Wall clock time and date at job start Wed Apr 1 2020 00:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47170 * 270.00052 * 3 2 1 5 5 H 1.48487 * 109.47409 * 30.00391 * 3 2 1 6 6 H 1.48501 * 109.46967 * 150.00800 * 3 2 1 7 7 C 1.38799 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99977 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00040 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00098 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47160 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99938 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.47356 * 125.57940 * 359.69742 * 13 11 10 15 15 C 1.55089 * 104.66310 * 154.72285 * 14 13 11 16 16 C 1.54932 * 101.78902 * 37.42852 * 15 14 13 17 17 H 1.08999 * 113.37930 * 87.69348 * 16 15 14 18 18 C 1.53787 * 108.81210 * 214.02627 * 16 15 14 19 19 N 1.47857 * 107.12884 * 113.27886 * 18 16 15 20 20 C 1.46896 * 111.00029 * 212.90132 * 19 18 16 21 21 C 1.53000 * 109.46901 * 183.04545 * 20 19 18 22 22 H 1.08995 * 110.80648 * 308.08312 * 21 20 19 23 23 C 1.54811 * 110.90712 * 184.45805 * 21 20 19 24 24 C 1.54108 * 104.18767 * 220.91961 * 23 21 20 25 25 O 1.43742 * 107.29355 * 357.96903 * 24 23 21 26 26 C 1.44386 * 106.97730 * 26.51509 * 25 24 23 27 27 C 1.48416 * 105.77560 * 333.39313 * 19 18 16 28 28 C 1.46858 * 125.57281 * 179.97438 * 13 11 10 29 29 H 1.09003 * 112.02372 * 58.23831 * 28 13 11 30 30 H 0.96996 * 119.99359 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47095 * 59.99666 * 10 9 7 32 32 H 1.09001 * 109.47146 * 300.00113 * 10 9 7 33 33 H 1.09009 * 110.37156 * 273.65511 * 14 13 11 34 34 H 1.08999 * 110.37839 * 35.98966 * 14 13 11 35 35 H 1.09000 * 111.16133 * 279.23356 * 15 14 13 36 36 H 1.09008 * 110.86144 * 155.48121 * 15 14 13 37 37 H 1.09001 * 109.90551 * 353.90727 * 18 16 15 38 38 H 1.09004 * 109.90728 * 232.66033 * 18 16 15 39 39 H 1.09002 * 109.47431 * 303.04441 * 20 19 18 40 40 H 1.08994 * 109.47304 * 63.04876 * 20 19 18 41 41 H 1.08998 * 110.49088 * 339.59225 * 23 21 20 42 42 H 1.09003 * 110.49089 * 102.24414 * 23 21 20 43 43 H 1.09001 * 109.87507 * 117.39184 * 24 23 21 44 44 H 1.08994 * 109.87896 * 238.54213 * 24 23 21 45 45 H 1.08990 * 110.62085 * 201.43840 * 26 25 24 46 46 H 1.09003 * 110.61992 * 78.43459 * 26 25 24 47 47 H 1.09000 * 110.58396 * 280.53436 * 27 19 18 48 48 H 1.08999 * 110.71474 * 157.68552 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4480 2.6526 0.7000 6 1 3.5480 1.4400 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2022 -0.0012 10 6 4.0866 -2.9847 -0.0025 11 6 5.5730 -3.2327 -0.0026 12 8 6.3440 -2.2965 -0.0024 13 7 6.0455 -4.4949 -0.0030 14 6 5.2237 -5.7180 0.0029 15 6 6.1277 -6.8015 -0.6406 16 6 7.5210 -6.4277 -0.0755 17 1 7.7356 -6.8908 0.8877 18 6 8.5877 -6.7425 -1.1377 19 7 9.1622 -5.4517 -1.5737 20 6 9.5475 -5.4988 -2.9904 21 6 10.2056 -4.1749 -3.3842 22 1 9.5760 -3.3308 -3.1029 23 6 10.5246 -4.1455 -4.8988 24 6 11.9152 -3.4860 -4.9791 25 8 12.3011 -3.1379 -3.6390 26 6 11.6156 -4.0487 -2.7528 27 6 8.1010 -4.4397 -1.3443 28 6 7.4637 -4.8762 -0.0037 29 1 7.9969 -4.4688 0.8553 30 1 -0.4849 0.8401 0.0004 31 1 3.6432 -3.4311 -0.8926 32 1 3.6439 -3.4323 0.8873 33 1 4.9631 -5.9951 1.0245 34 1 4.3228 -5.5729 -0.5933 35 1 6.1159 -6.7288 -1.7281 36 1 5.8301 -7.7986 -0.3155 37 1 8.1283 -7.2497 -1.9861 38 1 9.3680 -7.3691 -0.7057 39 1 10.2516 -6.3157 -3.1486 40 1 8.6605 -5.6599 -3.6031 41 1 10.5588 -5.1578 -5.3012 42 1 9.7869 -3.5463 -5.4326 43 1 12.6343 -4.1879 -5.4015 44 1 11.8646 -2.5884 -5.5953 45 1 11.5503 -3.6307 -1.7483 46 1 12.1162 -5.0168 -2.7351 47 1 7.3638 -4.4689 -2.1466 48 1 8.5319 -3.4423 -1.2573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186939722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:12 Heat of formation + Delta-G solvation = -91.581141 kcal Electronic energy + Delta-G solvation = -27808.063387 eV Core-core repulsion = 23988.049649 eV Total energy + Delta-G solvation = -3820.013738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84517 -40.46606 -39.53150 -37.16075 -34.70080 -34.26459 -32.69369 -31.57874 -30.68321 -29.40367 -28.39245 -27.85586 -25.97935 -24.16538 -23.60596 -22.31635 -21.60623 -20.99843 -20.37427 -19.65891 -18.23495 -17.88802 -17.27789 -17.14241 -16.83793 -16.70216 -16.38320 -16.11542 -15.89281 -15.42245 -15.30561 -15.02173 -14.86428 -14.70175 -14.32350 -14.11462 -13.83817 -13.62044 -13.55175 -13.38099 -13.24283 -13.05247 -12.98487 -12.67606 -12.52676 -12.45273 -12.23222 -11.92966 -11.89176 -11.86944 -11.73463 -11.61544 -11.46789 -11.19840 -11.03391 -10.65069 -10.56787 -9.81760 -9.41850 -9.04026 -8.54344 -6.25629 0.92918 1.28768 1.42585 1.48060 1.50442 1.98444 2.22475 2.64720 2.83881 2.85273 3.06854 3.22286 3.47553 3.62839 3.63566 3.75658 3.78369 3.94183 4.07020 4.09844 4.13558 4.15837 4.29296 4.31268 4.34515 4.36129 4.44927 4.52488 4.60659 4.64400 4.69702 4.71997 4.80138 4.84844 4.87579 4.91087 4.95220 5.04035 5.05775 5.06133 5.20329 5.23756 5.38475 5.68231 5.77578 5.92429 6.00459 6.08482 6.33559 6.90892 7.03680 8.58060 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.002773 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.086220 B =10093.294299 C =11758.905865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.239 1.239 7 C -0.527 4.527 8 H 0.063 0.937 9 S -0.176 6.176 10 C -0.101 4.101 11 C 0.546 3.454 12 O -0.559 6.559 13 N -0.611 5.611 14 C 0.086 3.914 15 C -0.115 4.115 16 C -0.092 4.092 17 H 0.125 0.875 18 C 0.045 3.955 19 N -0.520 5.520 20 C 0.065 3.935 21 C -0.120 4.120 22 H 0.058 0.942 23 C -0.146 4.146 24 C 0.041 3.959 25 O -0.413 6.413 26 C 0.064 3.936 27 C 0.042 3.958 28 C 0.131 3.869 29 H 0.079 0.921 30 H 0.277 0.723 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.035 0.965 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.226 -21.783 -6.607 31.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.163 1.163 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.051 5.949 10 C -0.252 4.252 11 C 0.333 3.667 12 O -0.437 6.437 13 N -0.346 5.346 14 C -0.035 4.035 15 C -0.153 4.153 16 C -0.111 4.111 17 H 0.143 0.857 18 C -0.082 4.082 19 N -0.244 5.244 20 C -0.063 4.063 21 C -0.139 4.139 22 H 0.077 0.923 23 C -0.184 4.184 24 C -0.035 4.035 25 O -0.333 6.333 26 C -0.012 4.012 27 C -0.087 4.087 28 C 0.027 3.973 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.054 0.946 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 22.769 -19.965 -6.272 30.925 hybrid contribution -2.212 0.011 -0.528 2.274 sum 20.558 -19.953 -6.799 29.445 Atomic orbital electron populations 1.70012 1.07210 1.29048 1.49068 1.25533 0.95270 1.02152 0.92881 0.85892 0.80673 0.79752 0.80225 1.18713 1.18153 1.16253 1.22424 0.90020 0.96721 1.58331 0.91868 1.84755 1.06692 1.05939 1.97560 1.23194 0.95481 0.99581 1.06903 1.19689 0.89432 0.81957 0.75575 1.90694 1.59324 1.43043 1.50683 1.48453 1.08151 1.04974 1.73025 1.22778 0.95072 0.83009 1.02674 1.22975 0.92597 0.99406 1.00302 1.23041 0.95762 0.91235 1.01110 0.85741 1.22986 0.96840 0.91154 0.97265 1.64732 1.35341 1.05051 1.19278 1.22245 0.99673 0.96933 0.87497 1.22682 0.97333 0.98343 0.95547 0.92337 1.22965 0.97112 1.03057 0.95304 1.23306 0.95389 1.00564 0.84256 1.88850 1.69664 1.57206 1.17534 1.23532 0.90007 0.93837 0.93815 1.23243 0.92741 0.96532 0.96217 1.22510 0.80799 0.96694 0.97276 0.90250 0.91304 0.87361 0.87183 0.89300 0.90093 0.90800 0.86209 0.91751 0.88031 0.87998 0.94000 0.88280 0.90593 0.90730 0.89837 0.90028 0.90442 0.94642 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.85 13.97 21.65 0.30 -55.55 16 2 C 0.05 2.79 5.50 84.86 0.47 3.25 16 3 Si 0.91 45.49 27.74 68.60 1.90 47.39 16 4 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 7 C -0.53 -30.91 10.04 67.95 0.68 -30.23 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 9 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 16 10 C -0.10 -3.93 5.14 71.24 0.37 -3.57 16 11 C 0.55 19.90 7.67 87.66 0.67 20.57 16 12 O -0.56 -25.04 15.88 -3.03 -0.05 -25.09 16 13 N -0.61 -15.83 2.96 -782.91 -2.32 -18.15 16 14 C 0.09 1.45 6.71 86.93 0.58 2.04 16 15 C -0.11 -1.18 6.35 31.97 0.20 -0.97 16 16 C -0.09 -1.10 4.00 -9.04 -0.04 -1.14 16 17 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 18 C 0.04 0.48 6.24 86.38 0.54 1.02 16 19 N -0.52 -8.58 5.23 -884.34 -4.62 -13.20 16 20 C 0.06 0.89 4.04 86.30 0.35 1.24 16 21 C -0.12 -2.10 3.09 -9.49 -0.03 -2.13 16 22 H 0.06 1.39 6.85 -2.39 -0.02 1.37 16 23 C -0.15 -2.00 6.60 31.59 0.21 -1.79 16 24 C 0.04 0.65 7.70 72.36 0.56 1.21 16 25 O -0.41 -9.44 11.52 -148.98 -1.72 -11.16 16 26 C 0.06 1.21 7.11 72.67 0.52 1.72 16 27 C 0.04 0.98 4.71 86.60 0.41 1.39 16 28 C 0.13 2.90 3.85 46.34 0.18 3.07 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.11 3.91 7.84 -2.40 -0.02 3.89 16 32 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 33 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 1.40 7.43 -2.39 -0.02 1.38 16 35 H 0.07 0.83 7.53 -2.39 -0.02 0.81 16 36 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.06 0.55 6.94 -2.39 -0.02 0.53 16 38 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.10 0.97 7.99 -2.39 -0.02 0.96 16 40 H 0.04 0.58 7.98 -2.39 -0.02 0.56 16 41 H 0.10 0.90 7.86 -2.39 -0.02 0.88 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.16 7.94 -2.39 -0.02 1.14 16 47 H 0.04 0.92 7.85 -2.39 -0.02 0.90 16 48 H 0.06 1.72 7.53 -2.39 -0.02 1.70 16 Total: -1.00 -76.61 387.04 -0.99 -77.60 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.90 Total: 12.61 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 5.66 Total: -4.32 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -6.64 Total: -86.90 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.76 Total: -36.25 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.39 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -76.61 -0.99 -77.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186939722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.986 kcal (2) G-P(sol) polarization free energy of solvation -76.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds