H 1.08992 * 109.52870 * 294.42180 * 15 14 13 36 36 H 1.08997 * 109.48282 * 61.47339 * 19 18 16 37 37 H 1.08999 * 109.48280 * 181.50427 * 19 18 16 38 38 H 1.08996 * 109.48459 * 176.49836 * 20 19 18 39 39 H 1.08998 * 109.47871 * 296.52509 * 20 19 18 40 40 H 1.08999 * 109.47564 * 53.43998 * 22 21 20 41 41 H 1.09003 * 109.46725 * 173.44001 * 22 21 20 42 42 H 1.09001 * 115.54784 * 29.33588 * 23 22 21 43 43 H 1.08999 * 117.49540 * 0.02562 * 24 23 22 44 44 H 1.09003 * 117.49769 * 145.02144 * 24 23 22 45 45 H 1.09000 * 117.49476 * 252.51129 * 25 24 23 46 46 H 1.08999 * 117.50028 * 107.49072 * 25 24 23 47 47 H 1.08994 * 109.62571 * 113.79041 * 28 13 11 48 48 H 1.09002 * 109.77825 * 353.32314 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9874 -5.3028 -0.0001 12 8 0.7912 -5.5024 0.0000 13 7 2.8442 -6.3431 0.0003 14 6 4.2954 -6.1154 0.0019 15 6 4.9200 -6.8975 1.1625 16 6 4.5098 -8.3675 1.0551 17 1 4.8332 -8.7658 0.0934 18 8 5.1137 -9.1191 2.1098 19 6 4.7602 -10.5055 2.0992 20 6 3.2397 -10.6434 2.2101 21 7 2.6003 -9.8945 1.1177 22 6 1.1396 -10.0442 1.1615 23 6 0.7664 -11.4968 0.8591 24 6 -0.0523 -11.7675 -0.4048 25 6 -0.7092 -11.8853 0.9720 26 6 2.9862 -8.4780 1.1672 27 1 2.6573 -8.0398 2.1094 28 6 2.3422 -7.7246 0.0003 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7313 0.8905 31 1 3.1245 -3.7314 -0.8895 32 1 4.7200 -6.4603 -0.9409 33 1 4.4979 -5.0519 0.1279 34 1 6.0060 -6.8179 1.1127 35 1 4.5677 -6.4881 2.1091 36 1 5.0994 -10.9600 1.1685 37 1 5.2335 -11.0078 2.9428 38 1 2.9640 -11.6956 2.1396 39 1 2.9074 -10.2439 3.1682 40 1 0.7763 -9.7745 2.1531 41 1 0.6850 -9.3899 0.4176 42 1 1.5067 -12.2425 1.1489 43 1 -0.3247 -10.9107 -1.0210 44 1 0.1495 -12.6914 -0.9468 45 1 -0.9396 -12.8866 1.3357 46 1 -1.4141 -11.1059 1.2617 47 1 2.6067 -8.2102 -0.9390 48 1 1.2587 -7.7233 0.1191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176929904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:02 Heat of formation + Delta-G solvation = -61.931111 kcal Electronic energy + Delta-G solvation = -28069.041543 eV Core-core repulsion = 24250.313526 eV Total energy + Delta-G solvation = -3818.728017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.81879 -40.38647 -38.63497 -37.52133 -36.30936 -34.58521 -33.38026 -32.11591 -30.73099 -29.62405 -27.70889 -26.76131 -25.88330 -23.84143 -23.31115 -23.14682 -21.53673 -21.10643 -20.57014 -19.56690 -18.41479 -17.62704 -17.23188 -17.06978 -16.89166 -16.87308 -16.33867 -16.22643 -15.96759 -15.75110 -15.20366 -15.01281 -14.89790 -14.70318 -14.46661 -14.21685 -14.13282 -13.68488 -13.40746 -13.35786 -13.16639 -12.98331 -12.86349 -12.63457 -12.57875 -12.39774 -12.34009 -12.12218 -11.81681 -11.74737 -11.48577 -11.23075 -11.12678 -10.96939 -10.92188 -10.57723 -10.27246 -9.83247 -9.54546 -8.68110 -8.34437 -6.13102 1.22697 1.43976 1.44432 1.49907 1.54723 1.95437 2.27274 2.54692 2.68735 2.97325 2.99818 3.22184 3.43099 3.61791 3.69942 3.78533 3.81794 3.97099 3.97909 4.03664 4.10835 4.13076 4.22487 4.24278 4.28958 4.35176 4.42532 4.45385 4.51150 4.58400 4.61330 4.66408 4.67809 4.74895 4.78981 4.81839 4.92291 4.94811 5.03102 5.15747 5.24445 5.25185 5.40080 5.41856 5.81438 5.84910 6.15571 6.18348 6.20461 7.05653 7.06816 8.74620 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.002599 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.933482 B =10771.940266 C =12142.399671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.154 6.154 10 C -0.124 4.124 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.608 5.608 14 C 0.104 3.896 15 C -0.122 4.122 16 C 0.105 3.895 17 H 0.083 0.917 18 O -0.395 6.395 19 C 0.062 3.938 20 C 0.016 3.984 21 N -0.521 5.521 22 C 0.079 3.921 23 C -0.146 4.146 24 C -0.175 4.175 25 C -0.181 4.181 26 C 0.049 3.951 27 H 0.027 0.973 28 C 0.125 3.875 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.030 0.970 40 H 0.028 0.972 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.649 -26.118 1.933 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.074 5.926 10 C -0.275 4.275 11 C 0.323 3.677 12 O -0.443 6.443 13 N -0.343 5.343 14 C -0.018 4.018 15 C -0.161 4.161 16 C 0.047 3.953 17 H 0.101 0.899 18 O -0.315 6.315 19 C -0.014 4.014 20 C -0.112 4.112 21 N -0.246 5.246 22 C -0.049 4.049 23 C -0.164 4.164 24 C -0.212 4.212 25 C -0.219 4.219 26 C -0.061 4.061 27 H 0.045 0.955 28 C 0.002 3.998 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.137 0.863 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.104 0.896 47 H 0.111 0.889 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.031 -26.439 1.623 28.694 hybrid contribution 0.532 1.552 0.790 1.820 sum 11.563 -24.888 2.413 27.549 Atomic orbital electron populations 1.70181 1.08026 1.28669 1.48007 1.26141 0.95955 1.03359 0.93730 0.85002 0.77797 0.75623 0.79572 1.18495 1.20530 1.18626 1.23162 0.95382 0.91787 1.58900 0.89706 1.85620 1.10622 0.99361 1.97046 1.23379 1.03490 0.93908 1.06674 1.20195 0.85927 0.86710 0.74883 1.90672 1.17297 1.85773 1.50606 1.48102 1.07678 1.04982 1.73507 1.22069 0.77263 1.02493 0.99939 1.21907 1.03243 0.92035 0.98879 1.22110 0.88866 0.92750 0.91571 0.89901 1.87972 1.70297 1.21411 1.51774 1.22855 0.92884 0.81732 1.03951 1.22948 0.96051 1.00531 0.91634 1.62254 1.08379 1.08342 1.45605 1.21773 0.87262 0.96183 0.99652 1.22184 0.94666 0.96124 1.03472 1.23052 1.03768 1.03587 0.90782 1.23052 0.94711 1.03282 1.00807 1.22485 0.97705 0.88885 0.97043 0.95515 1.21512 0.99271 0.80221 0.98754 0.92018 0.87303 0.86868 0.87937 0.87924 0.86747 0.92107 0.91116 0.86352 0.87173 0.95166 0.95404 0.91217 0.86253 0.89649 0.87513 0.87202 0.89608 0.88944 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 2 C 0.01 0.73 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.54 -30.94 9.50 67.95 0.65 -30.29 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.12 -4.92 4.50 71.24 0.32 -4.60 16 11 C 0.53 20.47 7.71 87.66 0.68 21.15 16 12 O -0.57 -26.89 15.28 -3.01 -0.05 -26.94 16 13 N -0.61 -16.79 2.98 -818.89 -2.44 -19.23 16 14 C 0.10 1.95 6.33 86.39 0.55 2.50 16 15 C -0.12 -2.11 5.76 30.68 0.18 -1.94 16 16 C 0.11 1.94 2.62 30.65 0.08 2.02 16 17 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 18 O -0.40 -7.62 10.50 -148.98 -1.56 -9.18 16 19 C 0.06 0.84 7.00 72.01 0.50 1.34 16 20 C 0.02 0.24 5.46 86.30 0.47 0.71 16 21 N -0.52 -9.77 4.55 -869.86 -3.96 -13.73 16 22 C 0.08 1.57 5.02 86.31 0.43 2.00 16 23 C -0.15 -2.25 5.69 -10.79 -0.06 -2.31 16 24 C -0.17 -2.64 10.18 30.59 0.31 -2.33 16 25 C -0.18 -2.65 10.25 30.60 0.31 -2.33 16 26 C 0.05 1.08 1.97 45.01 0.09 1.17 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 C 0.13 3.17 5.27 86.32 0.46 3.63 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.11 3.92 7.68 -2.40 -0.02 3.90 16 31 H 0.11 3.99 7.95 -2.39 -0.02 3.97 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 1.89 5.92 -2.39 -0.01 1.88 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.11 1.19 6.31 -2.39 -0.02 1.18 16 39 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 41 H 0.07 1.61 5.63 -2.39 -0.01 1.60 16 42 H 0.12 1.52 6.40 -2.39 -0.02 1.51 16 43 H 0.08 1.47 8.03 -2.39 -0.02 1.45 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 48 H 0.07 2.21 5.37 -2.39 -0.01 2.20 16 Total: -1.00 -76.24 385.95 -0.48 -76.72 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.95 Total: 20.72 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 5.43 Total: -8.08 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -6.11 Total: -88.91 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -1.61 Total: -36.12 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -76.24 -0.48 -76.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.786 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds